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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005842 ID=TCONS_00005842|Name=TCONS_00005842|organism=Clytia hemisphaerica|type=transcript|length=1965bp
ACGGTCGTACGTAGATAATTCCATTTagttttttatataatataccTCTG
ATGGTTCATATTATCTGAGTAGGTGACCAAAAGAGCAATATAAAACAACC
AGCAATATTATCCCCATAATACTCCACACATTTGTTATATCTACTTCTAC
ATAATGTTCGGCGTAAACGTCACCATGATCATTATCTCCGTAAGGTGGTA
ATAAGTTCCAATCTTTATATTCCCGGGGTCGACAAGTGTCAATATCAAGC
CCTGGGTGTAAATTCCCTTGAGATAATCTCATGCATACCTGACAGAAGAG
CGGATACTTTTGTTTCCACCAGCGGCCGATTGTTGTATTGCTCATATCAC
CTATACCAATTTCCTTCCATTTCAGGTATTCATTGAAAGCAGTCTCATTC
CCACTCAAGTATTTCAAATAATCGGCTAACTTTTTCGGGGAACTAAAATC
GGAAACACGGATTATGGAGTTCTTCAAATTACCCGGTAAGAATTGATCTA
TTTTATCTGTGCCCATGTAGACAGGGATTGAACCAGTTTCTAAGGCATGG
TATAGACGGTCATCTACAAAATGATCACAATCTTGGTTCATGAAAACTAA
TGAGAACTTATAAAATCGGGTTAATACGACTTTGTAATCTTTAAAAACGT
ATTTCCCGTTTATGTGACCATACAACCCAATTAAACCATCCCGGTTTTTC
AGGCATGCGCCGTATGAGTGAACGTCTATGTATTTCATAAGTTGCCGCAT
ATATTCTGTACGTACAATCTCGCATTTGGAGAAAACGGCAAGAACGTCTC
CCAGTCTCTCTCCAAACGGAATCGGTTTTGAAGTTGTAGGTGGTGGATAG
ATCGGGGATGGAAAATCGGAATCAAGCCGGTAAGAGATCAACAAATTGAA
TTTGNCCCAGTCTCTCTCCAAACGGAATCGGTTTTGAAGTTGTTGGTGGT
GGATAGATCGGGGATGGAAAATCGGAATCAAGCCGGTATGAGATCAACAG
ATTGAATTTACTCATTATTCGAGGGTCAGTCAGAGCAGGTGTGTAGACTG
GATTCTCGTTGTTTTGTAAAATCCACGGGGCTAGATGTTCTAATGGTGGA
TGATCGTTCACATCTGTCAAACGGGAATGGACAACAAAAGCGTCCGCTTC
ATGTGCGCGCGACCGATCGTTGATAAGCTCACAGCTAACCGGACATTCAC
CTTTTTCTCCCGCATACGTATACGGCCATACGTGATTGTCCTTTACgtat
tccgccttcttctgTATACGCGCCTTGTGGTCACGAATCTTTGACCAGTA
taatatgacgtaatgttttctagtATTTGCCGTGGCGTTTGACCAGGCCT
CCGCGTTAAACGGCTCTCCGAGGCTAGGTTTACGTCTCCGTCGTTTCTGG
CGAGCATGGTAGAGCTCTTTACGAACATTCCTAGACCTAGTGCTCAGTTT
TTGACTGGACGAAACGCTGTTGTCCACGCTTgtccaaaaatgataaaata
caccaacaaacaacaacacaattaaaagtaaaataagCTTGCACATCATG
CTCATGTCTTTTGTCCGGCTTTTGACCAGACCGCATAAACATCGACGCTT
TATGTCACTTACACATGACTTTTCACCACGGTATAGCCTACAACCTAAGC
ACGTACCGATACAGCGTAGGCTAGATGTCATGGAGTCTATCGATTTGTAT
GCTTTTTTCTGTCCTGACCCACCAAGTTTTATTAGTTCTTTGTCATGTTC
ATTTAGGGCAGACATCATGGttcttcttcaaatatttttgccgaagcttt
tgattttctctgtgatttttgaaatcaaagtccTGGTTATAAAGCAAATC
AACGAATCGGTTGTGTCTTGAAAACCTTGACCAAATCCAACTCCAATATC
AAACTCGACTTGTAATCAATAACGTGCACAGTTTGAATTGATCATACAAT
ACACTTATAAATTTC Run BLAST on NCBI transcript from alignment at sc0000061:336355..338319+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005842 ID=TCONS_00005842|Name=TCONS_00005842|organism=Clytia hemisphaerica|type=transcript|length=1965bp|location=Sequence derived from alignment at sc0000061:336355..338319+ (Clytia hemisphaerica)
ACGGTCGTACGTAGATAATTCCATTTagttttttatataatataccTCTG
ATGGTTCATATTATCTGAGTAGGTGACCAAAAGAGCAATATAAAACAACC
AGCAATATTATCCCCATAATACTCCACACATTTGTTATATCTACTTCTAC
ATAATGTTCGGCGTAAACGTCACCATGATCATTATCTCCGTAAGGTGGTA
ATAAGTTCCAATCTTTATATTCCCGGGGTCGACAAGTGTCAATATCAAGC
CCTGGGTGTAAATTCCCTTGAGATAATCTCATGCATACCTGACAGAAGAG
CGGATACTTTTGTTTCCACCAGCGGCCGATTGTTGTATTGCTCATATCAC
CTATACCAATTTCCTTCCATTTCAGGTATTCATTGAAAGCAGTCTCATTC
CCACTCAAGTATTTCAAATAATCGGCTAACTTTTTCGGGGAACTAAAATC
GGAAACACGGATTATGGAGTTCTTCAAATTACCCGGTAAGAATTGATCTA
TTTTATCTGTGCCCATGTAGACAGGGATTGAACCAGTTTCTAAGGCATGG
TATAGACGGTCATCTACAAAATGATCACAATCTTGGTTCATGAAAACTAA
TGAGAACTTATAAAATCGGGTTAATACGACTTTGTAATCTTTAAAAACGT
ATTTCCCGTTTATGTGACCATACAACCCAATTAAACCATCCCGGTTTTTC
AGGCATGCGCCGTATGAGTGAACGTCTATGTATTTCATAAGTTGCCGCAT
ATATTCTGTACGTACAATCTCGCATTTGGAGAAAACGGCAAGAACGTCTC
CCAGTCTCTCTCCAAACGGAATCGGTTTTGAAGTTGTAGGTGGTGGATAG
ATCGGGGATGGAAAATCGGAATCAAGCCGGTAAGAGATCAACAAATTGAA
TTTGNCCCAGTCTCTCTCCAAACGGAATCGGTTTTGAAGTTGTTGGTGGT
GGATAGATCGGGGATGGAAAATCGGAATCAAGCCGGTATGAGATCAACAG
ATTGAATTTACTCATTATTCGAGGGTCAGTCAGAGCAGGTGTGTAGACTG
GATTCTCGTTGTTTTGTAAAATCCACGGGGCTAGATGTTCTAATGGTGGA
TGATCGTTCACATCTGTCAAACGGGAATGGACAACAAAAGCGTCCGCTTC
ATGTGCGCGCGACCGATCGTTGATAAGCTCACAGCTAACCGGACATTCAC
CTTTTTCTCCCGCATACGTATACGGCCATACGTGATTGTCCTTTACgtat
tccgccttcttctgTATACGCGCCTTGTGGTCACGAATCTTTGACCAGTA
taatatgacgtaatgttttctagtATTTGCCGTGGCGTTTGACCAGGCCT
CCGCGTTAAACGGCTCTCCGAGGCTAGGTTTACGTCTCCGTCGTTTCTGG
CGAGCATGGTAGAGCTCTTTACGAACATTCCTAGACCTAGTGCTCAGTTT
TTGACTGGACGAAACGCTGTTGTCCACGCTTgtccaaaaatgataaaata
caccaacaaacaacaacacaattaaaagtaaaataagCTTGCACATCATG
CTCATGTCTTTTGTCCGGCTTTTGACCAGACCGCATAAACATCGACGCTT
TATGTCACTTACACATGACTTTTCACCACGGTATAGCCTACAACCTAAGC
ACGTACCGATACAGCGTAGGCTAGATGTCATGGAGTCTATCGATTTGTAT
GCTTTTTTCTGTCCTGACCCACCAAGTTTTATTAGTTCTTTGTCATGTTC
ATTTAGGGCAGACATCATGGttcttcttcaaatatttttgccgaagcttt
tgattttctctgtgatttttgaaatcaaagtccTGGTTATAAAGCAAATC
AACGAATCGGTTGTGTCTTGAAAACCTTGACCAAATCCAACTCCAATATC
AAACTCGACTTGTAATCAATAACGTGCACAGTTTGAATTGATCATACAAT
ACACTTATAAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005842-exon-sc0000061-1491911889:336355..338319 | TCONS_00005842-exon-sc0000061-1491911889:336355..338319 | Clytia hemisphaerica | exon |
| TCONS_00005842-exon-sc0000061-1510915933:336355..338319 | TCONS_00005842-exon-sc0000061-1510915933:336355..338319 | Clytia hemisphaerica | exon |
| TCONS_00005842-exon-sc0000061-1575043694:336355..338319 | TCONS_00005842-exon-sc0000061-1575043694:336355..338319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:336355..338319 + |
Blast
BLAST of TCONS_00005842 vs. Swiss-Prot (Human)
Match: FUT11 (Alpha-(1,3)-fucosyltransferase 11 OS=Homo sapiens GN=FUT11 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.983e-21 Identity = 58/195 (29.74%), Postives = 102/195 (52.31%), Query Frame = -1
Query: 355 FNLLISYRLDSDFPSPIYPPPTTS---KPIPFG-ERL-------GDVLAVFSKCEIV--RTEYMRQLMKYIDVHSYGACLKNRDGLIGLYGHINGKYVFKDYKVVLTRFYKFSLVFMNQDCDHFVDDRLYHALETGSIPVYMGTDKIDQFLPGNLKNSIIRVSDFSSPKKLADYLKYLSGNETAFNEYLKWKEIG 900
FNL ++ SD+P + P T+ +P+P ER +L + S C++ R Y+R+LM++I V SYG CL+NR+ + YKF L N C+ ++ ++L+ + G++PVY G+ + ++P N +S+I + DF SP+KLA+++ +L N+ + +YL +K+ G
Sbjct: 165 FNLTSTFSRHSDYPLSLQWLPGTAYLRRPVPPPMERAEWRRRGYAPLLYLQSHCDVPADRDRYVRELMRHIPVDSYGKCLQNRELPTARLQDTATATTEDPELLAFLSRYKFHLALENAICNDYMTEKLWRPMHLGAVPVYRGSPSVRDWMPNN--HSVILIDDFESPQKLAEFIDFLDKNDEEYMKYLAYKQPG 357
The following BLAST results are available for this feature:
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