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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005829 ID=TCONS_00005829|Name=TCONS_00005829|organism=Clytia hemisphaerica|type=transcript|length=1952bp
aagaaatgtaAGAAAAATAACGCAGAATTGTACAATAATTACAGCTACGT
GGACCTCTTTAGTATAATAATTACTGCATGAAAATCAAATGATCACAAAG
AAGTTTTAATTGCACTACAGCTATCATGAGAATGCAAAAATCTATCTCAG
TGTTTAGAAATACGaacagaaaattttaaagaagtttggttcatttgaac
aagattgggagATGATCTGAGACAGACAATCCAATGCAGTAATCACAACT
ATCATTTATATGAGAGCAATCCTACCACCGTNAATCCAATGCAGTAATCA
CAACTATCATTTATATGAGAGCAAATCCTACCACCGTGTCAAGAATGCGT
ACTAAATGCAAATGTGGGTACAGTTTTTGCCTGCTACTCCTTTTAGCTTT
ATATTCAACGTTAATCCAGTTACCAAATTTCCATGAAATATTTTCCCGTA
AACACGGCAACATCACACACGTCATCGGAACAACTTTGCACAAATCGAAA
GAACTTCTCGAGAGCAGGTATGaagaatttcaaagttgggGTAAAGAGCT
CATAAACGGTGAAACAAATAGTCACGTGGCACGCTATGAGCCAATCAAAT
GTGGTGTTAAGAGTAAACCACACCGCTCAATtttctatataagaacacat
cGTGCCGCTTCGACAACCTTGAGAAATATGTTACTGATATATGGGAGAGA
ATATAATTTGACTATATGTATGGACGTACTGGACCTCCATCGGGCGAACT
GGCCCTATGGAGTCGATGTATCTCGACTGACGAAAACTAGTAATGAAAGA
TGCCAGCTGGTAGCAGAGGAAATTATGTACTCAAGTAAATTAGttGACAA
AATCATGGCGGAGAGGATTTTCACTTTGACTTCTGTTCGTCAtccagtcc
aacatttcatttcattgttccGACAGATGAAAATACAAGAGGTTGTGCAA
CGCGTTACAAGTCGCAAAGGGTTGACAGAGAACCAAGCTATGGAGATATT
TCTTAAAGATTGGGAAGATTTTCAAAGAGCATACGCAACAGATGAAAACA
TAGGGATTGGTGAAAAGTTACATTTAGGAATGATCAGATCAAATTTACAA
TCGTTTAGCCTGGGAATAACAGATGTGATGTCTTTAGAGGATGTAGTACA
CAGGCTAAATGAGATGAACCTTATAGTTGTTTTTGAACGATTTGATGAAT
CAATGGTCATTTTGAGAGAAAAGCTATGCTGCTCTTTAGATGATGTAGCG
TACCGAAAGCTACCGAATCATGAAACATCAAGCACAGTCTACGTACCAGA
GGAACTTCAAAGACTCATcataaatttcaataaaattgatgcTATTTTCT
ATCAACATGCAGTTAAACGACTAGACGAAGAGATGTCAGCGTTTGACAAT
TTTGAACAACTTTTGGGGATTTATCGAGCAGAACTAAAGAAGTTCGAAGC
TAAATGCACGGACCCGAATTTCCCTGCACAATTTAGGAACAAAATATGCC
CACCTGTTGAAGGGGGTCAGTTAGAGACATTTGTAAACGACGTGCGAAAG
gaacaaaaaatgattttattagATAAATTGAGGCGCCGTTTTAGTAAGAA
ACATTTACATTCATagcttttattcaaattttataaaataactttatGGT
CAATGGTCAATGTATCTTTAAGCCCTATGCAAAGTGTGATGGTTCGAGTT
ATAAGGTCTGAATGGCACTAACAGGTGGGCAATAACTTCTACTTTGTGAG
AAGATCACTGCACCCTGGTAAACTGGTACTTAATCCTTTTAAACATAGCT
TCAATCGCCAAAGGTTGTAAAATAGCAAAGTTCGTATAATAGTAGATTCA
AAATGCTCGATAATATAATTTACAATGAAATTGGATAATCATTTTAAATG
TGAGGGTGAGATAAAAACAGCCCAAATTGAATTTTATTACCAcaaattta
ag Run BLAST on NCBI protein sequence of TCONS_00005829-protein >TCONS_00005829-protein ID=TCONS_00005829-protein|Name=TCONS_00005829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
MRANPTTVSRMRTKCKCGYSFCLLLLLALYSTLIQLPNFHEIFSRKHGNI
THVIGTTLHKSKELLESRYEEFQSWGKELINGETNSHVARYEPIKCGVKS
KPHRSIFYIRTHRAASTTLRNMLLIYGREYNLTICMDVLDLHRANWPYGV
DVSRLTKTSNERCQLVAEEIMYSSKLVDKIMAERIFTLTSVRHPVQHFIS
LFRQMKIQEVVQRVTSRKGLTENQAMEIFLKDWEDFQRAYATDENIGIGE
KLHLGMIRSNLQSFSLGITDVMSLEDVVHRLNEMNLIVVFERFDESMVIL
REKLCCSLDDVAYRKLPNHETSSTVYVPEELQRLIINFNKIDAIFYQHAV
KRLDEEMSAFDNFEQLLGIYRAELKKFEAKCTDPNFPAQFRNKICPPVEG
GQLETFVNDVRKEQKMILLDKLRRRFSKKHLHS Run BLAST on NCBI transcript from alignment at sc0000061:133310..135951+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005829 ID=TCONS_00005829|Name=TCONS_00005829|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at sc0000061:133310..135951+ (Clytia hemisphaerica)
aagaaatgtaAGAAAAATAACGCAGAATTGTACAATAATTACAGCTACGT
GGACCTCTTTAGTATAATAATTACTGCATGAAAATCAAATGATCACAAAG
AAGTTTTAATTGCACTACAGCTATCATGAGAATGCAAAAATCTATCTCAG
TGTTTAGAAATACGaacagaaaattttaaagaagtttggttcatttgaac
aagattgggagATGATCTGAGACAGACAATCCAATGCAGTAATCACAACT
ATCATTTATATGAGAGCAATCCTACCACCGTNAATCCAATGCAGTAATCA
CAACTATCATTTATATGAGAGCAAATCCTACCACCGTGTCAAGAATGCGT
ACTAAATGCAAATGTGGGTACAGTTTTTGCCTGCTACTCCTTTTAGCTTT
ATATTCAACGTTAATCCAGTTACCAAATTTCCATGAAATATTTTCCCGTA
AACACGGCAACATCACACACGTCATCGGAACAACTTTGCACAAATCGAAA
GAACTTCTCGAGAGCAGGTATGaagaatttcaaagttgggGTAAAGAGCT
CATAAACGGTGAAACAAATAGTCACGTGGCACGCTATGAGCCAATCAAAT
GTGGTGTTAAGAGTAAACCACACCGCTCAATtttctatataagaacacat
cGTGCCGCTTCGACAACCTTGAGAAATATGTTACTGATATATGGGAGAGA
ATATAATTTGACTATATGTATGGACGTACTGGACCTCCATCGGGCGAACT
GGCCCTATGGAGTCGATGTATCTCGACTGACGAAAACTAGTAATGAAAGA
TGCCAGCTGGTAGCAGAGGAAATTATGTACTCAAGTAAATTAGGTAACAT
TATCAAGGATTAATTAGTTTGATCGTGAATCAAATAAAAGATTTATGTTG
AAAAATGCGAGGAGGGGTGAATGGGGGGTCTTGTCAAAGAAAACAAATAC
AATAGGTATTAGGTCGTTATTGAACCAAAGATTCATTGAAACCGTACATT
GTAACCCATCACCCACCACTTAGTTAATTTTACCAGAGCAACCCTGTGTT
TTTGGAGGGTTAatgaagtcacgaaagatgacTCATTACAAACAGTCGCT
TCATATCTTGTTTTTATACTTGCTGCTTTTACTTTTacgttttgattttt
ggaatatAATTAACGGGGGGATTGACCAATTTACCAGATTAGAGACTTTA
cttgaaagccttaaaaaagGCTAGAAGTAGACTAAAATTAGGATTAATAA
AGTAAGGCAGCAAACTCTTTATAGCTCTACTAACTCCCGGGGGTCAGAAA
AAAAGGATAATTCATCTTCGAGTACACGcgttttttacaagaatgtTGTT
TCCCCATTTATTCATCTCCGTTAATTCTTAACTTTAAGGGGAAAATCACC
CTAAAATATTCTGGCGGTATGTCCAATGTTAAAGTGAATATTCTTAAACA
GTACATTCTTATATAAAACGGGCTGTTCCCCGATGGTGCCTGATCTCTTC
TACATTCTCTTCTttcatattttacttttttagttGACAAAATCATGGCG
GAGAGGATTTTCACTTTGACTTCTGTTCGTCAtccagtccaacatttcat
ttcattgttccGACAGATGAAAATACAAGAGGTTGTGCAACGCGTTACAA
GTCGCAAAGGGTTGACAGAGAACCAAGCTATGGAGATATTTCTTAAAGAT
TGGGAAGATTTTCAAAGAGCATACGCAACAGATGAAAACATAGGGATTGG
TGAAAAGTTACATTTAGGAATGATCAGATCAAATTTACAATCGTTTAGCC
TGGGAATAACAGATGTGATGTCTTTAGAGGATGTAGTACACAGGCTAAAT
GAGATGAACCTTATAGTTGTTTTTGAACGATTTGATGAATCAATGGTCAT
TTTGAGAGAAAAGCTATGCTGCTCTTTAGATGATGTAGCGTACCGAAAGC
TACCGAATCATGAAACATCAAGCACAGTCTACGTACCAGAGGAACTTCAA
AGACTCATcataaatttcaataaaattgatgcTATTTTCTATCAACATGC
AGTTAAACGACTAGACGAAGAGATGTCAGCGTTTGACAATTTTGAACAAC
TTTTGGGGATTTATCGAGCAGAACTAAAGAAGTTCGAAGCTAAATGCACG
GACCCGAATTTCCCTGCACAATTTAGGAACAAAATATGCCCACCTGTTGA
AGGGGGTCAGTTAGAGACATTTGTAAACGACGTGCGAAAGgaacaaaaaa
tgattttattagATAAATTGAGGCGCCGTTTTAGTAAGAAACATTTACAT
TCATagcttttattcaaattttataaaataactttatGGTCAATGGTCAA
TGTATCTTTAAGCCCTATGCAAAGTGTGATGGTTCGAGTTATAAGGTCTG
AATGGCACTAACAGGTGGGCAATAACTTCTACTTTGTGAGAAGATCACTG
CACCCTGGTAAACTGGTACTTAATCCTTTTAAACATAGCTTCAATCGCCA
AAGGTTGTAAAATAGCAAAGTTCGTATAATAGTAGATTCAAAATGCTCGA
TAATATAATTTACAATGAAATTGGATAATCATTTTAAATGTGAGGGTGAG
ATAAAAACAGCCCAAATTGAATTTTATTACCAcaaatttaag Coding sequence (CDS) from alignment at sc0000061:133310..135951+ >TCONS_00005829 ID=TCONS_00005829|Name=TCONS_00005829|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at sc0000061:133310..135951+ (Clytia hemisphaerica)
ATGAGAGCAAATCCTACCACCGTGTCAAGAATGCGTACTAAATGCAAATG
TGGGTACAGTTTTTGCCTGCTACTCCTTTTAGCTTTATATTCAACGTTAA
TCCAGTTACCAAATTTCCATGAAATATTTTCCCGTAAACACGGCAACATC
ACACACGTCATCGGAACAACTTTGCACAAATCGAAAGAACTTCTCGAGAG
CAGGTATGaagaatttcaaagttgggGTAAAGAGCTCATAAACGGTGAAA
CAAATAGTCACGTGGCACGCTATGAGCCAATCAAATGTGGTGTTAAGAGT
AAACCACACCGCTCAATtttctatataagaacacatcGTGCCGCTTCGAC
AACCTTGAGAAATATGTTACTGATATATGGGAGAGAATATAATTTGACTA
TATGTATGGACGTACTGGACCTCCATCGGGCGAACTGGCCCTATGGAGTC
GATGTATCTCGACTGACGAAAACTAGTAATGAAAGATGCCAGCTGGTAGC
AGAGGAAATTATGTACTCAAGTAAATTAGttGACAAAATCATGGCGGAGA
GGATTTTCACTTTGACTTCTGTTCGTCAtccagtccaacatttcatttca
ttgttccGACAGATGAAAATACAAGAGGTTGTGCAACGCGTTACAAGTCG
CAAAGGGTTGACAGAGAACCAAGCTATGGAGATATTTCTTAAAGATTGGG
AAGATTTTCAAAGAGCATACGCAACAGATGAAAACATAGGGATTGGTGAA
AAGTTACATTTAGGAATGATCAGATCAAATTTACAATCGTTTAGCCTGGG
AATAACAGATGTGATGTCTTTAGAGGATGTAGTACACAGGCTAAATGAGA
TGAACCTTATAGTTGTTTTTGAACGATTTGATGAATCAATGGTCATTTTG
AGAGAAAAGCTATGCTGCTCTTTAGATGATGTAGCGTACCGAAAGCTACC
GAATCATGAAACATCAAGCACAGTCTACGTACCAGAGGAACTTCAAAGAC
TCATcataaatttcaataaaattgatgcTATTTTCTATCAACATGCAGTT
AAACGACTAGACGAAGAGATGTCAGCGTTTGACAATTTTGAACAACTTTT
GGGGATTTATCGAGCAGAACTAAAGAAGTTCGAAGCTAAATGCACGGACC
CGAATTTCCCTGCACAATTTAGGAACAAAATATGCCCACCTGTTGAAGGG
GGTCAGTTAGAGACATTTGTAAACGACGTGCGAAAGgaacaaaaaatgat
tttattagATAAATTGAGGCGCCGTTTTAGTAAGAAACATTTACATTCAT
agATGAGAGCAAATCCTACCACCGTGTCAAGAATGCGTACTAAATGCAAA
TGTGGGTACAGTTTTTGCCTGCTACTCCTTTTAGCTTTATATTCAACGTT
AATCCAGTTACCAAATTTCCATGAAATATTTTCCCGTAAACACGGCAACA
TCACACACGTCATCGGAACAACTTTGCACAAATCGAAAGAACTTCTCGAG
AGCAGGTATGaagaatttcaaagttgggGTAAAGAGCTCATAAACGGTGA
AACAAATAGTCACGTGGCACGCTATGAGCCAATCAAATGTGGTGTTAAGA
GTAAACCACACCGCTCAATtttctatataagaacacatcGTGCCGCTTCG
ACAACCTTGAGAAATATGTTACTGATATATGGGAGAGAATATAATTTGAC
TATATGTATGGACGTACTGGACCTCCATCGGGCGAACTGGCCCTATGGAG
TCGATGTATCTCGACTGACGAAAACTAGTAATGAAAGATGCCAGCTGGTA
GCAGAGGAAATTATGTACTCAAGTAAATTAGttGACAAAATCATGGCGGA
GAGGATTTTCACTTTGACTTCTGTTCGTCAtccagtccaacatttcattt
cattgttccGACAGATGAAAATACAAGAGGTTGTGCAACGCGTTACAAGT
CGCAAAGGGTTGACAGAGAACCAAGCTATGGAGATATTTCTTAAAGATTG
GGAAGATTTTCAAAGAGCATACGCAACAGATGAAAACATAGGGATTGGTG
AAAAGTTACATTTAGGAATGATCAGATCAAATTTACAATCGTTTAGCCTG
GGAATAACAGATGTGATGTCTTTAGAGGATGTAGTACACAGGCTAAATGA
GATGAACCTTATAGTTGTTTTTGAACGATTTGATGAATCAATGGTCATTT
TGAGAGAAAAGCTATGCTGCTCTTTAGATGATGTAGCGTACCGAAAGCTA
CCGAATCATGAAACATCAAGCACAGTCTACGTACCAGAGGAACTTCAAAG
ACTCATcataaatttcaataaaattgatgcTATTTTCTATCAACATGCAG
TTAAACGACTAGACGAAGAGATGTCAGCGTTTGACAATTTTGAACAACTT
TTGGGGATTTATCGAGCAGAACTAAAGAAGTTCGAAGCTAAATGCACGGA
CCCGAATTTCCCTGCACAATTTAGGAACAAAATATGCCCACCTGTTGAAG
GGGGTCAGTTAGAGACATTTGTAAACGACGTGCGAAAGgaacaaaaaatg
attttattagATAAATTGAGGCGCCGTTTTAGTAAGAAACATTTACATTC
ATag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005829-exon-sc0000061-1491911889:133310..134152 | TCONS_00005829-exon-sc0000061-1491911889:133310..134152 | Clytia hemisphaerica | exon |
| TCONS_00005829-exon-sc0000061-1510915933:133310..134152 | TCONS_00005829-exon-sc0000061-1510915933:133310..134152 | Clytia hemisphaerica | exon |
| TCONS_00005829-exon-sc0000061-1575043694:133310..134152 | TCONS_00005829-exon-sc0000061-1575043694:133310..134152 | Clytia hemisphaerica | exon |
| TCONS_00005829-exon-sc0000061-1491911889:134843..135951 | TCONS_00005829-exon-sc0000061-1491911889:134843..135951 | Clytia hemisphaerica | exon |
| TCONS_00005829-exon-sc0000061-1510915933:134843..135951 | TCONS_00005829-exon-sc0000061-1510915933:134843..135951 | Clytia hemisphaerica | exon |
| TCONS_00005829-exon-sc0000061-1575043694:134843..135951 | TCONS_00005829-exon-sc0000061-1575043694:134843..135951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:133310..135951 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009729 | Gal-3-0_sulfotransfrase |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009247 | glycolipid biosynthetic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005794 | Golgi apparatus |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0001733 | galactosylceramide sulfotransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009247 |
glycolipid biosynthetic process |
| cellular_component |
GO:0005794 |
Golgi apparatus |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0001733 |
galactosylceramide sulfotransferase activity |
Blast
The following BLAST results are available for this feature:
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