TCONS_00005793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005793
Unique NameTCONS_00005793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005793 ID=TCONS_00005793|Name=TCONS_00005793|organism=Clytia hemisphaerica|type=transcript|length=460bp
GTCGAGATGAACATTTTGCAAGAATCCTcgtcattggattggtcgttaac
tattcagACAAAGCTTTTATTACatgttttctaaagaacgcgtcatcttt
attgttttgaataactaattatgTAAGCATCATATAAAAACTTCAACCCA
ATTGCATTCATCATCAAGGACAGTCATTCTAACAGgttcaaaattttcca
accgATTAGGAATataaacaaagaattttttgcatccataccttttcttt
ttttcccctCGTGTTTTTCATTGCAAGATGTATccaataaacaaacaaat
tcaTGTCTTTCATTATTTCTACTTTCTATGTATTATTCTTAAGCTTTGAG
GAGAAATAGTGGAGAAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAA
CGAGTTTCTCAACGGTTTCACACGCAAAGCTGCTTGATGATCTTTGCGCA
GATTGGGACA
Run BLAST on NCBI

transcript from alignment at sc0000059:17237..17696

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005793 ID=TCONS_00005793|Name=TCONS_00005793|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000059:17237..17696 (Clytia hemisphaerica)
TGTCCCAATCTGCGCAAAGATCATCAAGCAGCTTTGCGTGTGAAACCGTT
GAGAAACTCGTTTCCCGTCTTTCTTCGATCGCCGAGAAACACGCTTCTCC
ACTATTTCTCCTCAAAGCTTAAGAATAATACATAGAAAGTAGAAATAATG
AAAGACAtgaatttgtttgtttattggATACATCTTGCAATGAAAAACAC
GaggggaaaaaaagaaaaggtatggatgcaaaaaattctttgtttatATT
CCTAATcggttggaaaattttgaacCTGTTAGAATGACTGTCCTTGATGA
TGAATGCAATTGGGTTGAAGTTTTTATATGATGCTTAcataattagttat
tcaaaacaataaagatgacgcgttctttagaaaacatGTAATAAAAGCTT
TGTctgaatagttaacgaccaatccaatgacgAGGATTCTTGCAAAATGT
TCATCTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003291XLOC_003291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005793-exon-sc0000059-1491911889:17237..17696TCONS_00005793-exon-sc0000059-1491911889:17237..17696Clytia hemisphaericaexon
TCONS_00005793-exon-sc0000059-1510915933:17237..17696TCONS_00005793-exon-sc0000059-1510915933:17237..17696Clytia hemisphaericaexon
TCONS_00005793-exon-sc0000059-1575043694:17237..17696TCONS_00005793-exon-sc0000059-1575043694:17237..17696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:17237..17696 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.1207	13.3149	6.74046	4.30277	2.98932	0.505702	2.77189	2.01296	35.0141	23.9402	19.2546	35.5012	4.03915	3.916	8.50731	5.31266	6.42098	8.58903	3.58436	2.51958	11.8199	11.175	11.8697	14.953	0	0.302926	0.954945	0.447127	11.4191	7.8421
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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