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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005823 ID=TCONS_00005823|Name=TCONS_00005823|organism=Clytia hemisphaerica|type=transcript|length=919bp
GAGTTTTAATGAGAAGAGGAAAGAGtactttgaaaagaaaagatttgaaA
GCATACGAGTTGATCCAAAAACCTAGACCGAGTTTTACAACTCGAAGAAA
GTCACATGGCAAGTTACTCATTCTTACTTTCGGAGATGAAGAATTCACCA
AAGTATTGAAAAAGGGACTGGAACtgaataatgacgtcatattttggAAC
GAGCCAATCAAATTGGTTGAACGATTAAGCGCAAAATGGCGCGGTAACGA
TTTAATGGTTTTCGATAAGGACCCTTTTGAGAATTTCGAGATACCAGAGA
GCAAAGATACTTTTTATAACAGTTCTATTGAATTCATTCATGAAATCTTT
ACGTGTAACTTTTCACCAAAAGTTAATACGTTGATCAGTAAAGCATCAGA
AAAATGCCCCGAAATGCTGGCAGAAATCGTTATACTTCGTTCTGTTGTGA
ATTGCACTATTGTTAACCATTTTCGTTGGGCTTGCATTTCGATCCAAGAA
AAACCGCATCAAAAACTAAATCAAATTTGCCGTGACCGAAAATACAATGT
CGTTATTCGCGAAAATGAAGAACGAATGGTCATCGTTCAAACCCTACAAA
AACAACTCTCTGACCGACATATGAGTGATTTTAAAGTATTACATTTAGTA
CGTGACCCGAGGGCCGTGATGTACGCTCTTTCAATGCAAGGTCGAATAGA
GAGAAACCCTTATTTCGAAAATGTTCGACAGAAAGTTTCATTTGCTTGTA
AACAGTTACGAGAAAATTTGTTGTTCGGAAAAAATATGAGAGACGGTTAC
GAACTGTATCGATACGAAGACTTTACGAGTGAATCCGAGATTTCTAGTCT
CGTAAAAACAGGCTTCGGCGTATCAAACAATTTGGGTAAAGTTCAAATCA
AACATGACCAATGGAGGGC Run BLAST on NCBI protein sequence of TCONS_00005823-protein >TCONS_00005823-protein ID=TCONS_00005823-protein|Name=TCONS_00005823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
VLMRRGKSTLKRKDLKAYELIQKPRPSFTTRRKSHGKLLILTFGDEEFTK
VLKKGLELNNDVIFWNEPIKLVERLSAKWRGNDLMVFDKDPFENFEIPES
KDTFYNSSIEFIHEIFTCNFSPKVNTLISKASEKCPEMLAEIVILRSVVN
CTIVNHFRWACISIQEKPHQKLNQICRDRKYNVVIRENEERMVIVQTLQK
QLSDRHMSDFKVLHLVRDPRAVMYALSMQGRIERNPYFENVRQKVSFACK
QLRENLLFGKNMRDGYELYRYEDFTSESEISSLVKTGFGVSNNLGKVQIK
HDQWR Run BLAST on NCBI transcript from alignment at sc0000059:762677..763595 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005823 ID=TCONS_00005823|Name=TCONS_00005823|organism=Clytia hemisphaerica|type=transcript|length=919bp|location=Sequence derived from alignment at sc0000059:762677..763595 (Clytia hemisphaerica)
GCCCTCCATTGGTCATGTTTGATTTGAACTTTACCCAAATTGTTTGATAC
GCCGAAGCCTGTTTTTACGAGACTAGAAATCTCGGATTCACTCGTAAAGT
CTTCGTATCGATACAGTTCGTAACCGTCTCTCATATTTTTTCCGAACAAC
AAATTTTCTCGTAACTGTTTACAAGCAAATGAAACTTTCTGTCGAACATT
TTCGAAATAAGGGTTTCTCTCTATTCGACCTTGCATTGAAAGAGCGTACA
TCACGGCCCTCGGGTCACGTACTAAATGTAATACTTTAAAATCACTCATA
TGTCGGTCAGAGAGTTGTTTTTGTAGGGTTTGAACGATGACCATTCGTTC
TTCATTTTCGCGAATAACGACATTGTATTTTCGGTCACGGCAAATTTGAT
TTAGTTTTTGATGCGGTTTTTCTTGGATCGAAATGCAAGCCCAACGAAAA
TGGTTAACAATAGTGCAATTCACAACAGAACGAAGTATAACGATTTCTGC
CAGCATTTCGGGGCATTTTTCTGATGCTTTACTGATCAACGTATTAACTT
TTGGTGAAAAGTTACACGTAAAGATTTCATGAATGAATTCAATAGAACTG
TTATAAAAAGTATCTTTGCTCTCTGGTATCTCGAAATTCTCAAAAGGGTC
CTTATCGAAAACCATTAAATCGTTACCGCGCCATTTTGCGCTTAATCGTT
CAACCAATTTGATTGGCTCGTTccaaaatatgacgtcattattcaGTTCC
AGTCCCTTTTTCAATACTTTGGTGAATTCTTCATCTCCGAAAGTAAGAAT
GAGTAACTTGCCATGTGACTTTCTTCGAGTTGTAAAACTCGGTCTAGGTT
TTTGGATCAACTCGTATGCTttcaaatcttttcttttcaaagtaCTCTTT
CCTCTTCTCATTAAAACTC Coding sequence (CDS) from alignment at sc0000059:762677..763595 >TCONS_00005823 ID=TCONS_00005823|Name=TCONS_00005823|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at sc0000059:762677..763595 (Clytia hemisphaerica)
CCTCCATTGGTCATGTTTGATTTGAACTTTACCCAAATTGTTTGATACGC
CGAAGCCTGTTTTTACGAGACTAGAAATCTCGGATTCACTCGTAAAGTCT
TCGTATCGATACAGTTCGTAACCGTCTCTCATATTTTTTCCGAACAACAA
ATTTTCTCGTAACTGTTTACAAGCAAATGAAACTTTCTGTCGAACATTTT
CGAAATAAGGGTTTCTCTCTATTCGACCTTGCATTGAAAGAGCGTACATC
ACGGCCCTCGGGTCACGTACTAAATGTAATACTTTAAAATCACTCATATG
TCGGTCAGAGAGTTGTTTTTGTAGGGTTTGAACGATGACCATTCGTTCTT
CATTTTCGCGAATAACGACATTGTATTTTCGGTCACGGCAAATTTGATTT
AGTTTTTGATGCGGTTTTTCTTGGATCGAAATGCAAGCCCAACGAAAATG
GTTAACAATAGTGCAATTCACAACAGAACGAAGTATAACGATTTCTGCCA
GCATTTCGGGGCATTTTTCTGATGCTTTACTGATCAACGTATTAACTTTT
GGTGAAAAGTTACACGTAAAGATTTCATGAATGAATTCAATAGAACTGTT
ATAAAAAGTATCTTTGCTCTCTGGTATCTCGAAATTCTCAAAAGGGTCCT
TATCGAAAACCATTAAATCGTTACCGCGCCATTTTGCGCTTAATCGTTCA
ACCAATTTGATTGGCTCGTTccaaaatatgacgtcattattcaGTTCCAG
TCCCTTTTTCAATACTTTGGTGAATTCTTCATCTCCGAAAGTAAGAATGA
GTAACTTGCCATGTGACTTTCTTCGAGTTGTAAAACTCGGTCTAGGTTTT
TGGATCAACTCGTATGCTttcaaatcttttcttttcaaagtaCTCTTTCC
TCTTCTCATTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005823-exon-sc0000059-1491911889:762677..763595 | TCONS_00005823-exon-sc0000059-1491911889:762677..763595 | Clytia hemisphaerica | exon |
| TCONS_00005823-exon-sc0000059-1510915933:762677..763595 | TCONS_00005823-exon-sc0000059-1510915933:762677..763595 | Clytia hemisphaerica | exon |
| TCONS_00005823-exon-sc0000059-1575043694:762677..763595 | TCONS_00005823-exon-sc0000059-1575043694:762677..763595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:762677..763595 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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