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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005852 ID=TCONS_00005852|Name=TCONS_00005852|organism=Clytia hemisphaerica|type=transcript|length=360bp
cgtgtaatcaaataaattttctgACTAACCCTGTGAATACGGTTAAAGAA
TCGTTTTCGCATTTTGGAAAATTACCACCCAATTGAAAAGTCTTCCATTT
TAGACGATATGAGATTTGATCTTTTAAGGATAAACTGTCATTATAAAGAT
GGTAGTATTCCACATTGGAACGGCTTTCTGATTGGACAGTTAATGGAGAT
TTGTAAATGACGTAATGATTTTCGATGCAATCAGTATAAGGAGTGCATTT
TGCTTGTGGAGTTGCCAAGCTGGCAGTAAATGCTAAGGTAAGGATGATGA
TGAGAaagattttgtgaaatttttgttCTGTTCTCCTACATGATGCATAA
CCAATTTTCA Run BLAST on NCBI transcript from alignment at sc0000061:545402..553309+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005852 ID=TCONS_00005852|Name=TCONS_00005852|organism=Clytia hemisphaerica|type=transcript|length=7908bp|location=Sequence derived from alignment at sc0000061:545402..553309+ (Clytia hemisphaerica)
cgtgtaatcaaataaattttctgACTAACCCTGTGAATACGGTTAAAGAA
TCGTTTTCGCATTTTGGAAAATTACCACCCAATTGAAAAGTCTTCCATTT
TAGACGATATGAGATTTGATCTTTTAAGGATAAACTGTCATTATAAAGAT
GGTAGTATTCCACATTGGAACGGCTTTCTGATTGGACTGTTAATGGAGAT
TTGTAAATGACGTAATGATTTTCAATGCAATCAGTATAAGGAGTGCATCT
TGCTTGTGGAGTGGCCAAGCTGTCAGTAAATGCTATATTAAGGATAATGA
TGAGAAAAAGTGTATGAAATCTTCTTCGTCTTGTTTTACATGATTTGTAA
CCAATTTTCATCTGAAAAATACGATAAaggtaatcatttttttcttttag
aagaacaattttataagaataacaaggctcaaaatcgccaaaatatgaca
acaatttaagaacaatgctgagtcTGGAATTActcattttcaagcaattt
agaggtCAAAATAGTAAGAATAAGGtaaaaagcctaaaataccttAATTT
CATCCTATAACTAAGAAcataataagaacaatttgatgcTCAAAGTGGCA
AAAAATAACAACAGCCGGAGCCTAGAGTCTCTATTTCTCGAATTTAGGGT
GAATTAGCGTCCCTTTACGTAAGAAACTTTTTTAACTAGTCTAAAATATA
ACAGTCAATCAATTCAGACATAGTGGTCAATAATCAAAATATGGACAAAT
ATGTAGTTGTATAGAAAACGACACATTATCTCGCAAAAATAGCGTATAcc
actgtcgaacgtgctaacaaTACTGCCTCAACTTCACTTTTAAACCCAAT
tgcaaaattgataaaaaaacaatttcaaccattttttgtGGCTGCCTCAA
ATTTTTTCAGCCTATTTTTGGGGCTAAAACTAGTGGCcacaaacatttga
aaaaatgaaaatgacataCCCAGGGATTCGCCCAAGGATCAAGTCTGTAA
GATCTCAGCcaaattggaccatttttgaagtcttcagtCTGCCCAAAAAG
TTTGAagagacagacagacagacagacagacagacagacagacagacaga
cagacagacagacagacagacagacagacagacagacagacagacagaca
gacagacacagattctagctcaattgaagttgagaatatcaCTGATATTA
CTGTATTCAGTCCAATTTGTAATAAGTCTCATAACTGAATCTAACATAAC
TCGAGCAAATTCTAGTTTTCTGTACGTCTTCCAGTTATGGTGAGTCCACT
ATAAGTAGAAAGTCACAAAGATTCTGTAAAACATTATTGTTTGTAAGATG
ATCACAAAAAGGTGAGATTTTACTACATATGCAACCATCATAATTAAATT
TTTGCCGAGTTGTCTCGAGATTCTTCGTAGAGTATTTTTGAAATCgccat
aaaaaatgtttttaacaagCTACAACATTTTATGCCAAATATTACATTCA
AAATCTATCATTCATGTATTAAAATTCTGCCTTTTTgtataaagtttttt
aaataattcaaATACCTCTATTACAGATAAAGGGGCTTTATAAGCAACTT
CTGCGTGTAAGAAACAAATGAACTCTTTTATATAAAGATTTTCATATTAT
ACACTTTtgtataagaaccagtaaattttggatGAGGTTTgactgttttt
aattttttgtgattttaaatCTTCAATGTTCTTCAAATGTCCTAAATATG
CTGACTCAGCCAAtttgtttttttgccaaaaattgtACTCTGTACAATTG
AGTGTAATTCACGTTTGTCGCTTcatagtacactctgtgcgcattgtctg
tttgactAAAatattcccgtacggagacctctgcgatgaagcaTGATTTA
CAGAGAGCAACACTTCTCCCAGTTCTCTCATCGTCTCCTCTCTCTCATCA
ACACTCCGTcacagcggtcggtttgaaaaatctcaaatgagaaaagacaa
caAAAGTTGAGGCTCATTAAAATTCACCCATACCATATTTGAATGTTACG
GTATCACCATGGACGTTCTTTTAATGTCCCATACACCGGATATGATACGA
TACAATGGTTTCTTTCCTTATATTGGGTCCCTTCATTGTCAAGCTGCTGA
AATTCACTAAGGGATTCGCGCTTCTTATTCTACTGGTGGTATGTAAAGTT
CTTAGTCCACACAATAGGCAGTTCCAGGCTTTTAGGTCTTACTTTTAGTC
TATAGACACTGCTATGGACAGCCACTGTTTTCCCTACATGAAATGCACCT
ATTAATTAGTGATTAGTGAGCATATCCCAGAGAGTATTTTACGCTTGAAA
CAaaaagatatgacgtagcctatagAGGCCTGTGATTCAGGCTACCTTAT
TGCGAAAAAgctgaaataccaaaaaaaaatctgacaaaCCTGACACATGC
GAATCTAAAATATACCATATAAAATTGCATCAATTACCAAGTCTTATCGA
TCCAAGTTTTTTCCTCTCTTATgcgttcttaaaaaaaaatccatgGAAAA
AGAGATTAGACACCAATGCATGCTAAGCATATACTGTTTTTTGCTAAAGC
TTTGATAAAATACTTTTGTTATAAAAGGATATCCAATGCATATCTTGTTA
TCTAATAATCAGTTGtcttaaaaacattaaaacgtCAGAATTAAAAATGA
CCCATACACCGTTATAATGAGCCCTGAATATCGAAATCAAGCTATTAAAG
CctattcgctttaagtgtgGTAACATGGTAGCTAGTTCATCAGTGTATAC
ACGGATGGACTTTAAATTAAAGTTGGGCATCATTCTCACTTTAGCCCTTT
GGCATTAGACCACAGTGTTCAGAAATATGTATGTCTCCAACGGTAAGATA
TGGTATCTATAGCTTATTTGTTATATGACGATTGAAGCAGTCTTAAATAG
ACTTAAagggtttgtttttaaataagagtgatattgtttgcttactcatc
aattttaatttacaagctttttcacattggattgacacggatgtggagca
agatttatCAGAAAGCTGCTTATATCAgtacaatataacaataggcaggc
actatctgatatgaaacgggaacacttatgtaaaaataataccTTTAAGA
TTGTAACTGTAACTTGTGGGTTTATCTGTTAGTTTTTTACCTCAGGTAAA
AAAATTCCTTCTTAGATTTTATAGTACAATAGACTAAAGTGAtagaaaaa
taaagttaaaaatattgtaaaaactATAGAATATAAATATGTTTATTTAA
TAGTGCAATTAATTATAATACCTTATAGTGCGTGGCTTTCAAATAATGCT
GACATAATAGAATTAACAATTCATGCTTTTGTTGTTTTGTCGTCAGCAAC
ATCACCTTGTCATGTTGAGGTGCTTCACTTGGAGGACTGGGTCCAAGAAT
GACGTCATTGTACGTTGGAAGTGAATCTAAACAACATCATCGTCACCTTG
CCATGTTGAGAGCTTCGTCATAAGATGGAGGAGGTGCTTCACTTGGAGGA
CTCGGTCCAAGTGTGACGTCATTGTACGCTGGCGGTGaatctaaaaaaat
tgatagaaagatttttttacaaagcattgtaAAAGCTtaaattacatcac
ggacccaacagctgatagattggttgtaaatgacgtaaaatcagtcaata
cgtcacactttcaaccaatcagctgttgggtccgtggaagatatcgcagt
ggtgcatatcaggAATACGTAAGTAGTTAGGATTTAAGATTTAGAATGGC
ATTTGGTGTCAGCTAAGTCTGTACTTTTTGTTGTTACAAATATGTGAAAT
ATACCATTTCCTTAAATGCACTGTACTAACAAATGGCCGACTATATGTCT
TATTGACCACTTACCGAAAGGGTCGTTTCGTGTAGGCATTTCCATACCGA
TATTATCAATTCCCATTGCATCTCCAATTTCCATAATTCCCGGAGTCGGC
ATCTCCAAAGCAAAACTATGTCTCCTACTACTATTACTAAGAGTTCTAGA
TCTTAATCTGGGAGTAGCAGCTTGCTCCTGATCCCCTATCGAGGATCTAC
GTGTATTAGTTTGGTCTTGATTGCCAACAGATGACCGACGTGTTTCTATA
GCAAAATTCCTGCTACAAAGTTGGCTTCTAGGTTGGCTTCTAGTCGCTCG
TTGGGGGCATGTTGGTACCGTGCAGCCCCCACCTTCACCATTTCTTCGAT
AACATCCTTGTAGGAAGAAACAGGCTACGATACAGAAGAAGATGATACCA
CCAACTGATGCACCGTCGGTTGAAGAAGATTCCTTGCTGTTGGATGTCGA
TTGAAGAGCTACGGAAAGAAATTTAACTTTGAGTGGATTTTAAAGCTCGT
ATAAGTCGAATTAGATTCAGAGAAATGCAAAATACGCAAACAGAAGAAAA
AATCTCAACAAAAAGCAAAATTTATCTTTCCCAACCACCTGAAACGCAAC
ATTTGGTTTAAAAACGTTTATTTCACCTCTCACTGAATGGATATTAGCTC
GCTTTGATGATTTGTGGGCACCTTGGTATCTATGGGTATTTCTTTTCGTT
GTTTTGGCGCTTAAGTGAAACCTTCTTCACCGTGACAATATTTTGGACCT
GCGTATTTCTATTGTGTCGGAGACCTTAGAACCAGGACTGACAAACACAC
AAACACAAGAGTAAAAGTACAGTAGAGTatctttaactcgaacttctata
cctcgaatgtctccttaaaaCTCTGACAAGTTTTCTAATCCCTTATATTA
ACaatataactcgaaatttatTTAACTCGAACGAATTCATCTTTTCCGTG
CGGGTTAGAGTTACGGAGACTCGACAGTATTTAACTTACAGGTGTCAATG
AACATCCATCCCAGAGCGAACCGGTTAGTTTTCCTGTCCTGCCTAGCGTT
AATATCTTGTAAATATTTGACTTCTACTTCTTCATTAAAAGTCATGTACA
TCGTGTAATTTTTCTTCATGTCTTTTGATattatgaaattaaattttcga
GACACCAACCCAGTATGGAtaccttaaaaattgaaaaaataaacaaaggt
CAAAGTAAATACTCTTGGATAGAATAATTACTGATTCAGACGTAAATTGG
CTATTTTTGACATTGACGAAAAAGTACGGGAATCGGCGGAAATAAGAAAT
CTATCTGAGGCAAACTAAAAACCGAAATAAGATCGAAAAGAAACGATGAT
AATTTGAATGGTCAGAGGTAAAAACAATATTGGATTtctaaacctttttt
taaagaaaattgaaacaggttaccCCATATTCGGGGCAACTCTCGGAcag
gaattttatacacaattTACATCCCCTtgggggccatccatatagtacgt
acgcagtgaaggggggagaggggggtttaCCAAAAGCGTATACAGTATCT
ATTATTTAAAttacatcatttctattgttctcagcgtacaagggggaggg
ggtatcgaatttttggaaattctttGCGTAtatactatatggacggcccc
ttGTATCAAATAATTTCAATCAGGGGGGGGTGCGTGCAGTCTATTCTTTC
GTGTAGTCTTTTATCTTACCTCTACCGATTTCAgcgtaaaaaaaatcatt
tggtGTCACATAGCAAGGGTTGTAATAAACAGATGACGAGGAGTTCAACT
TTGAGAGAtgacattttttttgtaatgtATTGTAGTCGATCGACTTGCAC
CAAGATTCTTTTTCACACCTTTCTTGACATTGTGTGAAAGATGGGATATT
GTCATAAGTTCTTTCGTTGTTTAGTTTGATGCAAGCATTCTTTGTGACAA
ACCAAAGGTTGATTGCTAAGAAAAAGATGTAATTTTTTAGTCCAATAGAA
TTGtattttaagtcaattttcagtACAAACCTCTgcaaatttttctgaaa
aattacaaatataaatttgactttttttacgtgaaaaacaaaaaaaagta
ttaaaattaaaataggATGGTCTGTATAATTTTGTGAATAAGGCCATCGA
AATGGTCCCCAATAAGGTCCCGTGATATGGTCTACAATAGGGTCCCGTGA
TACGGTCCACAATAAGGCCCCGTGATATGGTCCACAATATGGTCCCGTGA
TATGGTCCACAATAAGGTCCCGTGATACGGTCCACAATAAGGTCCCGTGA
TACGGCCCACAATAAGGTCCCGTGATATGGTCCACAATATGGACCCCATG
ATATGGTCCACAATGACccaaaacgaagaaaaaacaagttttctaaCCTG
AAAATTGAATAGTATCATCGTGAAGATCCAGatcaaaaaaattgagaacT
GTAACTTTATTTTCTGTTGCTCTGATTTTCCACGTACAAGAGGATATATT
CTTAGGAGATGTTGCTGGCCAACCAGGAGATAGAATGACACTATTGTTTG
AATTGTATGagctaaaaaaaaaagtttgaagggtAAATACAGCTTCGTTT
TttagaacaaactatttaagaatTTAAGATTTCGATggacaaaatattaa
gaacaagttaagaacaagctaagaaacGTTTTAGGGCTGGAACAATGGTT
TAGgaaattgtacaaaaatatttacaaaatggtgaaattaagaacatttc
aagaaaatttctaGGCTTAAacttcaaaaattaagaacaatcgaAGTATT
CAAAACTTTGgctgttctgataaaaaaaaaacatgtaagaaatAAAACTC
CAACAGTTAAAACTAATGCTCTTATTGGTACAGTATCGGTCTCGTCCCCA
TATCCACACCAGAAAAGCGTCAAAAAATCAATAATGCGCACTGTgaatca
aaatattaagaacaaattaagaacattaaaAAGTGAATACCTTGGATCTT
CAGTACACAGAGAAGTATTCAATTTCGATAAAGGTAATGATTCAATTTCC
GCTTCAAATTTACTTCCGTAAGTTCGTCCATTCTTCAATTTTAATGTAAA
ACAACCATCAAGTGAATAAATATCATGTGGGATGGTTCGTCCACAAAATG
TCGCAACTTGCTTTGGGTTGCTACCACACCTGTAAAAGGGAAATCAGCTG
CGTTTTCGTAACGTACGGTGAAAGTAAGACCATGtccagacgttacggtt
ccgttccgttccgaaacgaaacggttcctaaacaagtgtgaacgtcaaaa
ttcgaaacgtcaaaaaagaagacgttacaaagcaaaacagatcgaaatgt
tttcgctccacttttttcatcggaacggaactgcttcgttttcttgctcc
gaaacgctccgaaacgttccgaaaccaatatgaataCACTCGAACCGTAA
CGAAAACCttaccggagcgaaacggaataGTAACGTATGAACATGGGCTA
AATTGGATGATTGGTTTATTTTTTACGCCATTGTTAATTGAAGGAACCAG
AAAACTTGCCCTGATTTAAAAGACACATTCGAGATGCAGAGGTTAAAGAA
ATTTAGAGTACCATGTATACTCATATGGCCTCCTTGAAATCACAAAcgat
gaaaataaagatgtcATTCTATCTTACCCTGTAAAAACTGCAACATAATC
TTTGTCACATTCTGGAAAATCACCGCTTAATTGGAAAATCTTCCATTTTA
GACGATATGAGATTTGATCCTTGAGAGAGAAACTATTATTGTAGAGATGG
TAGAATTCCACATTGGAACGGCTTTCTGATTGGACAGTTAATGGAGATTT
GTAAATGACGTAATGATTTTCGATGCAATCAGTATAAGGAGTGCATTTTG
CTTGTGGAGTTGCCAAGCTGGCAGTAAATGCTAAGGTAAGGATGATGATG
AGAaagattttgtgaaatttttgttCTGTTCTCCTACATGATGCATAACC
AATTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005852-exon-sc0000061-1491911889:545402..545564 | TCONS_00005852-exon-sc0000061-1491911889:545402..545564 | Clytia hemisphaerica | exon |
| TCONS_00005852-exon-sc0000061-1510915933:545402..545564 | TCONS_00005852-exon-sc0000061-1510915933:545402..545564 | Clytia hemisphaerica | exon |
| TCONS_00005852-exon-sc0000061-1575043694:545402..545564 | TCONS_00005852-exon-sc0000061-1575043694:545402..545564 | Clytia hemisphaerica | exon |
| TCONS_00005852-exon-sc0000061-1491911889:553113..553309 | TCONS_00005852-exon-sc0000061-1491911889:553113..553309 | Clytia hemisphaerica | exon |
| TCONS_00005852-exon-sc0000061-1510915933:553113..553309 | TCONS_00005852-exon-sc0000061-1510915933:553113..553309 | Clytia hemisphaerica | exon |
| TCONS_00005852-exon-sc0000061-1575043694:553113..553309 | TCONS_00005852-exon-sc0000061-1575043694:553113..553309 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:545402..553309 + |
Blast
The following BLAST results are available for this feature:
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