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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005841 ID=TCONS_00005841|Name=TCONS_00005841|organism=Clytia hemisphaerica|type=transcript|length=3085bpRun BLAST on NCBI protein sequence of TCONS_00005841-protein >TCONS_00005841-protein ID=TCONS_00005841-protein|Name=TCONS_00005841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp MIGVKHLVSKKKRRYIEDGFDLDLAYIKPNIIAMGFPSENLEGVYRNNFERun BLAST on NCBI transcript from alignment at sc0000061:278514..294116+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005841 ID=TCONS_00005841|Name=TCONS_00005841|organism=Clytia hemisphaerica|type=transcript|length=15603bp|location=Sequence derived from alignment at sc0000061:278514..294116+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:278514..294116+ >TCONS_00005841 ID=TCONS_00005841|Name=TCONS_00005841|organism=Clytia hemisphaerica|type=CDS|length=18369bp|location=Sequence derived from alignment at sc0000061:278514..294116+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005841 vs. Swiss-Prot (Human)
Match: PTEN (Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Homo sapiens GN=PTEN PE=1 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 2.540e-106 Identity = 168/353 (47.59%), Postives = 231/353 (65.44%), Query Frame = 2
Query: 140 VKHLVSKKKRRYIEDGFDLDLAYIKPNIIAMGFPSENLEGVYRNNFEDVIKFLEFKHKDKYRVYNLCSERNYDESKFHGRVGNYGFDDHNAPPFNLIEPCCKDVDAWLSRGEEFTACIHCKAGKGRTGVMICCYLLYKKMFLSAKDAMDHYAKARTANDKGVTIPSQRRYITYFGYYMRHSLGEKEATKYSPVPVLLNSITFVGTPTFNSSGTCTPSFVIYQTGVALFKSKPYEVRKSESSPTVLTLDREIPVCGDIKIDFFHHNNR-FRKERMFVFWFNTFFLKHGVTLTHPEEGGG----------TITTARTEKGDIITYSLEQDELDKANKDKKHKFFPQGFRIELNIT 1165
+K +VS+ KRRY EDGFDLDL YI PNIIAMGFP+E LEGVYRNN +DV++FL+ KHK+ Y++YNLC+ER+YD +KF+ RV Y F+DHN P LI+P C+D+D WLS + A IHCKAGKGRTGVMIC YLL++ FL A++A+D Y + RT + KGVTIPSQRRY+ Y+ Y +++ L Y PV +L + + F P F S GTC P FV+ Q V ++ S R+ E + +PVCGDIK++FFH N+ +K++MF FW NTFF+ + E G +I A +K + + +L +++LDKANKDK +++F F+++L T
Sbjct: 5 IKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLD------YRPVALLFHKMMFETIPMF-SGGTCNPQFVVCQLKVKIYSSNSGPTRR-EDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEETSEKVENGSLCDQEIDSICSIERADNDK-EYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFT 348 The following BLAST results are available for this feature:
BLAST of TCONS_00005841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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