TCONS_00005780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005780
Unique NameTCONS_00005780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005780 ID=TCONS_00005780|Name=TCONS_00005780|organism=Clytia hemisphaerica|type=transcript|length=1454bp
GTTTTTTATACACAACGATTTGAGAATCACTTTCACCCAAATGGCACTAG
tcttacccagctggcacacaacgttgtttcgacgtttttctaacgttcac
aacgtccatataacgttagaaaaacgttgaaacaacgttgtgtgccagct
tggtACCCAGTTCGTGTGAGAAAATTCAAACAGCTAGACTCGATTTCCTT
CTTATGATCGACATTTTAACGACATAAATGGTATAGACAAAGTCAATAAA
GTATTGGGCTACTGGTTGAGCCGAATTGTATCTGATTGTTGGAGTAGGTA
TTTGCAAGGACTTAAAATCATACTTACTTTGTTATCTCCGCCTGGAGCAA
TCAatgttgaaatgaaaatttcagggTAGAAAGTATTTCCCATTTTAACT
TTGGAAATGTCaaacaaaatttacatttttactctagataaaaaaatcaa
acaatggCTCCATCAAATTTGTTATTGTCATATTGTGCTACCATCTTTGT
TGTGTTAATAGCAGTTGCCAACGGAATCAATACCAATGGGAATAACGGCT
GGAGAACAGATCCCAATTATGAGCCATGGACCAtGAAGGGGACCTTTCTC
CTCGGAACGCCAAATACATGCCAAAAACCAGTCACACCTCAAAACGGGCG
CTGGGTGTGTTCTTACACCCATGGTGAGAATGGGCGGTCACTGTGTATTT
TAGATTGCCAGCGTGGGTTTGTTGTAGAAGGGCGTCCTTTGATCTTCAAT
TGTGTTAACGGCATGTGGCGGATGTTTCCAACGCCCGACACCATCATTGA
AAACCCATGGGGCTCCTGCATTCCAATTGAAATCTACAAAGCACAAATGA
GTATGGATGACTTTAAACGATCATTGGACACACGCACTAAAAGTAACTTT
GAAATTCCGAAAAGAGAAGCATCAGAAAAAACGGTTTCACTTGACGATAT
CGAAAAACTCTTCTTgtaacaaaatatattttgatttttccttcGCCCAT
TCAAAAGACTGATATGTTGTTGGGTCTGGCAAAAACCAACACATTTGCAG
CTTGCATTCAGATTAGAGCTCTAATTTGTAAAAACGCCAAAATACAGATA
TGAATCTCCTAggattgtttttttgaaaattttctgaaaaaaattatgaa
tcaAGAGTCattttctaaaagaaatttgaaaaaattttctaaaaagaatt
ttacgacacaaaatcaatttttcatatCTAAAAAGAACAACCTTGTCGAC
TGGCCAAATTATTACCGCTGTACTAAATTCAATTTTGACATAAtggtttg
attcagtcactaaaTTCATAAAAATCACAATATTACTATACCCTCTCTCA
CTCTACGACGCGATTTTTCAAGAGAGAAAATTCATTTTAGCTTTGTCATG
ATTTATTCAATTGTATAATTTCCTAGAAGTaatttatttgaaatatatCT
CGCG
Run BLAST on NCBI

protein sequence of TCONS_00005780-protein

>TCONS_00005780-protein ID=TCONS_00005780-protein|Name=TCONS_00005780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MAPSNLLLSYCATIFVVLIAVANGINTNGNNGWRTDPNYEPWTMKGTFLL
GTPNTCQKPVTPQNGRWVCSYTHGENGRSLCILDCQRGFVVEGRPLIFNC
VNGMWRMFPTPDTIIENPWGSCIPIEIYKAQMSMDDFKRSLDTRTKSNFE
IPKREASEKTVSLDDIEKLFL
Run BLAST on NCBI

transcript from alignment at sc0000059:649334..651141-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005780 ID=TCONS_00005780|Name=TCONS_00005780|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at sc0000059:649334..651141- (Clytia hemisphaerica)
GTTTTTTATACACAACGATTTGAGAATCACTTTCACCCAAATGGCACTAG
TCTTACCCAGCTGGCACACAACGTTGTTTCGACGTTTTTCTAACGTTCAC
AACGTCCATATAACGTTAGAAAAACGTTGAAACAACGTTGTGTGCCAGCT
TGGTACCCAGTTCGTGTGAGAAAATTCAAACAGCTAGACTCGATTTCCTT
CTTATGATCGACATTTTAACGACATAAATGGTATAGACAAAGTCAATAAA
GTATTGGGCTACTGGTTGAGCCGAATTGTATCTGATTGTTGGAGTAGGTA
TTTGCAAGGACTTAAAATCATACTTACTTTGTTATCTCCGCCTGGAGCAA
TCAATGTTGAAATGAAAATTTCAGGGTAGAAAGTATTTCCCATTTTAACT
TTGGAAATGTCAAACAAAATTTACATTTTTACTCTAGATAAAAAAATCAA
ACAATGGCTCCATCAAATTTGTTATTGTCATATTGTGCTACCATCTTTGT
TGTGTTAATAGCAGTTGCCAACGGAATCAATACCAATGGGAATAACGGCT
GGAGAACAGATCCCAATTATGAGCCATGGACCAGTAAGCCATCTTCATTT
TTAACTTTCCTGAGGGCCATTTAATTAATTAGCAAACCAACATCATATCC
AGTAGAGATGATTCAAAAATTATTGCAAACGTTTACAGTACAGCCAAACA
TCTGTTAAATTCAAGCCAAAGAGTGTGCGTTTTTCCAAAATTTCCAAATC
CTTTATAGAGAAAAATGCGAGCAATTAGAAATACGTTTAAATGCCCGTTT
ATCTTTTGCCTTTTTCCTCCAGGTTTAGAGGCAAAATTGGAATGTCATTA
ATTACATAAATGGTACAACACTTAGTTTTATTCAAAGCGTCAATTTCTAT
TTTCATTCTTACTAAATTAACTTTTTCTTACTTTTAGTGAAGGGGACCTT
TCTCCTCGGAACGCCAAATACATGCCAAAAACCAGTCACACCTCAAAACG
GGCGCTGGGTGTGTTCTTACACCCATGGTGAGAATGGGCGGTCACTGTGT
ATTTTAGATTGCCAGCGTGGGTTTGTTGTAGAAGGGCGTCCTTTGATCTT
CAATTGTGTTAACGGCATGTGGCGGATGTTTCCAACGCCCGACACCATCA
TTGAAAACCCATGGGGCTCCTGCATTCCAATTGAAATCTACAAAGCACAA
ATGAGTATGGATGACTTTAAACGATCATTGGACACACGCACTAAAAGTAA
CTTTGAAATTCCGAAAAGAGAAGCATCAGAAAAAACGGTTTCACTTGACG
ATATCGAAAAACTCTTCTTGTAACAAAATATATTTTGATTTTTCCTTCGC
CCATTCAAAAGACTGATATGTTGTTGGGTCTGGCAAAAACCAACACATTT
GCAGCTTGCATTCAGATTAGAGCTCTAATTTGTAAAAACGCCAAAATACA
GATATGAATCTCCTAGGATTGTTTTTTTGAAAATTTTCTGAAAAAAATTA
TGAATCAAGAGTCATTTTCTAAAAGAAATTTGAAAAAATTTTCTAAAAAG
AATTTTACGACACAAAATCAATTTTTCATATCTAAAAAGAACAACCTTGT
CGACTGGCCAAATTATTACCGCTGTACTAAATTCAATTTTGACATAATGG
TTTGATTCAGTCACTAAATTCATAAAAATCACAATATTACTATACCCTCT
CTCACTCTACGACGCGATTTTTCAAGAGAGAAAATTCATTTTAGCTTTGT
CATGATTTATTCAATTGTATAATTTCCTAGAAGTAATTTATTTGAAATAT
ATCTCGCG

Coding sequence (CDS) from alignment at sc0000059:649334..651141-

>TCONS_00005780 ID=TCONS_00005780|Name=TCONS_00005780|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0000059:649334..651141- (Clytia hemisphaerica)
TGAAGGGGACCTTTCTCCTCGGAACGCCAAATACATGCCAAAAACCAGTC
ACACCTCAAAACGGGCGCTGGGTGTGTTCTTACACCCATGGTGAGAATGG
GCGGTCACTGTGTATTTTAGATTGCCAGCGTGGGTTTGTTGTAGAAGGGC
GTCCTTTGATCTTCAATTGTGTTAACGGCATGTGGCGGATGTTTCCAACG
CCCGACACCATCATTGAAAACCCATGGGGCTCCTGCATTCCAATTGAAAT
CTACAAAGCACAAATGAGTATGGATGACTTTAAACGATCATTGGACACAC
GCACTAAAAGTAACTTTGAAATTCCGAAAAGAGAAGCATCAGAAAAAACG
GTTTCACTTGACGATATCGAAAAACTCTTCTTGTAAATGGCTCCATCAAA
TTTGTTATTGTCATATTGTGCTACCATCTTTGTTGTGTTAATAGCAGTTG
CCAACGGAATCAATACCAATGGGAATAACGGCTGGAGAACAGATCCCAAT
TATGAGCCATGGACCATGAAGGGGACCTTTCTCCTCGGAACGCCAAATAC
ATGCCAAAAACCAGTCACACCTCAAAACGGGCGCTGGGTGTGTTCTTACA
CCCATGGTGAGAATGGGCGGTCACTGTGTATTTTAGATTGCCAGCGTGGG
TTTGTTGTAGAAGGGCGTCCTTTGATCTTCAATTGTGTTAACGGCATGTG
GCGGATGTTTCCAACGCCCGACACCATCATTGAAAACCCATGGGGCTCCT
GCATTCCAATTGAAATCTACAAAGCACAAATGAGTATGGATGACTTTAAA
CGATCATTGGACACACGCACTAAAAGTAACTTTGAAATTCCGAAAAGAGA
AGCATCAGAAAAAACGGTTTCACTTGACGATATCGAAAAACTCTTCTTGT
AAATGGCTCCATCAAATTTGTTATTGTCATATTGTGCTACCATCTTTGTT
GTGTTAATAGCAGTTGCCAACGGAATCAATACCAATGGGAATAACGGCTG
GAGAACAGATCCCAATTATGAGCCATGGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003280XLOC_003280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005780-proteinTCONS_00005780-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005780-exon-sc0000059-1575043694:650559..651141TCONS_00005780-exon-sc0000059-1575043694:650559..651141Clytia hemisphaericaexon
TCONS_00005780-exon-sc0000059-1575043694:649334..650204TCONS_00005780-exon-sc0000059-1575043694:649334..650204Clytia hemisphaericaexon
TCONS_00005780-exon-sc0000059-1510915933:650559..651141TCONS_00005780-exon-sc0000059-1510915933:650559..651141Clytia hemisphaericaexon
TCONS_00005780-exon-sc0000059-1510915933:649334..650204TCONS_00005780-exon-sc0000059-1510915933:649334..650204Clytia hemisphaericaexon
TCONS_00005780-exon-sc0000059-1491911889:650559..651141TCONS_00005780-exon-sc0000059-1491911889:650559..651141Clytia hemisphaericaexon
TCONS_00005780-exon-sc0000059-1491911889:649334..650204TCONS_00005780-exon-sc0000059-1491911889:649334..650204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:649334..651141 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106824	0	0	0.065383	0.274284	0.176337	51.5473	50.4529	39.8525	42.393	26.3205	39.8722	11.5864	7.42374	0.923368	1.01956	1.43449	2.41018	29.8886	48.6955	11.7821	10.7307	0.659395	1.48261	3.33105	2.70901	0.0390739	0.0523474	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000436Sushi_SCR_CCP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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