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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005831 ID=TCONS_00005831|Name=TCONS_00005831|organism=Clytia hemisphaerica|type=transcript|length=1386bp
GAAATTGGATAATATTCTGAAATGTGAGGCTGAAataaaaaacagccaaa
attgaattttattaCTACAAATTTAAGGGAAAGTGGCCAAAATAAGTTAC
TAAGTAAATTACTCCTTACAAATTGTAGCCTCAACGACTCGCACTCAGTA
TAATTCAAATTAAATTAAGTAGAATTGGACGCAAACGACATTTTCGAACG
AGCTCACTTTCAGCATGATGTATTTCTTGAGACATTCGAATAGTAATTTT
TcgaacgaaaaaaaataatcaaaagtaTGTTATTGTTTGTGAGAAATAAA
TAATTactatatttattttttttgtttgcagattccaaattacaaaaaat
tttagtaaaactttattattatttgaaatatttttgtatttttcctgAAA
TAGATATTTAGATGGAGATTAtcaaaaatgttacaaaattaAATGAATTG
TGTTGATTTTGAGTATGTTTGTATCATGGTAAAACAGTCCTCTGGAAATG
AAGTGTATCTTTGGTAGCAGTTTTTATCCATTATTTTGGGCTTGGCTTTT
AGCTTTACTCTTAACTGGGCCAATATTGATCGATGGACGAAGCTATAAAG
GTCTTACAAGGCCGCACTCGTCACCAAATGAGAAAAATGTTAAACGGAGG
TCTGGAATTGAATCGAACCCAGTAAAATCGAGCGCTTTCCAAGAAGTGAA
AATTGATACTTCAAAACTTTACAATGAGCTATTAAAAGCGatcaaaaaag
acaaaactCCTCACGTACATCAACGACAACGAGGTGCTGTAAAAAGTAAT
ACAAAGCCGTCAACGAGTAAACGCAATGAAAAACATTCACCGTCTATTGG
CTACTTTATGAACTTGAAACAAAAGGCTGGAAAGCCTTCGAGTAACAGAC
AATTGATTGAGTATGCCTTACCTATTCAACAGCAGGCTACAAATGACCCT
TATTGGGGGTCTATGGGCAGGCCTATGGAAACCTCTCCAATCATTAGTGA
ATCAGTTCCGATTTCACCTACACAAGCTATGTTCCAATCGTTCAATAGGG
TGGTTAGCCAAAATACGCCCACTATCTATTTAAACCCACCACCATCGGGC
GGCAGCTCTTTTGAAACTCATTCTCAGCAACAAACTACGAAATCAATCAC
TTCaaataaaccaaaaacaacaaaaaaggagACCCAGATCTTCCATTTAC
CGACACCAAAACCATTTGTGGCAGTTCACCATGCACCAATCACGAAGACG
TTTGAAGAGAGTAAAGTTTCTTCTTCTAGAGAAACGCACTTGGAGAAAGG
AGGCAGCAAGAGGGTCTATTCCCTAGGAGACAATGTCTTCACAGACGTCG
GTTGTTTCTTGGACAAGTGGATCAGATCCATACCNC Run BLAST on NCBI transcript from alignment at sc0000061:136006..138035+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005831 ID=TCONS_00005831|Name=TCONS_00005831|organism=Clytia hemisphaerica|type=transcript|length=2030bp|location=Sequence derived from alignment at sc0000061:136006..138035+ (Clytia hemisphaerica)
GAAATTGGATAATATTCTGAAATGTGAGGCTGAAataaaaaacagccaaa
attgaattttattaCTACAAATTTAAGGGAAAGTGGCCAAAATAAGTTAC
TAAGTAAATTACTCCTTACAAATTGTAGCCTCAACGACTCGCACTCAGTA
TAATTCAAATTAAATTAAGTAGAATTGGACGCAAACGACATTTTCGAACG
AGCTCACTTTCAGCATGATGTATTTCTTGAGACATTCGAATAGTAATTTT
TcgaacgaaaaaaaataatcaaaagtaTGTTATTGTTTGTGAGAAATAAA
TAATTactatatttattttttttgtttgcagattccaaattacaaaaaat
tttagtaaaactttattattatttgaaatatttttgtatttttcctgAAA
TAGATATTTAGATGGAGATTAtcaaaaatgttacaaaattaAATGAATTG
TGTTGATTTTGAGTATGTTTGTATCATGGTAAAACAGTCCTCTGGAAATG
AAGTGTATCTTTGGTAGCAGTTTTTATCCATTATTTTGGGCTTGGCTTTT
AGCTTTACTCTTAACTGGGCCAATATTGATCGATGGACGAAGCTATAAAG
GTATGTGGCGAAGCCCTATTTTGAAGCCCTTTGAAGCTATAAAGGTTGAA
ATAGAGGCCGCGTGGGATCTATATAATTCGAACTCCAAGGGTATTACACA
TTCCAGGGTCTTgagatttttttgtcaaatagaGGGGGTATCAAGGAGAG
TGCATTTAGAAGGGGTCTGCATGAAGTCTTCATTTCCCGTCAAGATTGTG
CCTCCTTTTTTTACTTTACACAATTCTCTAGATGTGTCAGTTTTTTGACG
CCCCAAGGAATTGTACACGgataaatagaccttttcatataTTAAATCTT
GAGCGTAGTGGCGATTGAGCGGCCGGGAGGGCAATTTTTCAACGAATTTT
TGGTTCACAAACCGTGTTCTGAGGCCAAATACACGAAAGCTAATATTGGG
TTCAAACTAACGATTTTTTTAACAGTTGTTATTTGATATAATTTAGGTCT
TACAAGGCCGCACTCGTCACCAAATGAGAAAAATGTTAAACGGAGGTCTG
GAATTGAATCGAACCCAGTAAAATCGAGCGCTTTCCAAGAAGTGAAAATT
GATACTTCAAAACTTTACAATGAGCTATTAAAAGCGatcaaaaaagacaa
aactCCTCACGTACATCAACGACAACGAGGTGCTGTAAAAAGTAATACAA
AGCCGTCAACGAGTAAACGCAATGAAAAACATTCACCGTCTATTGGCTAC
TTTATGAACTTGAAACAAAAGGCTGGAAAGCCTTCGAGTAACAGACAATT
GATTGAGTATGCCTTACCTATTCAACAGCAGGCTACAAATGACCCTTATT
GGGGGTCTATGGGCAGGCCTATGGAAACCTCTCCAATCATTAGTGAATCA
GTTCCGATTTCACCTACACAAGCTATGTTCCAATCGTTCAATAGGGTGGT
TAGCCAAAATACGCCCACTATCTATTTAAACCCACCACCATCGGGCGGCA
GCTCTTTTGAAACTCATTCTCAGCAACAAACTACGAAATCAATCACTTCa
aataaaccaaaaacaacaaaaaaggagACCCAGATCTTCCATTTACCGAC
ACCAAAACCATTTGTGGCAGTTCACCATGCACCAATCACGAAGACGTTTG
AAGAGAGTAAAGTTTCTTCTTCTAGAGAAACGCACTTGGAGAAAGGAGGC
AGCAAGAGGGTCTATTCCCTAGGAGACAATGGTATGTACAACGTAATGTG
ACAGTTTTTTCTTGAAAGATCATTTAGTGAACCCAGGAAACTACAGCCGA
TTATTTGGGTGACGTTATATTGTCTTCCACGGCTACGACTACCCAAATTT
TATTGACCACCCTCTTCCAGACTGTGTTCTTTATTCTATTGACTATATCA
TAATTCCTCTTTAACAACTATTTTTCTAGTCTTCACAGACGTCGGTTGTT
TCTTGGACAAGTGGATCAGATCCATACCNC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005831-exon-sc0000061-1491911889:136006..136605 | TCONS_00005831-exon-sc0000061-1491911889:136006..136605 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1510915933:136006..136605 | TCONS_00005831-exon-sc0000061-1510915933:136006..136605 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1575043694:136006..136605 | TCONS_00005831-exon-sc0000061-1575043694:136006..136605 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1491911889:137052..137786 | TCONS_00005831-exon-sc0000061-1491911889:137052..137786 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1510915933:137052..137786 | TCONS_00005831-exon-sc0000061-1510915933:137052..137786 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1575043694:137052..137786 | TCONS_00005831-exon-sc0000061-1575043694:137052..137786 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1491911889:137985..138035 | TCONS_00005831-exon-sc0000061-1491911889:137985..138035 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1510915933:137985..138035 | TCONS_00005831-exon-sc0000061-1510915933:137985..138035 | Clytia hemisphaerica | exon |
| TCONS_00005831-exon-sc0000061-1575043694:137985..138035 | TCONS_00005831-exon-sc0000061-1575043694:137985..138035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:136006..138035 + |
Blast
The following BLAST results are available for this feature:
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