TCONS_00005821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005821
Unique NameTCONS_00005821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005821 ID=TCONS_00005821|Name=TCONS_00005821|organism=Clytia hemisphaerica|type=transcript|length=285bp
TTTTAAAGAGATTCAAAACCTTCAATGAAGCAGTGGCTTACATCAGATTA
GAGAACGCGATCAAGCCGAATTACAATGTGAACTCCGCCAAACTGTTCAA
GAAGCTGAACGAAAAGATCGACAAATTAGCAGCTGGCGCGTGTACTGTCC
AATCTTCCGGTGCAACACCAAGACGAGTGTCATTGAATGAGTACGCCGGT
GAAAGAGATCTCGATGAACAAGTATCCGAGGTGATCGAACAAAAGTTACG
AATGATAATGCCTCAAACAATCAATACGCTTGGCC
Run BLAST on NCBI

transcript from alignment at sc0000059:742803..743087

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005821 ID=TCONS_00005821|Name=TCONS_00005821|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at sc0000059:742803..743087 (Clytia hemisphaerica)
GGCCAAGCGTATTGATTGTTTGAGGCATTATCATTCGTAACTTTTGTTCG
ATCACCTCGGATACTTGTTCATCGAGATCTCTTTCACCGGCGTACTCATT
CAATGACACTCGTCTTGGTGTTGCACCGGAAGATTGGACAGTACACGCGC
CAGCTGCTAATTTGTCGATCTTTTCGTTCAGCTTCTTGAACAGTTTGGCG
GAGTTCACATTGTAATTCGGCTTGATCGCGTTCTCTAATCTGATGTAAGC
CACTGCTTCATTGAAGGTTTTGAATCTCTTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003319XLOC_003319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005821-exon-sc0000059-1491911889:742803..743087TCONS_00005821-exon-sc0000059-1491911889:742803..743087Clytia hemisphaericaexon
TCONS_00005821-exon-sc0000059-1510915933:742803..743087TCONS_00005821-exon-sc0000059-1510915933:742803..743087Clytia hemisphaericaexon
TCONS_00005821-exon-sc0000059-1575043694:742803..743087TCONS_00005821-exon-sc0000059-1575043694:742803..743087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:742803..743087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.33202	0.525045	0	0	0	0.434287	0	0.0211258	0	0.755659	0	2.31615	2.11234	1.24634	2.50543	1.57541	1.78401	1.80887	5.04017	3.17447	3.25957	0.815822	0	0.477838	0.405728	1.02985	2.44984	16.2013	13.1372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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