TCONS_00005820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005820
Unique NameTCONS_00005820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005820 ID=TCONS_00005820|Name=TCONS_00005820|organism=Clytia hemisphaerica|type=transcript|length=597bp
cttaggcttaaaactaaaaaaagttatgaacatccgtttgcttcaaaaaa
gtttggatgttcttataaaaaaatgtgtatttgaTTGTGAACAAAAAGGT
ACACATACATGTTACTCTGggaaaaaatttatgttttgaaaGTCAGTTAG
TTTGAAGCTTCCTTTAACTAATTCTAAGTGAAGTTTATTATAGAATTGTC
GTCTTTGTGCAGTTGGATCTAAAACATTCCCTTCTCCGTCAATgagtttt
tctattttgtaaccGTTTTTTAACTCTCGCTTGATCCAATTCTTCGTGAC
ACTTATTCGGTAAAACTTGTTAACAGTGCCATCCGTGGggtattcttttg
ttttaccaGTGTCTTGAAAGTGGAGCTTGATAAAAGTGAATCTATTCACT
GGTAATTCGTCGTTTCCCTGGTTGTTAGTATAATCGAGCAGACTTCCGTC
GTCCTTCAACATCCCATTGGAATAAAAAGGGATATAAAGATTTTCTGCTG
GAACATTGGTTCGATTCTGAATTAGAATTTTGATCTCCTTAATTGTTATA
GAACTTTTAATaaccaatttcaaaattttctgttcCCATTTAAGTCG
Run BLAST on NCBI

protein sequence of TCONS_00005820-protein

>TCONS_00005820-protein ID=TCONS_00005820-protein|Name=TCONS_00005820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
RLKWEQKILKLVIKSSITIKEIKILIQNRTNVPAENLYIPFYSNGMLKDD
GSLLDYTNNQGNDELPVNRFTFIKLHFQDTGKTKEYPTDGTVNKFYRISV
TKNWIKRELKNGYKIEKLIDGEGNVLDPTAQRRQFYNKLHLELVKGSFKL
TDFQNINFFPE
Run BLAST on NCBI

transcript from alignment at sc0000059:720023..720619

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005820 ID=TCONS_00005820|Name=TCONS_00005820|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at sc0000059:720023..720619 (Clytia hemisphaerica)
CGACTTAAATGGgaacagaaaattttgaaattggttATTAAAAGTTCTAT
AACAATTAAGGAGATCAAAATTCTAATTCAGAATCGAACCAATGTTCCAG
CAGAAAATCTTTATATCCCTTTTTATTCCAATGGGATGTTGAAGGACGAC
GGAAGTCTGCTCGATTATACTAACAACCAGGGAAACGACGAATTACCAGT
GAATAGATTCACTTTTATCAAGCTCCACTTTCAAGACACtggtaaaacaa
aagaataccCCACGGATGGCACTGTTAACAAGTTTTACCGAATAAGTGTC
ACGAAGAATTGGATCAAGCGAGAGTTAAAAAACggttacaaaatagaaaa
actcATTGACGGAGAAGGGAATGTTTTAGATCCAACTGCACAAAGACGAC
AATTCTATAATAAACTTCACTTAGAATTAGTTAAAGGAAGCTTCAAACTA
ACTGACtttcaaaacataaattttttccCAGAGTAACATGTATGTGTACC
TTTTTGTTCACAAtcaaatacacatttttttataagaacatccaaacttt
tttgaagcaaacggatgttcataactttttttagttttaagcctaag

Coding sequence (CDS) from alignment at sc0000059:720023..720619

>TCONS_00005820 ID=TCONS_00005820|Name=TCONS_00005820|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000059:720023..720619 (Clytia hemisphaerica)
CGACTTAAATGGgaacagaaaattttgaaattggttATTAAAAGTTCTAT
AACAATTAAGGAGATCAAAATTCTAATTCAGAATCGAACCAATGTTCCAG
CAGAAAATCTTTATATCCCTTTTTATTCCAATGGGATGTTGAAGGACGAC
GGAAGTCTGCTCGATTATACTAACAACCAGGGAAACGACGAATTACCAGT
GAATAGATTCACTTTTATCAAGCTCCACTTTCAAGACACtggtaaaacaa
aagaataccCCACGGATGGCACTGTTAACAAGTTTTACCGAATAAGTGTC
ACGAAGAATTGGATCAAGCGAGAGTTAAAAAACggttacaaaatagaaaa
actcATTGACGGAGAAGGGAATGTTTTAGATCCAACTGCACAAAGACGAC
AATTCTATAATAAACTTCACTTAGAATTAGTTAAAGGAAGCTTCAAACTA
ACTGACtttcaaaacataaattttttccCAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003318XLOC_003318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005820-exon-sc0000059-1491911889:720023..720619TCONS_00005820-exon-sc0000059-1491911889:720023..720619Clytia hemisphaericaexon
TCONS_00005820-exon-sc0000059-1510915933:720023..720619TCONS_00005820-exon-sc0000059-1510915933:720023..720619Clytia hemisphaericaexon
TCONS_00005820-exon-sc0000059-1575043694:720023..720619TCONS_00005820-exon-sc0000059-1575043694:720023..720619Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005820-proteinTCONS_00005820-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:720023..720619 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0914375	0.178332	0.10353	0	0	0	0.235115	0.110056	0	0	0	0.121794	0.425685	0.31577	0.519212	0.724353	0.686418	0.492489	1.8468	2.84796	0.442035	0.388096	0	0.667206	0.0981724	0	0	0	0	0.620404
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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