TCONS_00005806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005806
Unique NameTCONS_00005806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005806 ID=TCONS_00005806|Name=TCONS_00005806|organism=Clytia hemisphaerica|type=transcript|length=455bp
CACTTAAATAGACCAATGTTTGTTTGACAATGTTGTTCCCCATCACTTGT
TCATTATAAAGACGcttcaagaaatttttcaaatcgttGTAAGGAATACC
CTTTGAAGCAAAGCTGAGTTTTGTTTGAGGGAAATTCCATTCGAATTGAT
TGACATTGAAGCTTGGCCGCCATTGGACAACAAAACCATCACTCGGAAGG
TATACATTGATGGTGAAGCAATCTTCGTTCCGTGTCAAAGGCTCTAAACG
ATGCAAGAAGTCatccaaaaatttaatttcaatccAATGTGCAATAATGG
TTATATTATTTGTTTGTGGGCAAGCCAACATCTCCAATTCTTTAAACATG
AACCCATCCGTATTACAATGGAATATCAATATGAAGAGAAAAGAAGTCAC
CAAAAAGGAGATACGGACCATTTTGTAAATACTCGAAAAGAATTTCTGTT
gttgc
Run BLAST on NCBI

protein sequence of TCONS_00005806-protein

>TCONS_00005806-protein ID=TCONS_00005806-protein|Name=TCONS_00005806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
QQQKFFSSIYKMVRISFLVTSFLFILIFHCNTDGFMFKELEMLACPQTNN
ITIIAHWIEIKFLDDFLHRLEPLTRNEDCFTINVYLPSDGFVVQWRPSFN
VNQFEWNFPQTKLSFASKGIPYNDLKNFLKRLYNEQVMGNNIVKQTLVYL
S
Run BLAST on NCBI

transcript from alignment at sc0000059:476017..476471

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005806 ID=TCONS_00005806|Name=TCONS_00005806|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at sc0000059:476017..476471 (Clytia hemisphaerica)
gcaacAACAGAAATTCTTTTCGAGTATTTACAAAATGGTCCGTATCTCCT
TTTTGGTGACTTCTTTTCTCTTCATATTGATATTCCATTGTAATACGGAT
GGGTTCATGTTTAAAGAATTGGAGATGTTGGCTTGCCCACAAACAAATAA
TATAACCATTATTGCACATTggattgaaattaaatttttggatGACTTCT
TGCATCGTTTAGAGCCTTTGACACGGAACGAAGATTGCTTCACCATCAAT
GTATACCTTCCGAGTGATGGTTTTGTTGTCCAATGGCGGCCAAGCTTCAA
TGTCAATCAATTCGAATGGAATTTCCCTCAAACAAAACTCAGCTTTGCTT
CAAAGGGTATTCCTTACaacgatttgaaaaatttcttgaagCGTCTTTAT
AATGAACAAGTGATGGGGAACAACATTGTCAAACAAACATTGGTCTATTT
AAGTG

Coding sequence (CDS) from alignment at sc0000059:476017..476471

>TCONS_00005806 ID=TCONS_00005806|Name=TCONS_00005806|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000059:476017..476471 (Clytia hemisphaerica)
caacAACAGAAATTCTTTTCGAGTATTTACAAAATGGTCCGTATCTCCTT
TTTGGTGACTTCTTTTCTCTTCATATTGATATTCCATTGTAATACGGATG
GGTTCATGTTTAAAGAATTGGAGATGTTGGCTTGCCCACAAACAAATAAT
ATAACCATTATTGCACATTggattgaaattaaatttttggatGACTTCTT
GCATCGTTTAGAGCCTTTGACACGGAACGAAGATTGCTTCACCATCAATG
TATACCTTCCGAGTGATGGTTTTGTTGTCCAATGGCGGCCAAGCTTCAAT
GTCAATCAATTCGAATGGAATTTCCCTCAAACAAAACTCAGCTTTGCTTC
AAAGGGTATTCCTTACaacgatttgaaaaatttcttgaagCGTCTTTATA
ATGAACAAGTGATGGGGAACAACATTGTCAAACAAACATTGGTCTATTTA
AGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003304XLOC_003304Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005806-proteinTCONS_00005806-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005806-exon-sc0000059-1491911889:476017..476471TCONS_00005806-exon-sc0000059-1491911889:476017..476471Clytia hemisphaericaexon
TCONS_00005806-exon-sc0000059-1510915933:476017..476471TCONS_00005806-exon-sc0000059-1510915933:476017..476471Clytia hemisphaericaexon
TCONS_00005806-exon-sc0000059-1575043694:476017..476471TCONS_00005806-exon-sc0000059-1575043694:476017..476471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:476017..476471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54058	2.74152	3.70255	3.50625	0.777947	0.153686	1.66874	1.87877	1.56063	1.01607	1.02279	2.61559	15.788	11.0496	4.53177	7.0021	2.13495	2.05246	5.68924	3.21707	0.278877	0	2.72428	1.93311	0.619364	0.235739	0.197752	0	2.02213	1.92714
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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