TCONS_00005822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005822
Unique NameTCONS_00005822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005822 ID=TCONS_00005822|Name=TCONS_00005822|organism=Clytia hemisphaerica|type=transcript|length=557bp
TGTTTCGTGAAGAGATTCGAAGTAAAGctaaaagttttcgaaaaatcaCA
TTTAGCGAGGATGTCGTAAGTGCAGGAGACCATTTGGCAAATTCAATGCA
ACATATTCAATGAAAGATtataaaatacactttttcgaccgtagccgcca
attgccgcgcggacaTTTTGCTGCTGGACAGtctgctttatcccactaaa
accgtcccagtccttttttcgcacctataaaCAATATGTCAAAATGTCTC
AAAAAAGAATTGGAACGAGTTTAGAGGGATAAtcaaataattaagtggca
cgcacCTGACCACGTGACTACGGTCGATAAGTTGTATTTgaagttttatt
tcatttatgtACGCGAAGAAGTAAATTATTTGTAATGTAAATATTGTTAA
AACTGCTATGATAGATATGATGCATGTTTCTATGATCGAAAAATATAATT
AGATtttgatccaatatttcaaagTTTGTGTTCCCCACTTTATGTTAACC
CGTAAACGGGGGAGTTGATACACTCGATTTGAAGGCAAATAGTTGGGTGG
ACCGCCG
Run BLAST on NCBI

transcript from alignment at sc0000059:762043..762599

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005822 ID=TCONS_00005822|Name=TCONS_00005822|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000059:762043..762599 (Clytia hemisphaerica)
CGGCGGTCCACCCAACTATTTGCCTTCAAATCGAGTGTATCAACTCCCCC
GTTTACGGGTTAACATAAAGTGGGGAACACAAActttgaaatattggatc
aaaATCTAATTATATTTTTCGATCATAGAAACATGCATCATATCTATCAT
AGCAGTTTTAACAATATTTACATTACAAATAATTTACTTCTTCGCGTaca
taaatgaaataaaacttcAAATACAACTTATCGACCGTAGTCACGTGGTC
AGgtgcgtgccacttaattatttgaTTATCCCTCTAAACTCGTTCCAATT
CTTTTTTGAGACATTTTGACATATTGtttataggtgcgaaaaaaggactg
ggacggttttagtgggataaagcagaCTGTCCAGCAGCAAAAtgtccgcg
cggcaattggcggctacggtcgaaaaagtgtattttataATCTTTCATTG
AATATGTTGCATTGAATTTGCCAAATGGTCTCCTGCACTTACGACATCCT
CGCTAAATGtgatttttcgaaaacttttagCTTTACTTCGAATCTCTTCA
CGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003320XLOC_003320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005822-exon-sc0000059-1491911889:762043..762599TCONS_00005822-exon-sc0000059-1491911889:762043..762599Clytia hemisphaericaexon
TCONS_00005822-exon-sc0000059-1510915933:762043..762599TCONS_00005822-exon-sc0000059-1510915933:762043..762599Clytia hemisphaericaexon
TCONS_00005822-exon-sc0000059-1575043694:762043..762599TCONS_00005822-exon-sc0000059-1575043694:762043..762599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:762043..762599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102104	0.210403	0.245229	0.688071	0	0	0.789667	0.123038	1.81084	1.28704	1.2476	0.54735	2.51351	2.3282	0.0580908	0.248901	0.153312	0.0799092	2.94028	3.43223	0.506613	0	0	0.107076	0.334837	0.0984699	0.433023	0.609223	0.574168	0.11668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top