TCONS_00005788 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005788
Unique NameTCONS_00005788
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005788 ID=TCONS_00005788|Name=TCONS_00005788|organism=Clytia hemisphaerica|type=transcript|length=266bp
ttagatgagaaaaatagtgtaatcttagaaaaacttcctccatggtaatg
gaattgagattcagctAGTTATCATATTCTTTGTGAAAGGCTGTTAACAA
CACCGCCCCATAGAAATATTGGCCATCCAAGTACAGGTTGCCGATGCAAC
GACGATTGACTCAAGATTATCAGACATTTTTGCATGTTAACTGTCATGTT
TGTTCTCTATAGTTCCAGCAGAAAAGGTCTGCTAAAAGATGAGTGGGAAC
TGATGAAAACTTTACG
Run BLAST on NCBI

transcript from alignment at sc0000059:797500..798076-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005788 ID=TCONS_00005788|Name=TCONS_00005788|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at sc0000059:797500..798076- (Clytia hemisphaerica)
TTAGATGAGAAAAATAGTGTAATCTTAGAAAAACTTCCTCCATGGTAATG
GAATTGAGATTCAGTAAGTATACTTGATTTCCTCTGTGGTACTTTTAGCT
TTATCTAGGGAAACCATTGACTTTTGGGTTGGAAATTTCAAGTTTCAACA
ACAAAAACATCTCAGAAAACATAACTTTGAACTTTGACAGGTGATATTTA
TAAATTGTAACTACCTGAAGGGCCATGATTTTGACCAGTCAATGGATTGA
CTCAGAAGCTGCAAGGCTTTGGTTCTTTTACATTGAAAATATTATTTAGT
CCTTGGAATTTACATTTTGTATTTAACGGATTAGGGTAATTTCATATACA
GATTTCTATTTTATATATTTTCAGGCTAGTTATCATATTCTTTGTGAAAG
GCTGTTAACAACACCGCCCCATAGAAATATTGGCCATCCAAGTACAGGTT
GCCGATGCAACGACGATTGACTCAAGATTATCAGACATTTTTGCATGTTA
ACTGTCATGTTTGTTCTCTATAGTTCCAGCAGAAAAGGTCTGCTAAAAGA
TGAGTGGGAACTGATGAAAACTTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003286XLOC_003286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005788-exon-sc0000059-1575043694:798014..798076TCONS_00005788-exon-sc0000059-1575043694:798014..798076Clytia hemisphaericaexon
TCONS_00005788-exon-sc0000059-1575043694:797500..797702TCONS_00005788-exon-sc0000059-1575043694:797500..797702Clytia hemisphaericaexon
TCONS_00005788-exon-sc0000059-1510915933:798014..798076TCONS_00005788-exon-sc0000059-1510915933:798014..798076Clytia hemisphaericaexon
TCONS_00005788-exon-sc0000059-1510915933:797500..797702TCONS_00005788-exon-sc0000059-1510915933:797500..797702Clytia hemisphaericaexon
TCONS_00005788-exon-sc0000059-1491911889:798014..798076TCONS_00005788-exon-sc0000059-1491911889:798014..798076Clytia hemisphaericaexon
TCONS_00005788-exon-sc0000059-1491911889:797500..797702TCONS_00005788-exon-sc0000059-1491911889:797500..797702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:797500..798076 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00182	2.27094	0.679763	3.32521	10.5251	3.19888	5.40304	5.05826	6.5769	7.59146	3.05915	9.01987	4.63424	4.95681	3.58741	4.77955	3.45045	6.0074	4.16143	7.48751	1.16093	3.39757	4.57505	7.35953	4.51209	5.75276	7.83273	5.66464	5.41074	8.26811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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