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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005847 ID=TCONS_00005847|Name=TCONS_00005847|organism=Clytia hemisphaerica|type=transcript|length=1123bp
CTGAACGATATTTTTGACTAAAATCGTTTTTGAATAAGCAAAAAAGAGCT
GGCTCAAATAGCAGGAATTTAGAAAATGCATGAAATAAATTGAATTTGGG
GGAAATTGATTTTGTGGATAACGGAAGGAAAAAACTTTGGCGGGAACTTG
ATTTGTCGGATTTCGGGTAAATCGtccaaatccaccaaatttcTTCCgcc
taaatattttcttttaaggTAGTCAATCGAccaattattttttattcttc
tctATAGCTGGTACCAGAGCATGTCGTCTTGACGCCTGACGAAAAAGCTG
AACTCCTGGGTCGATATAAACTAAAAGAACATCAATTGCCTAGGATACAA
CAAGGAGATACCATAGCCAGATATTTTGGTTTGAAGAGAGGACAGGTCAT
CAAAATCATTCGTCCGTCGGTGACAGCCGGGCGTTATGTGTCATACCGAA
TTGTACAGTAACCGAACAAAGGTTAACCACCCTCCCGCCCATGTCAACAT
AGTAATTTCAAATGAAAGGAGACAGGTTACATCATTTTGTTACTGttttt
cataatggcagattttgaaattgtgtataatttttttgtaaaaagactGG
AAAGGTTTTTACATTTGACACGGAGTTATGGTTGATTGACAATTAGGACA
TAACTAATAATTCATTATTACTGTCAATGCTTGTGAAGTCAAGAACCACG
TCCTATGAAATGACTGGAGAAATTCATAGGAGAGTCAATTTATTGAGGAA
GTgacaaaaagaacaatttttattACGGGCTCCGTCGAGGGCTCCGTCAA
GGAGACTGAGTGGTCGACGAGTACtatttgaaaatgatattttagatttt
ttttaagataaaagaaaaatgatacACTAAGCTATACTATCTCGTACGTA
AGTCAAGCTATTCGCTTTTCTGACAGTTGTTTTCCAAGAAAttggttttt
aagttttaattaaGTTTCAGCAAACAGATATTCCACGAAAACATTCAAAT
GATATATTCCATCCCACATCGGAAAATTGAGGTTTTGGAAAATTACAGGC
TTTGTTATCCGATCAGTAAGGGGTAATAAATTCGAATTTTATTAAGACGA
AGttcattttatatatatatCCC Run BLAST on NCBI transcript from alignment at sc0000061:453395..454907+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005847 ID=TCONS_00005847|Name=TCONS_00005847|organism=Clytia hemisphaerica|type=transcript|length=1513bp|location=Sequence derived from alignment at sc0000061:453395..454907+ (Clytia hemisphaerica)
CTGAACGATATTTTTGACTAAAATCGTTTTTGAATAAGCAAAAAAGAGCT
GGCTCAAATAGCAGGAATTTAGAAAATGCATGAAATAAATTGAATTTGGG
GGAAATTGATTTTGTGGATAACGGAAGGAAAAAACTTTGGCGGGAACTTG
ATTTGTCGGATTTCGGGTAAATCGtccaaatccaccaaatttcTTCCgcc
taaatattttcttttaaggTAGTCAATCGAccaattattttttattcttc
tctATAGCTGGTACCAGAGCATGTCGTCTTGACGCCTGACGAAAAAGCTG
AACTCCTGGGTCGATATAAACTAAAAGAACATCAATTGCCTAGGATACAA
CAAGGAGATACCATAGCCAGATATTTTGGTTTGAAGAGAGGACAGGTAAG
TTTTGATCAATTCActtctttctccctggattggaTTTTAATAAAGTTTA
GGGGGCAGACTTATTGTGAACACTTATTGGGATTGcacctttttttattc
ttttggaATAAGCTGAAGGGTTGAGTTTTCGGGGTTCAGACCTCTTAGTA
CACCATTCGTGTtagtcttttttcatttttcgtccTTACATCAAAATTTG
CGTTGAAGGTAATATTTGGGTTCGAATTTACGACTACGAGGGTTGATTGA
GACTAAAAACTTTTGTATCGACACTTTCATGGATCTTTGCAGAACTGTTG
CATAGCTAAATCTTCTTTGAGACTCATTCGAATCTGATGAACAACTTATT
AGATTGTTCTTTTATATATCTTATTTCAAATTTAGGTCATCAAAATCATT
CGTCCGTCGGTGACAGCCGGGCGTTATGTGTCATACCGAATTGTACAGTA
ACCGAACAAAGGTTAACCACCCTCCCGCCCATGTCAACATAGTAATTTCA
AATGAAAGGAGACAGGTTACATCATTTTGTTACTGtttttcataatggca
gattttgaaattgtgtataatttttttgtaaaaagactGGAAAGGTTTTT
ACATTTGACACGGAGTTATGGTTGATTGACAATTAGGACATAACTAATAA
TTCATTATTACTGTCAATGCTTGTGAAGTCAAGAACCACGTCCTATGAAA
TGACTGGAGAAATTCATAGGAGAGTCAATTTATTGAGGAAGTgacaaaaa
gaacaatttttattACGGGCTCCGTCGAGGGCTCCGTCAAGGAGACTGAG
TGGTCGACGAGTACtatttgaaaatgatattttagattttttttaagata
aaagaaaaatgatacACTAAGCTATACTATCTCGTACGTAAGTCAAGCTA
TTCGCTTTTCTGACAGTTGTTTTCCAAGAAAttggtttttaagttttaat
taaGTTTCAGCAAACAGATATTCCACGAAAACATTCAAATGATATATTCC
ATCCCACATCGGAAAATTGAGGTTTTGGAAAATTACAGGCTTTGTTATCC
GATCAGTAAGGGGTAATAAATTCGAATTTTATTAAGACGAAGttcatttt
atatatatatCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005847-exon-sc0000061-1491911889:453395..453789 | TCONS_00005847-exon-sc0000061-1491911889:453395..453789 | Clytia hemisphaerica | exon |
| TCONS_00005847-exon-sc0000061-1510915933:453395..453789 | TCONS_00005847-exon-sc0000061-1510915933:453395..453789 | Clytia hemisphaerica | exon |
| TCONS_00005847-exon-sc0000061-1575043694:453395..453789 | TCONS_00005847-exon-sc0000061-1575043694:453395..453789 | Clytia hemisphaerica | exon |
| TCONS_00005847-exon-sc0000061-1491911889:454180..454907 | TCONS_00005847-exon-sc0000061-1491911889:454180..454907 | Clytia hemisphaerica | exon |
| TCONS_00005847-exon-sc0000061-1510915933:454180..454907 | TCONS_00005847-exon-sc0000061-1510915933:454180..454907 | Clytia hemisphaerica | exon |
| TCONS_00005847-exon-sc0000061-1575043694:454180..454907 | TCONS_00005847-exon-sc0000061-1575043694:454180..454907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:453395..454907 + |
Blast
BLAST of TCONS_00005847 vs. Swiss-Prot (Human)
Match: RPAB1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4) HSP 1 Score: 109.383 bits (272), Expect = 1.141e-27 Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 3
Query: 258 LVPEHVVLTPDEKAELLGRYKLKEHQLPRIQQGDTIARYFGLKRGQVIKIIRPSVTAGRYVSYRIVQ 458
LVPEHVV+T +E ELL RYKL+E+QLPRIQ GD +ARYFG+KRGQV+KIIRPS TAGRY++YR+VQ
Sbjct: 144 LVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLVQ 210
The following BLAST results are available for this feature:
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