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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005830 ID=TCONS_00005830|Name=TCONS_00005830|organism=Clytia hemisphaerica|type=transcript|length=1131bp
CGAAAGAACTTCTCGAGAGCAGttGACAAAATCATGGCGGAGAGGATTTT
CACTTTGACTTCTGTTCGTCAtccagtccaacatttcatttcattgttcc
GACAGATGAAAATACAAGAGGTTGTGCAACGCGTTACAAGTCGCAAAGGG
TTGACAGAGAACCAAGCTATGGAGATATTTCTTAAAGATTGGGAAGATTT
TCAAAGAGCATACGCAACAGATGAAAACATAGGGATTGGTGAAAAGTTAC
ATTTAGGAATGATCAGATCAAATTTACAATCGTTTAGCCTGGGAATAACA
GATGTGATGTCTTTAGAGGATGTAGTACACAGGCTAAATGAGATGAACCT
TATAGTTGTTTTTGAACGATTTGATGAATCAATGGTCATTTTGAGAGAAA
AGCTATGCTGCTCTTTAGATGATGTAGCGTACCGAAAGCTACCGAATCAT
GAAACATCAAGCACAGTCTACGTACCAGAGGAACTTCAAAGACTCATcat
aaatttcaataaaattgatgcTATTTTCTATCAACATGCAGTTAAACGAC
TAGACGAAGAGATGTCAGCGTTTGACAATTTTGAACAACTTTTGGGGATT
TATCGAGCAGAACTAAAGAAGTTCGAAGCTAAATGCACGGACCCGAATTT
CCCTGCACAATTTAGGAACAAAATATGCCCACCTGTTGAAGGGGGTCAGT
TAGAGACATTTGTAAACGACGTGCGAAAGgaacaaaaaatgattttatta
gATAAATTGAGGCGCCGTTTTAGTAAGAAACATTTACATTCATagctttt
attcaaattttataaaataactttatGGTCAATGGTCAATGTATCTTTAA
GCCCTATGCAAAGTGTGATGGTTCGAGTTATAAGGTCTGAATGGCACTAA
CAGGTGGGCAATAACTTCTACTTTGTGAGAAGATCACTGCACCCTGGTAA
ACTGGTACTTAATCCTTTTAAACATAGCTTCAATCGCCAAAGGTTGTAAA
ATAGCAAAGTTCGTATAATAGTAGATTCAAAATGCTCGATAATATAATTT
ACAATGAAATTGGATAATCATTTTAAATGTGAGGGTGAGATAAAAACAGC
CCAAATTGAATTTTATTACCAcaaatttaag Run BLAST on NCBI transcript from alignment at sc0000061:133805..135951+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005830 ID=TCONS_00005830|Name=TCONS_00005830|organism=Clytia hemisphaerica|type=transcript|length=2147bp|location=Sequence derived from alignment at sc0000061:133805..135951+ (Clytia hemisphaerica)
CGAAAGAACTTCTCGAGAGCAGGTATGaagaatttcaaagttgggGTAAA
GAGCTCATAAACGGTGAAACAAATAGTCACGTGGCACGCTATGAGCCAAT
CAAATGTGGTGTTAAGAGTAAACCACACCGCTCAATtttctatataagaa
cacatcGTGCCGCTTCGACAACCTTGAGAAATATGTTACTGATATATGGG
AGAGAATATAATTTGACTATATGTATGGACGTACTGGACCTCCATCGGGC
GAACTGGCCCTATGGAGTCGATGTATCTCGACTGACGAAAACTAGTAATG
AAAGATGCCAGCTGGTAGCAGAGGAAATTATGTACTCAAGTAAATTAGGT
AACATTATCAAGGATTAATTAGTTTGATCGTGAATCAAATAAAAGATTTA
TGTTGAAAAATGCGAGGAGGGGTGAATGGGGGGTCTTGTCAAAGAAAACA
AATACAATAGGTATTAGGTCGTTATTGAACCAAAGATTCATTGAAACCGT
ACATTGTAACCCATCACCCACCACTTAGTTAATTTTACCAGAGCAACCCT
GTGTTTTTGGAGGGTTAatgaagtcacgaaagatgacTCATTACAAACAG
TCGCTTCATATCTTGTTTTTATACTTGCTGCTTTTACTTTTacgttttga
tttttggaatatAATTAACGGGGGGATTGACCAATTTACCAGATTAGAGA
CTTTActtgaaagccttaaaaaagGCTAGAAGTAGACTAAAATTAGGATT
AATAAAGTAAGGCAGCAAACTCTTTATAGCTCTACTAACTCCCGGGGGTC
AGAAAAAAAGGATAATTCATCTTCGAGTACACGcgttttttacaagaatg
tTGTTTCCCCATTTATTCATCTCCGTTAATTCTTAACTTTAAGGGGAAAA
TCACCCTAAAATATTCTGGCGGTATGTCCAATGTTAAAGTGAATATTCTT
AAACAGTACATTCTTATATAAAACGGGCTGTTCCCCGATGGTGCCTGATC
TCTTCTACATTCTCTTCTttcatattttacttttttagttGACAAAATCA
TGGCGGAGAGGATTTTCACTTTGACTTCTGTTCGTCAtccagtccaacat
ttcatttcattgttccGACAGATGAAAATACAAGAGGTTGTGCAACGCGT
TACAAGTCGCAAAGGGTTGACAGAGAACCAAGCTATGGAGATATTTCTTA
AAGATTGGGAAGATTTTCAAAGAGCATACGCAACAGATGAAAACATAGGG
ATTGGTGAAAAGTTACATTTAGGAATGATCAGATCAAATTTACAATCGTT
TAGCCTGGGAATAACAGATGTGATGTCTTTAGAGGATGTAGTACACAGGC
TAAATGAGATGAACCTTATAGTTGTTTTTGAACGATTTGATGAATCAATG
GTCATTTTGAGAGAAAAGCTATGCTGCTCTTTAGATGATGTAGCGTACCG
AAAGCTACCGAATCATGAAACATCAAGCACAGTCTACGTACCAGAGGAAC
TTCAAAGACTCATcataaatttcaataaaattgatgcTATTTTCTATCAA
CATGCAGTTAAACGACTAGACGAAGAGATGTCAGCGTTTGACAATTTTGA
ACAACTTTTGGGGATTTATCGAGCAGAACTAAAGAAGTTCGAAGCTAAAT
GCACGGACCCGAATTTCCCTGCACAATTTAGGAACAAAATATGCCCACCT
GTTGAAGGGGGTCAGTTAGAGACATTTGTAAACGACGTGCGAAAGgaaca
aaaaatgattttattagATAAATTGAGGCGCCGTTTTAGTAAGAAACATT
TACATTCATagcttttattcaaattttataaaataactttatGGTCAATG
GTCAATGTATCTTTAAGCCCTATGCAAAGTGTGATGGTTCGAGTTATAAG
GTCTGAATGGCACTAACAGGTGGGCAATAACTTCTACTTTGTGAGAAGAT
CACTGCACCCTGGTAAACTGGTACTTAATCCTTTTAAACATAGCTTCAAT
CGCCAAAGGTTGTAAAATAGCAAAGTTCGTATAATAGTAGATTCAAAATG
CTCGATAATATAATTTACAATGAAATTGGATAATCATTTTAAATGTGAGG
GTGAGATAAAAACAGCCCAAATTGAATTTTATTACCAcaaatttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005830-exon-sc0000061-1491911889:133805..133826 | TCONS_00005830-exon-sc0000061-1491911889:133805..133826 | Clytia hemisphaerica | exon |
| TCONS_00005830-exon-sc0000061-1510915933:133805..133826 | TCONS_00005830-exon-sc0000061-1510915933:133805..133826 | Clytia hemisphaerica | exon |
| TCONS_00005830-exon-sc0000061-1575043694:133805..133826 | TCONS_00005830-exon-sc0000061-1575043694:133805..133826 | Clytia hemisphaerica | exon |
| TCONS_00005830-exon-sc0000061-1491911889:134843..135951 | TCONS_00005830-exon-sc0000061-1491911889:134843..135951 | Clytia hemisphaerica | exon |
| TCONS_00005830-exon-sc0000061-1510915933:134843..135951 | TCONS_00005830-exon-sc0000061-1510915933:134843..135951 | Clytia hemisphaerica | exon |
| TCONS_00005830-exon-sc0000061-1575043694:134843..135951 | TCONS_00005830-exon-sc0000061-1575043694:134843..135951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:133805..135951 + |
Blast
The following BLAST results are available for this feature:
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