TCONS_00005799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005799
Unique NameTCONS_00005799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005799 ID=TCONS_00005799|Name=TCONS_00005799|organism=Clytia hemisphaerica|type=transcript|length=244bp
cTCGAACAAACCAAAGTCGCTTTACTGAGTTACAACGCGTGTTCACACAG
GAACAAAGCAATTCTCGCTCTCTGAAGAATAATTTGGCCACAAAATGCTT
GTGCTAAAGACAAGACTTCACAATAGTTTCCAACCAATGGAAACCCCACG
GCAACACGTCTATTGCACGGAACAAACGACACTACGTCTAGTGTGCGGAC
AACGATACCACGTTAGTATACGGACTCAAAACTCAGCTCAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000059:228660..228903

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005799 ID=TCONS_00005799|Name=TCONS_00005799|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0000059:228660..228903 (Clytia hemisphaerica)
TTTTTGAGCTGAGTTTTGAGTCCGTATACTAACGTGGTATCGTTGTCCGC
ACACTAGACGTAGTGTCGTTTGTTCCGTGCAATAGACGTGTTGCCGTGGG
GTTTCCATTGGTTGGAAACTATTGTGAAGTCTTGTCTTTAGCACAAGCAT
TTTGTGGCCAAATTATTCTTCAGAGAGCGAGAATTGCTTTGTTCCTGTGT
GAACACGCGTTGTAACTCAGTAAAGCGACTTTGGTTTGTTCGAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003297XLOC_003297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005799-exon-sc0000059-1491911889:228660..228903TCONS_00005799-exon-sc0000059-1491911889:228660..228903Clytia hemisphaericaexon
TCONS_00005799-exon-sc0000059-1510915933:228660..228903TCONS_00005799-exon-sc0000059-1510915933:228660..228903Clytia hemisphaericaexon
TCONS_00005799-exon-sc0000059-1575043694:228660..228903TCONS_00005799-exon-sc0000059-1575043694:228660..228903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:228660..228903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.51973	3.17415	5.04096	1.79459	1.42157	1.47608	0	1.523	0.560973	0	0.198364	0.3856	0	1.94702	2.09818	5.11356	3.2621	3.34605	2.59756	2.41168	0	0	1.82761	2.82281	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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