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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005783 ID=TCONS_00005783|Name=TCONS_00005783|organism=Clytia hemisphaerica|type=transcript|length=1347bp AAAATAACACAGCAAGGTAAACAATATCAAGAAAGCAGCGACCTTTCTCA TAATACTGTATCAAGGAATCAACATCGACAGCAATGGTTTTCGCAGTACG CTTGACCGTATCAATCATAACTGTGGTTACACTTGCTATGTATTTAGTAT GTACGACCACGGATTATTGGCACGCAACTGAATACCATAACACGCTGCAT CATCAGTCTGTGATTCAAGGGACACATTCGGGAATATGGAATGGTTGCTA TGTTAGAGACCACAAGGAATTATGTGGACATATCCATCGAGAGGGTCACT GGCTAAGAGCAGTCCGAGCATTTATGATTTTGGGTATAGTTGCCAACTTT GTTGCGATGCTAGTTGCTTTGATGGGCCTGTTGAGAGAAGATATTTGCTA TCACATCGTTGGTTATACTCTACTCGTGAATGCTATATTCATTATGATTG GCTTATCAATTTACGCGGGGAAATCTGGAATACCTTTCAAGCGGAATATC GAAGAAGGGTATTTTGCGTGGTCTTTCATAGTAAGTTGGATTACATGGTT GTTAACCATTGTGGCGTGCGTTATTGCCTTCCTTGATGATTGTATTGGTG AAAGACCGACTTTCCAGCATGAGTAAAGTGGAATTAACACATTCGCTGCC AACTATGAGTGCACTCAAAATACCAGTAGTATTGCAAAGGGTAACTTTTG ATATGGAAACTTTTGCTTGcgtttttattgcatttttttttttgaaattt ataagcccaatagaccttttcataaattacgtcacgaacatcacttgcct cgttttgaaattattgacaAGGTgtttaactcccagcggattttattaaa actattttctatttataaaaataatttaatgtctcaaggggcataatcac catggtaattgtttgaatacgaagCAAGttatgtttgtgacgtaatttat gaaattcACGTCGAATTTTGCGTTGATTGGTATACAGTATGAAGGTGTTT AAAGCACTGCTTTCAAACCTTCGATAAAATCTTAAGAGGTCCAATTATCT GTTTCTGAAAAAGGTTTGGCAGTGAATGCATCGAATTCGATATTATTTGC acctaattttttttaccatacCAATATTTATCAATAATTTAAAATCCTGG TTATTATTTTAATTCAGATTTatctcaatttcaaaaaaatatttttaatt tcagtTTATATTTCAAACAATAACAAATTTACTAATATATTTTAAGGTGA TTTTAACAAGTTAAGATATTTTAATTTCGATGAAAAAATTAATATCAATT CCCTGAAAGAGTTGGAGAAACCAAAACATTAGATCTCTGTCCCACTA Run BLAST on NCBI protein sequence of TCONS_00005783-protein >TCONS_00005783-protein ID=TCONS_00005783-protein|Name=TCONS_00005783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MVFAVRLTVSIITVVTLAMYLVCTTTDYWHATEYHNTLHHQSVIQGTHSG IWNGCYVRDHKELCGHIHREGHWLRAVRAFMILGIVANFVAMLVALMGLL REDICYHIVGYTLLVNAIFIMIGLSIYAGKSGIPFKRNIEEGYFAWSFIV SWITWLLTIVACVIAFLDDCIGERPTFQHE Run BLAST on NCBI transcript from alignment at sc0000059:661632..667801- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005783 ID=TCONS_00005783|Name=TCONS_00005783|organism=Clytia hemisphaerica|type=transcript|length=6170bp|location=Sequence derived from alignment at sc0000059:661632..667801- (Clytia hemisphaerica) AAAATAACACAGCAAGGTAAACAATATCAAGAAAGCAGCGACCTTTCTCA
TAATACTGTATCAAGGAATCAACATCGACAGCAATGGTTTTCGCAGTACG
CTTGACCGTATCAATCATAACTGTGGTTACACTTGCTATGTATTTAGTAT
GTACGACCACGGATTATTGGCACGCAACTGAATACCATAACACGCTGCAT
CATCAGTCTGTGATTCAAGGGACACATTCGGGAATATGGAATGGTTGCTA
TGTTAGAGACCACAAGGAATTATGTGGACATATCCATCGAGAGGGTCGTA
AGTTGTATATACTTGTTCTCTAAGTTCCCGAATGGTAGGAGGTCCAAACA
AAAAGGGGTTCCTCCAAAAACTCCCCCAAATAAGGTAGTTTTAAGTTAAA
ACCAGGTTATTTTCAGCTTGTGATAGCTGAAAATATTTTCAAAAATAAAT
AACGAGGAGGCCCTAATAAGAACGAGGACAGTGTTTATTCGATACCTTAG
TGTAGCCTTTTCTTCATCTACAATAATTCTCGATGTTAGTCGCAGCCGTA
TAATATCACATCAGTTAATTGCACGATGCAAGAAAACGACTTCTTGAATA
TTTTGACGTTGATGGAAAAAGCATTTTCACTCTCGTTTCCACAATCACTT
TTACACGAAAAAACTAAACCAAATTCTTTAAATTTATCAAAGTTTGGATG
AATGGAAAATTTGATTTGCTAAGACGAAGATCAGGTCAGAGGTAAAAACT
GGAAAGGTTTTTCACACTGTTAATGGAGAAAAAAGAATAATTTTATGGTT
TCGAGAGTTTTCAATCTCAACGACACCTAGCAACCTACATAAACTTTTCG
ATTTTGACAGATGCACGTAGTGGAACCGCGAACCTCATCATAATCATAAT
AATAACTTTAACAAATTTAAAGAATTTGGTTTAGTTTTTTTTGTGTAAAA
GTGATTGAGGAAGTGAAGATGCTTTTTCCATCAACATCAAAATTTTCAAG
AAGTCGTTTTCTTGCATCGTGCAATTAACTGATGTGATAATAATTCAGGG
GGGCAGGCTACGAGTTTTCCTTTGTTGATCAATAATAAAAATGGGGATAG
AGACATAATACCAATAGAGGAATAGCAGGTGTAAGTAAGTAAGTAAGTAA
GTAAGTAAGTAAATGATTTATTTGTCCTAATAAGCGAGACGAGCGACCAC
ACTCATAGACAAAAAAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNTCATAAGTTATATCGTCTTCTTGA
TCGTCGACTTGAGAATCAAAGTTAGAAAAATGATTAGATTTTGAGTTGAG
ATGTTTAAAATAGGATTTTAGATGACTTATGTCTTTACCAATAGGTAGTT
TATCCTCAGTTTCAAAATTAGGTAAAGCGTCTTGCCTGCAGAGTTTACAG
AGCCAGATGTTTTTTACAAATTTTGGTTCAACGCCGAGGCACTTTGCATG
GGATCGTCCCTCACATTTTCCGTAAAGGATTTTAATTTCTGGTACCTTTT
TCTCCTTTTAGACTGGCTAAGAGCAGTCCGAGCATTTATGATTTTGGGTA
TAGTTGCCAACTTTGTTGCGATGCTAGTTGCTTTGATGGGCCTGTTGAGA
GAAGATATTTGCTATCACATCGTTGGTTATACTCTACTCGTGAATGGTAA
GTGACGTTGTTTTTATGTCCATTTAACATCCATAACATCCAAGTACACGT
TTTTATAAGAATAAATTATATAAAAATACTAGACTTCGGTTACCATAATG
TTAAGAACTAGGCTTCTGCTCATCCTCTAGCGAAAAAGTTTCTCATAGAA
GGAAGTATAGGTCTGCGAATCAGACTAGTTAAGAACAGGCTAAGAACAGT
TTAAGGCTTTGCAGACCTTAAACATCCGATTTCTTAGAAAAATGGACAAA
AGTAATCAAAAAATGAAAAAAATATGAATATGTTTTGAGAACATTTTTAG
GCTTAAAACTCAAAAGGTAGAGAAGGCTTCAAAACTGTTGGATAAAAAAA
CGTGTGAACGCTGGATTTAATCAACTTATTTGTCAATGATTTTTATATGA
ATTTGTTTGGCTACTCGAGTCAAAATTATATCGAGCTTAGAAAAAAGCTA
TCTTAATCATCTTGCGTCTTCAAAATCAGTTAATAGTGCTTCGTTTCTTT
ACTAGAATGAGGTATACACAGTAAACTTTCGCTTATTCGAAATTCTACTA
TTCGAATCTTTCTATAATTCAAACTTGTTTCCAGTTCACGTTAAGGAGAA
ACTTTCTTAACACTTTCTTTGATTCAAATATCTTTGTAAGGAGCAAATAA
ATTTCTCGGTTCGAGTTAGCGAGATTCAACTGTATTATTTACTGGTGGTG
ACGGTAGGATGTACGCACCCCCTCTGATATGTTTTGATATAAGAGTAACT
TTTTTCAATTTTCAGAAATCAAATAATTGTATTAACCTAAAAAAAAATTT
ATTCAAATTTAAAGGTCTCCCGTATAAAGCATACACTAATCAAGCTAATC
AAGTTTCTGAAACTCAAAAAACAAGAGACGGGTGTAACTCTCGGACGAGA
ATTTTATACACGATGCACATCCCCTAGATGCGTGCAGCCTAGTATGGTGG
TAATGATACACCCCTTTCTCACTGACCCACTGAGAACCCTTTCCACTGGG
AAAATTGGCTAAAATATCGTTCCTAGTGGAAAATTATACTCTAATTTTTG
TCACCACTGAAAATAATCAGATAATCAAATCTTCACTGTTGTGCTATTTT
CTGGCTCAAAAACAATGGAATTCGAATTTCCATCCATATCAATATATCAA
TACCCATTGAGTTTTAGTCCATTATTTTTACCCTCACTTGCCGATGAAAT
CCCACCTGGTCTGTGAGAAGGGGATGTAATGATTGTAATATTTTCTCCAT
TCTAGCTATATTCATTATGATTGGCTTATCAATTTACGCGGGGAAATCTG
GAATACCTTTCAAGCGGAATATCGAAGAAGGGTATTTTGCGTGGTCTTTC
ATAGTAAGTTGGATTACATGGTTGTTAACCATTGTGGCGTGCGTTATTGC
CTTCCTTGATGATTGTATTGGTGAAAGACCGACTTTCCAGCATGAGTAAA
GTGGAATTAACACATTCGCTGCCAACTATGAGTGCACTCAAAATACCAGT
AGTATTGCAAAGGGTAACTTTTGATATGGAAACTTTTGCTTGCGTTTTTA
TTGCATTTTTTTTTTTGAAATTTATAAGCCCAATAGACCTTTTCATAAAT
TACGTCACGAACATCACTTGCCTCGTTTTGAAATTATTGACAAGGTGTTT
AACTCCCAGCGGATTTTATTAAAACTATTTTCTATTTATAAAAATAATTT
AATGTCTCAAGGGGCATAATCACCATGGTAATTGTTTGAATACGAAGCAA
GTTATGTTTGTGACGTAATTTATGAAATTCACGTCGAATTTTGCGTTGAT
TGGTATACAGTATGAAGGTGTTTAAAGCACTGCTTTCAAACCTTCGATAA
AATCTTAAGAGGTCCAATTATCTGTTTCTGAAAAAGGTTTGGCAGTGAAT
GCATCGAATTCGATATTATTTGCACCTAATTTTTTTTACCATACCAATAT
TTATCAATAATTTAAAATCCTGGTTATTATTTTAATTCAGATTTATCTCA
ATTTCAAAAAAATATTTTTAATTTCAGTTTATATTTCAAACAATAACAAA
TTTACTAATATATTTTAAGGTGATTTTAACAAGTTAAGATATTTTAATTT
CGATGAAAAAATTAATATCAATTCCCTGAAAGAGTTGGAGAAACCAAAAC
ATTAGATCTCTGTCCCACTA Coding sequence (CDS) from alignment at sc0000059:661632..667801- >TCONS_00005783 ID=TCONS_00005783|Name=TCONS_00005783|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0000059:661632..667801- (Clytia hemisphaerica) CTATATTCATTATGATTGGCTTATCAATTTACGCGGGGAAATCTGGAATA CCTTTCAAGCGGAATATCGAAGAAGGGTATTTTGCGTGGTCTTTCATAGT AAGTTGGATTACATGGTTGTTAACCATTGTGGCGTGCGTTATTGCCTTCC TTGATGATTGTATTGGTGAAAGACCGACTTTCCAGCATGAGTAAACTGGC TAAGAGCAGTCCGAGCATTTATGATTTTGGGTATAGTTGCCAACTTTGTT GCGATGCTAGTTGCTTTGATGGGCCTGTTGAGAGAAGATATTTGCTATCA CATCGTTGGTTATACTCTACTCGTGAATGATGGTTTTCGCAGTACGCTTG ACCGTATCAATCATAACTGTGGTTACACTTGCTATGTATTTAGTATGTAC GACCACGGATTATTGGCACGCAACTGAATACCATAACACGCTGCATCATC AGTCTGTGATTCAAGGGACACATTCGGGAATATGGAATGGTTGCTATGTT AGAGACCACAAGGAATTATGTGGACATATCCATCGAGAGGGTCCTATATT CATTATGATTGGCTTATCAATTTACGCGGGGAAATCTGGAATACCTTTCA AGCGGAATATCGAAGAAGGGTATTTTGCGTGGTCTTTCATAGTAAGTTGG ATTACATGGTTGTTAACCATTGTGGCGTGCGTTATTGCCTTCCTTGATGA TTGTATTGGTGAAAGACCGACTTTCCAGCATGAGTAAACTGGCTAAGAGC AGTCCGAGCATTTATGATTTTGGGTATAGTTGCCAACTTTGTTGCGATGC TAGTTGCTTTGATGGGCCTGTTGAGAGAAGATATTTGCTATCACATCGTT GGTTATACTCTACTCGTGAATGATGGTTTTCGCAGTACGCTTGACCGTAT CAATCATAACTGTGGTTACACTTGCTATGTATTTAGTATGTACGACCACG GATTATTGGCACGCAACTGAATACCATAACACGCTGCATCATCAGTCTGT GATTCAAGGGACACATTCGGGAATATGGAATGGTTGCTATGTTAGAGACC ACAAGGAATTATGTGGACATATCCATCGAGAGGGTCCTATATTCATTATG ATTGGCTTATCAATTTACGCGGGGAAATCTGGAATACCTTTCAAGCGGAA TATCGAAGAAGGGTATTTTGCGTGGTCTTTCATAGTAAGTTGGATTACAT GGTTGTTAACCATTGTGGCGTGCGTTATTGCCTTCCTTGATGATTGTATT GGTGAAAGACCGACTTTCCAGCATGAGTAAACTGGCTAAGAGCAGTCCGA GCATTTATGATTTTGGGTATAGTTGCCAACTTTGTTGCGATGCTAGTTGC TTTGATGGGCCTGTTGAGAGAAGATATTTGCTATCACATCGTTGGTTATA CTCTACTCGTGAATGATGGTTTTCGCAGTACGCTTGACCGTATCAATCAT AACTGTGGTTACACTTGCTATGTATTTAGTATGTACGACCACGGATTATT GGCACGCAACTGAATACCATAACACGCTGCATCATCAGTCTGTGATTCAA GGGACACATTCGGGAATATGGAATGGTTGCTATGTTAGAGACCACAAGGA ATTATGTGGACATATCCATCGAGAGGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005783-exon-sc0000059-1575043694:667505..667801 | TCONS_00005783-exon-sc0000059-1575043694:667505..667801 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1575043694:663806..663940 | TCONS_00005783-exon-sc0000059-1575043694:663806..663940 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1575043694:661632..662546 | TCONS_00005783-exon-sc0000059-1575043694:661632..662546 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1510915933:667505..667801 | TCONS_00005783-exon-sc0000059-1510915933:667505..667801 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1510915933:663806..663940 | TCONS_00005783-exon-sc0000059-1510915933:663806..663940 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1510915933:661632..662546 | TCONS_00005783-exon-sc0000059-1510915933:661632..662546 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1491911889:667505..667801 | TCONS_00005783-exon-sc0000059-1491911889:667505..667801 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1491911889:663806..663940 | TCONS_00005783-exon-sc0000059-1491911889:663806..663940 | Clytia hemisphaerica | exon |
TCONS_00005783-exon-sc0000059-1491911889:661632..662546 | TCONS_00005783-exon-sc0000059-1491911889:661632..662546 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000059 | supercontig | sc0000059:661632..667801 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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