TCONS_00005794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005794
Unique NameTCONS_00005794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005794 ID=TCONS_00005794|Name=TCONS_00005794|organism=Clytia hemisphaerica|type=transcript|length=286bp
TGTTGATCGTTACACCACTTTGGACAACCTAATTGATATGAGATTTATCT
TGATGACCGTACTTGGTTTTTCCGGATTTTTTAGAATAAGCGAAATGTTA
GAAATCCAGATCAAAGATATTTCTTTTTGTACAGCTGGAGTAGAAGTCTC
ACTACCAAGTTCAACAACTTAACTGATCAACTGAGAGAAGGAGAAACAGT
TTTCATTACCAAGACAAAGACACCTTACTGTCCTGTCTTCAAAAATACCT
TCATCTCACAAAGCTTAAGAAACCTAACGATTTTCT
Run BLAST on NCBI

transcript from alignment at sc0000059:17801..18086

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005794 ID=TCONS_00005794|Name=TCONS_00005794|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at sc0000059:17801..18086 (Clytia hemisphaerica)
AGAAAATCGTTAGGTTTCTTAAGCTTTGTGAGATGAAGGTATTTTTGAAG
ACAGGACAGTAAGGTGTCTTTGTCTTGGTAATGAAAACTGTTTCTCCTTC
TCTCAGTTGATCAGTTAAGTTGTTGAACTTGGTAGTGAGACTTCTACTCC
AGCTGTACAAAAAGAAATATCTTTGATCTGGATTTCTAACATTTCGCTTA
TTCTAAAAAATCCGGAAAAACCAAGTACGGTCATCAAGATAAATCTCATA
TCAATTAGGTTGTCCAAAGTGGTGTAACGATCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003292XLOC_003292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005794-exon-sc0000059-1491911889:17801..18086TCONS_00005794-exon-sc0000059-1491911889:17801..18086Clytia hemisphaericaexon
TCONS_00005794-exon-sc0000059-1510915933:17801..18086TCONS_00005794-exon-sc0000059-1510915933:17801..18086Clytia hemisphaericaexon
TCONS_00005794-exon-sc0000059-1575043694:17801..18086TCONS_00005794-exon-sc0000059-1575043694:17801..18086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:17801..18086 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5335	8.48543	3.62983	4.05854	0.61761	0	0	0	0	0	0	0.305011	0.304587	0	0	0	0	0	0	0	0	0	1.05022	0.954802	0	0.438841	0.62798	0.670197	0	0.517899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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