TCONS_00005796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005796
Unique NameTCONS_00005796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005796 ID=TCONS_00005796|Name=TCONS_00005796|organism=Clytia hemisphaerica|type=transcript|length=394bp
GAAATTAATCAGATCGCGAAAAAAAAGAGACATTTGCAGTCCAGTATTGA
CGAGTTGTTGAAAGATGCCGACGGTATGGCCCTACAAGCTCAGGATAATA
AATGTTTCAAAACTCTGGAAAGGTCAAACGATCTCAGAAAAGCAGCCGCA
TTGAAGAAAGCAGAAATTAACGAGTTTACTAAAATGGAAGAAACCCTAAT
CCTTCGTAGGGATTCAATTGTTTGAGTTGataatctaagttttttaaagt
tgaTCCAAACTTACTATGTTCGAAAagtatttttgatttgatttcttttg
atattttgtatattttcttTCGTTAGTTAtacttatatagtttgtttatt
tttttatattttcgtcaTGAAGTTGACAGCATTTACCTTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000059:94628..95021

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005796 ID=TCONS_00005796|Name=TCONS_00005796|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at sc0000059:94628..95021 (Clytia hemisphaerica)
AAAAAAAGGTAAATGCTGTCAACTTCAtgacgaaaatataaaaaaataaa
caaactatataagtaTAACTAACGAaagaaaatatacaaaatatcaaaag
aaatcaaatcaaaaatactTTTCGAACATAGTAAGTTTGGAtcaacttta
aaaaacttagattatCAACTCAAACAATTGAATCCCTACGAAGGATTAGG
GTTTCTTCCATTTTAGTAAACTCGTTAATTTCTGCTTTCTTCAATGCGGC
TGCTTTTCTGAGATCGTTTGACCTTTCCAGAGTTTTGAAACATTTATTAT
CCTGAGCTTGTAGGGCCATACCGTCGGCATCTTTCAACAACTCGTCAATA
CTGGACTGCAAATGTCTCTTTTTTTTCGCGATCTGATTAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003294XLOC_003294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005796-exon-sc0000059-1491911889:94628..95021TCONS_00005796-exon-sc0000059-1491911889:94628..95021Clytia hemisphaericaexon
TCONS_00005796-exon-sc0000059-1510915933:94628..95021TCONS_00005796-exon-sc0000059-1510915933:94628..95021Clytia hemisphaericaexon
TCONS_00005796-exon-sc0000059-1575043694:94628..95021TCONS_00005796-exon-sc0000059-1575043694:94628..95021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:94628..95021 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.767086	0.561023	0.434267	0.212431	0.775844	0.204361	0.246553	0	0.484807	0.20017	2.52577	0	0.510165	0	0.326683	0.701161	0.431887	0.737783	0.407715	0.639966	0.556247	0.813953	0.219882	0	0.205897	0	0.525914	0.561269	0.425703	0.867448
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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