TCONS_00005797 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005797
Unique NameTCONS_00005797
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005797 ID=TCONS_00005797|Name=TCONS_00005797|organism=Clytia hemisphaerica|type=transcript|length=234bp
TCCCTCCTACAACACCATTACCTTTGGGAACAAATCTTTCTCTAAGTTTT
GCATAACACATTGGAACAGCATGCAGCGATCTTACCCAAATATTACCCTG
AGCTCATCTGATTTCagttttgttaaatctcttgCCCTTACTCACTGTCT
TGGGAGATACTGAGCACACCCCTCCCCTACCAAGAAAGGTTagcaaactt
tcttttaatttatttttcattacataacaaaatt
Run BLAST on NCBI

transcript from alignment at sc0000059:117031..117264

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005797 ID=TCONS_00005797|Name=TCONS_00005797|organism=Clytia hemisphaerica|type=transcript|length=234bp|location=Sequence derived from alignment at sc0000059:117031..117264 (Clytia hemisphaerica)
aattttgttatgtaatgaaaaataaattaaaagaaagtttgctAACCTTT
CTTGGTAGGGGAGGGGTGTGCTCAGTATCTCCCAAGACAGTGAGTAAGGG
caagagatttaacaaaactGAAATCAGATGAGCTCAGGGTAATATTTGGG
TAAGATCGCTGCATGCTGTTCCAATGTGTTATGCAAAACTTAGAGAAAGA
TTTGTTCCCAAAGGTAATGGTGTTGTAGGAGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003295XLOC_003295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005797-exon-sc0000059-1491911889:117031..117264TCONS_00005797-exon-sc0000059-1491911889:117031..117264Clytia hemisphaericaexon
TCONS_00005797-exon-sc0000059-1510915933:117031..117264TCONS_00005797-exon-sc0000059-1510915933:117031..117264Clytia hemisphaericaexon
TCONS_00005797-exon-sc0000059-1575043694:117031..117264TCONS_00005797-exon-sc0000059-1575043694:117031..117264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:117031..117264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.22956	5.79609	15.8091	5.71518	10.5556	7.42436	4.42763	4.15332	4.20879	5.80388	2.00727	2.81437	3.953	0.875093	6.24945	5.25607	4.03149	3.0489	4.21222	2.20389	1.49797	7.5326	1.13583	0	5.31795	6.60135	3.7346	0	2.47877	1.12023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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