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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005810 ID=TCONS_00005810|Name=TCONS_00005810|organism=Clytia hemisphaerica|type=transcript|length=1294bp
TGCTTATTTTGGTGAAGGTCTCTCAGAAAACAACagttgaaaacaacaaa
aattgtGTTGAAAAGATAGTCAAACCTTTGAGTCGAAATGAAACTGAGTG
GAGTTTTATCGCAAATGAGATTCAATTTTCAGAAACATTTCATACAAAAT
CCTGGTGTGAAGACATATACAATGGAAAGCCTTGGACACAAAGGTGATAT
ACGTTTCGGATATTCAGAACCGTTTCAATTACTTAACAATGAGGCTACAA
CTTATATCCGGAAGTTAACAATGAATGACGAATTTGTCCGAAAAACCAAA
TtcgtgacgtcattttcaccgTTTGTATTACGTAATTGTGCAATGCATGA
CAAGTTTCTTAACGATATATACACGTCAAAAGAAAGTGAACAATATTTCT
CTGACATTGTTGGTGAAGATATGAAATGGCTTTCGAATTCTTGGGACGCT
TCCCACATGAATGTCCAAGAAAAAGTTGGTCTGGATACCAAAATATTCGA
CTGGCATATGGATAGTCAACCACTAACCTTGATTATTAATGTCTCGGATA
TGCCTGATGAAGTTATCGGAGGGAGCACCATATTGAAACGACATGATGAT
GGTACCGAGATTGAGCTACGGCAACCGGCACCTGGTTACGCCACCATTTT
CAGAGGCTCCGGCGTCTTTCATCGTGGGTCCGCTGCTAATTACCGTAGAA
TTATTTACGTTAAAACGATGGAATTCAAAGATGTCTCCATCTTGGATAAA
ACAGATGCTCTATTCAGTACGCAGTATTCCGAACCAGTTGACATGCTTTC
ACAACATTTACAAAATAAACTGAGCAGACTTCAAAAACAAGTGGAATTCG
TACGCGACCATCCAGAGCGAGCGGACGAAATGGTGGAAATCGTACGACAA
GAGATGGAAAATAACCAAGTTTTCGCTAAATATGCGTTCCAGGTTCTTGC
TGGTCAAGAAACTGTGGATACCTTGATTGAAAAGAAACTCATTCAAAACG
TGTATTAAATCATAGGCTACAAAGTATAACATAAGGTTTCACAGTTCCaa
aaacccagctggcacacaacgttgtttcaacgttcaaatATTGTTGTATG
GACGTTAAGAACGTTATtcgaacgttgaaacaacgttgtgtgccagctgg
ggtccCATAGTATATTTATGATATAGAAAACTTAAAGTGTAAAAGCAGCA
AATTGATAAACAGAAAATAAAGTGACTGCTTTATATTCAAATCTTCGTCA
CGTGACTTCATCAGCATGAAGGAATAATTTAAACTGTAATGCTA Run BLAST on NCBI protein sequence of TCONS_00005810-protein >TCONS_00005810-protein ID=TCONS_00005810-protein|Name=TCONS_00005810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MKLSGVLSQMRFNFQKHFIQNPGVKTYTMESLGHKGDIRFGYSEPFQLLN
NEATTYIRKLTMNDEFVRKTKFVTSFSPFVLRNCAMHDKFLNDIYTSKES
EQYFSDIVGEDMKWLSNSWDASHMNVQEKVGLDTKIFDWHMDSQPLTLII
NVSDMPDEVIGGSTILKRHDDGTEIELRQPAPGYATIFRGSGVFHRGSAA
NYRRIIYVKTMEFKDVSILDKTDALFSTQYSEPVDMLSQHLQNKLSRLQK
QVEFVRDHPERADEMVEIVRQEMENNQVFAKYAFQVLAGQETVDTLIEKK
LIQNVY Run BLAST on NCBI transcript from alignment at sc0000059:604572..605865 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005810 ID=TCONS_00005810|Name=TCONS_00005810|organism=Clytia hemisphaerica|type=transcript|length=1294bp|location=Sequence derived from alignment at sc0000059:604572..605865 (Clytia hemisphaerica)
TAGCATTACAGTTTAAATTATTCCTTCATGCTGATGAAGTCACGTGACGA
AGATTTGAATATAAAGCAGTCACTTTATTTTCTGTTTATCAATTTGCTGC
TTTTACACTTTAAGTTTTCTATATCATAAATATACTATGggaccccagct
ggcacacaacgttgtttcaacgttcgaATAACGTTCTTAACGTCCATACA
ACAATatttgaacgttgaaacaacgttgtgtgccagctgggtttttGGAA
CTGTGAAACCTTATGTTATACTTTGTAGCCTATGATTTAATACACGTTTT
GAATGAGTTTCTTTTCAATCAAGGTATCCACAGTTTCTTGACCAGCAAGA
ACCTGGAACGCATATTTAGCGAAAACTTGGTTATTTTCCATCTCTTGTCG
TACGATTTCCACCATTTCGTCCGCTCGCTCTGGATGGTCGCGTACGAATT
CCACTTGTTTTTGAAGTCTGCTCAGTTTATTTTGTAAATGTTGTGAAAGC
ATGTCAACTGGTTCGGAATACTGCGTACTGAATAGAGCATCTGTTTTATC
CAAGATGGAGACATCTTTGAATTCCATCGTTTTAACGTAAATAATTCTAC
GGTAATTAGCAGCGGACCCACGATGAAAGACGCCGGAGCCTCTGAAAATG
GTGGCGTAACCAGGTGCCGGTTGCCGTAGCTCAATCTCGGTACCATCATC
ATGTCGTTTCAATATGGTGCTCCCTCCGATAACTTCATCAGGCATATCCG
AGACATTAATAATCAAGGTTAGTGGTTGACTATCCATATGCCAGTCGAAT
ATTTTGGTATCCAGACCAACTTTTTCTTGGACATTCATGTGGGAAGCGTC
CCAAGAATTCGAAAGCCATTTCATATCTTCACCAACAATGTCAGAGAAAT
ATTGTTCACTTTCTTTTGACGTGTATATATCGTTAAGAAACTTGTCATGC
ATTGCACAATTACGTAATACAAAcggtgaaaatgacgtcacgaATTTGGT
TTTTCGGACAAATTCGTCATTCATTGTTAACTTCCGGATATAAGTTGTAG
CCTCATTGTTAAGTAATTGAAACGGTTCTGAATATCCGAAACGTATATCA
CCTTTGTGTCCAAGGCTTTCCATTGTATATGTCTTCACACCAGGATTTTG
TATGAAATGTTTCTGAAAATTGAATCTCATTTGCGATAAAACTCCACTCA
GTTTCATTTCGACTCAAAGGTTTGACTATCTTTTCAACacaatttttgtt
gttttcaactGTTGTTTTCTGAGAGACCTTCACCAAAATAAGCA Coding sequence (CDS) from alignment at sc0000059:604572..605865 >TCONS_00005810 ID=TCONS_00005810|Name=TCONS_00005810|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0000059:604572..605865 (Clytia hemisphaerica)
TTAATACACGTTTTGAATGAGTTTCTTTTCAATCAAGGTATCCACAGTTT
CTTGACCAGCAAGAACCTGGAACGCATATTTAGCGAAAACTTGGTTATTT
TCCATCTCTTGTCGTACGATTTCCACCATTTCGTCCGCTCGCTCTGGATG
GTCGCGTACGAATTCCACTTGTTTTTGAAGTCTGCTCAGTTTATTTTGTA
AATGTTGTGAAAGCATGTCAACTGGTTCGGAATACTGCGTACTGAATAGA
GCATCTGTTTTATCCAAGATGGAGACATCTTTGAATTCCATCGTTTTAAC
GTAAATAATTCTACGGTAATTAGCAGCGGACCCACGATGAAAGACGCCGG
AGCCTCTGAAAATGGTGGCGTAACCAGGTGCCGGTTGCCGTAGCTCAATC
TCGGTACCATCATCATGTCGTTTCAATATGGTGCTCCCTCCGATAACTTC
ATCAGGCATATCCGAGACATTAATAATCAAGGTTAGTGGTTGACTATCCA
TATGCCAGTCGAATATTTTGGTATCCAGACCAACTTTTTCTTGGACATTC
ATGTGGGAAGCGTCCCAAGAATTCGAAAGCCATTTCATATCTTCACCAAC
AATGTCAGAGAAATATTGTTCACTTTCTTTTGACGTGTATATATCGTTAA
GAAACTTGTCATGCATTGCACAATTACGTAATACAAAcggtgaaaatgac
gtcacgaATTTGGTTTTTCGGACAAATTCGTCATTCATTGTTAACTTCCG
GATATAAGTTGTAGCCTCATTGTTAAGTAATTGAAACGGTTCTGAATATC
CGAAACGTATATCACCTTTGTGTCCAAGGCTTTCCATTGTATATGTCTTC
ACACCAGGATTTTGTATGAAATGTTTCTGAAAATTGAATCTCATTTGCGA
TAAAACTCCACTCAGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005810-exon-sc0000059-1491911889:604572..605865 | TCONS_00005810-exon-sc0000059-1491911889:604572..605865 | Clytia hemisphaerica | exon |
| TCONS_00005810-exon-sc0000059-1510915933:604572..605865 | TCONS_00005810-exon-sc0000059-1510915933:604572..605865 | Clytia hemisphaerica | exon |
| TCONS_00005810-exon-sc0000059-1575043694:604572..605865 | TCONS_00005810-exon-sc0000059-1575043694:604572..605865 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:604572..605865 . |
Blast
The following BLAST results are available for this feature:
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