TCONS_00005777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005777
Unique NameTCONS_00005777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005777 ID=TCONS_00005777|Name=TCONS_00005777|organism=Clytia hemisphaerica|type=transcript|length=4313bp
CAATATGTATGTTTTATGACTTATCGAgacaaacaataacaaaaacaaag
aagGCTGTCTAACATTTTCTTTTACTTATTAAAAAAGAGTTACACTTTta
ggaaaaaattcaaatcacttTTAGCAATGGTTCATATATGATTCATCAAA
TCTATTTctcttttttgtgtttttattttttaattttccatcaataatca
atcaaaccaatcaatcTTGGATtaaatcaaattgaaatatattgTCGTCA
CCGTCAAAATTACCGTTAACGTCGTATCGTGTTTTTATTGATCGCTGATC
ATTGTAATTTCTTGGAAAGCAATACAGATTACATCACTACCGACCAATCA
GAATTGTTAAGATCGCACCaaagaaccaatcaaatttcacgAATCCTGCA
CATATTTTTGGGGAATACGATTTAGACaatatttgaaacaaaattttaac
GTTTTGTATAAAAACACACCTTAAAAAGGAGAAGAGAATTGCATTTATTG
TGTACATAttgtaaaaaaacaaacttacTTATTGTATAGACTTGAAGTTA
ACTATTATATATTTTCGGTATTcgaaaatactttcaaaactcaaattaac
catataaaaaaaacacggaaaataaattttcaaactgaACAAAAGTATAA
AATGCGTGATATGTCTTCTACAGAGAAAATCACCCAAGACTTGAACAACA
ATAACATCACAGCATCTACcaaacaaaacatcaaatcgCCAAGAAAGCCA
CAACATCGGCAACACAACAACGACAATGAAGTCGTTAATGGTGGCGCCGA
GAACCGAGAATCACAACGAGAATCATCGGCTAACCAAGGTAACAATGTCC
AACAAACAATGAAAGTCGGCAAAGAAGCAGTAGCAGGTCTACCAAACGAA
AATGCTTTACTTGAATTGATGGATAAATCTGGTTACCAGCTTACTCACCA
CAACGGTCAAAGAAAATTTGGTCCTCCTCCGAACTGGACAGGGCCGATCC
CATTGCGTGGTTGTGAAGTCTTCGTTGGCAAGTTACCACGTGACTGCTAC
GAAGATGAACTCGTCCCAGTCTTTGAGAAAGTCGGAAAAATCTACGAATt
acgtcttatgatggattataaCGGCCAGAACCGTGGTTACGCTTTCGTCG
TTTACTGCTCAAAACGTGACGCACAGAAATGCGTACGTACGCTGAACAAC
TATGAAATCCGTAAGGGTCGTCTGTTGGGTGTTTGCCAAAGTGTGGATAA
TTGCCGTCTGTTCATTGGTGGAATTCCCAAGAAAGTCAAAAAGGAAGATA
TCTTGGAAGAAATATCCAAAGTCACAGATTGTGTTGTTGATGTAATTGTC
TACCCATCCGCCACTGATAAATCCAAAAATCGTGGCTTCGCATTTGTGGA
ATATGAGAGCCACCGCTCAGCCGCTATGGCGCGCCGCAAGTTAATGAATG
GGAAAATTCAGTTATGGGGACATCCAATTGCTGTGGACTGGGCCGAACCT
GAACAAGAAGTTGATGAAGAAATCATGGACCAgGTCAAAGTATTATACGT
ACGAAACCTTCAACTGAGCACCACCGAAGAAACCATTGAGAATCTTTTCA
AACAACATGCGGACGTCGAGCGAGttaagaaaatcaaagattATTGTTTC
GTTCATTTCGCAACCAGAGAAGGCGCTAGAAATGCATTGGATAATATGCA
AGGAAAACAAATTGATGAGGCGGATGTAGAAGTAACCCTCGCAAAACCGG
TTGATAAGGAACATTATCGTCAACAAAGAGCGGTGGCAAAACTCATGCAA
ATGGCAAACCAATATCAGCAATTCCCTTCGGTGTTACCAGAACTTGCACC
GTTCAATGGAATGCCGCCGTTCAATCCACAAATGCCAGGGTTAATGTACC
CCCCGAGCTTCCCTGTACCAGGCGGTCAAGGAGTACGCCCTATTGCAAGA
GGGCGTGGGCGTACAGCAGCAGGATCAAGATCAGCGGGCGGACGGGCGTA
TGTTTTGAATGGCTTCCTTCCACAATTACACCCGATCCTTCAAGCATCAA
TGGCGGCTGGCGGTGGACAAAATCTGACACAAGAGCAGATGTATGATATA
TTGCCAGGAATGGATCTTTCACCGACGAACCCGGTCACATTGAAGCCACA
ATCTAACCGTTCACCTTTCCAATTACTGGAAGAGATTTGCCAAAAGAACC
AATGGGGAACTCCGATCTTCACTCTACATAGCACTGTCACCAATGATGGA
CAATTATTCTTATACAAGgTGACCATTCCAGCCCTTGGAAACACTTACCA
GCCACAAAAGTTATGCCGAAATATCGATGAAGCGAAAATGTACTCCGCAG
AATATACCATCTCACAAATAGcaaaCGAAGCTAGCATCTCACCTCAACTA
TCACCAGCACCCTATCCAGTACGTCCTGGAAGTATCCCTGGTAGAAACCC
TACCACCGAAGGAGGAGCACCTAACTATCCTGGGTATGTACCCATCACTA
CTGCAGCTGTTATGACTAAAGTAGCATGGCCCAATGGTACTCTTCCCCCT
CCCCCACCACCTAACTTCTTTGAGTTTCCGGATACTCGGCCAGACTTCCA
GCCATATAACCAACAATCTGGATACCACCAATATTAAGCCCTGAAATCAT
TTACTACTGATTTAAGGCTTTTGACTGAACACCATATGGCGGGTGGTGAA
GTTTGAAATAATTGAATTAAATTGACGCCCGATAGGGACATTTTTTTCtg
gttgatttttttgtttattttggtttttatggtgaaaagtttgagaaatt
tattttgttttacacaaaaaaagactttatttcaTGTAGAAACTATATAT
AGGAGGTATCATTTTCCGATACTTATTTCCCTTAAATACAAACAAGCCTT
GtgaaacaaacaacaacaaaatgtgAAATATGGAAAATCTTGTCCCAAAA
GAAGCGTTTTTCACCACTTTTTCTTGTCATTGACAGGGTTGGTAGAGCTG
TTTTCGTCAGCACTAGCAACGGAGAGGGTTCTAGTTTTGTCATAGACCTT
ATGAAACAATTTATAGATTCAGCCTACGGCCAACTGATATTTCATCTTAC
TGCAGCACATTTCACATTTTGTCCGAATTTTCTGAGGAAATCTTAAGTCC
TGTCCCAAAATGTTGACAGTCAAatagttttgttttgtttttgttctagA
TATATATTGtaagaataaaattcatttattttttgtttttccttttattt
tagaTATATTATATCTTGGCGCTGAAAAATAGCTtatgaaaatttatatt
tcgTAAAAAATGATATATTAGAGAAGTTGTAATATTATCTATATAGAACG
CAGGTATTATTTTCAATGGCGCGTTCTTAGTTGAAAATGCAGTTAGGGTT
TTAAAAAACGTGAGACTTCTTTGTACTTTTTTTTAACTCTAAGAAATTCT
GCATATAAGGTACTATCATGTAACCCTCTTATAGACGTAATAGGCGTAAC
ATATAATGCCAAGTTATTGTAcagatgttattttttttctaagagAATAC
AAAATAGTATTATagtaatatatatttttccgttatttttttcttatatc
aTACTAGAATCAATTGAAAGTTACTCtctcccagctgacacacaacgttg
tttcaacgtttatttaacgttcacaacgtccatataacgttaaaacaacg
ttgtgtgccagctgggctgtTAGCAAAAAATTTCAACCACCTCGAATCAT
ATTTTTGATTTagggaaatgtttttttttcgccaTATATGATTTCGACTT
TACTCACGCGCTTTACTCACGCGCTGTATCAGCGACAATTTACACTGGTG
ACAAATAGAAATGTTAGAAGTCAGTGCGCGCGTAAAGTTTTAATCGCCTA
TACTAGAGAGTAGCTGGATGCTCGCGTTTTAATCAGatagttgattttat
tttttgctgtCTTTgtattaaagaaaatatttcccGAAAAGCGCATACGT
CGTATGGGAAatgaattgtttttatttatagcaaatttaaaactcaaact
ttagaaaataatttgaattattttttgagtAACAGATATGGCTCTACATG
AATGTCTTGTGAAATTGAAtgataaaaattcttaattttatggattttat
cGGAAGAAagggaaacaattttttttagtgCGTTTATGGATACTTGATAT
TCTTGAGGTATTCTTTCAGTTGCATCTGCTAAAATGAAGAGTTTATTTTA
TAgtatataaatattttaatattagGGAAAGAGAAACTATGTCATGaact
attttctgaaaat
Run BLAST on NCBI

transcript from alignment at sc0000059:580213..593153-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005777 ID=TCONS_00005777|Name=TCONS_00005777|organism=Clytia hemisphaerica|type=transcript|length=12941bp|location=Sequence derived from alignment at sc0000059:580213..593153- (Clytia hemisphaerica)
CAATATGTATGTTTTATGACTTATCGAGACAAACAATAACAAAAACAAAG
AAGGCTGTCTAACATTTTCTTTTACTTATTAAAAAAGAGTTACACTTTTA
GGAAAAAATTCAAATCACTTTTAGCAATGGTTCATATATGATTCATCAAA
TCTATTTCTCTTTTTTGTGTTTTTATTTTTTAATTTTCCATCAATAATCA
ATCAAACCAATCAATCTTGGATTAAATCAAATTGAAATATATTGTCGTCA
CCGTCAAAATTACCGTTAACGTCGTATCGTGTTTTTATTGATCGCTGATC
ATTGTAATTTCTTGGAAAGCAATACAGATTACATCACTACCGACCAATCA
GAATTGTTAAGATCGCACCAAAGAACCAATCAAATTTCACGAATCCTGCA
CATATTTTTGGGGAATACGATTTAGACAATATTTGAAACAAAATTTTAAC
GTTTTGTATAAAAACACACCTTAAAAAGGAGAAGAGAATTGCATTTATTG
TGTACATATTGTAAAAAAACAAACTTACTTATTGTATAGACTTGAAGTTA
ACTATTATATATTTTCGGTATTCGAAAATACTTTCAAAACTCAAATTAAC
CATATAAAAAAAACACGGAAAATAAATTTTCAAACTGAACAAAAGTATAA
AATGCGTGATATGTCTTCTACAGAGAAAATCACCCAAGACTTGAACAACA
ATAACATCACAGCATCTACCAAACAAAACATCAAATCGCCAAGAAAGCCA
CAACATCGGCAACACAACAACGACAATGAAGTCGTTAATGGTGGCGCCGA
GAACCGAGAATCACAACGAGAATCATCGGCTAACCAAGGTAACAATGTCC
AACAAACAATGAAAGTCGGCAAAGAAGCAGTAGCAGGTCTACCAAACGAA
AATGCTTTACTTGAATTGATGGATAAATCTGGTTACCAGCTTACTCACCA
CAACGGTCAAAGAAAATTTGGTCCTCCTCCGAACTGGACAGGTGAGATAT
TGTTATTTCTAATAATCTACACATTTTTTTATTACAACAAACTATATAAG
AACATTTTGAAACCAAAAATCACCAAACCAAACCAACCAAAAAAAGATTT
TTGGTTTTGAAATATATTTTGATTGAAGAAGCTCTTCTCCTGGTTGGTTT
ATGGAGCACTCTTTGAATATGATTTCACCTCGTTTGATTAAGAATATTTT
GGCTTGAATGGCCAAAATATTAAGAGCAAGTTAAGAACATCTTTAAAGGC
TTCACAAACTCAACAACACCCGTTTTCCTAGGAGAATGAGCAAAAATACT
CACAAATTGGTAAAAATATAAGAACATGTCGAGAACATTTTCAGACTTAA
AACTCAAAAACTTAAGAACATCTAAGGCTTTAAAAAATTTGGATGTTCTT
ACAAAAAAAGGCTCTTTCACCAGTTAGCATTTGAAGTTTAGAGCTTACCC
TTTTCAACCCTGTCTCACAGCCCCGGTGGTTGTGTGGTTGAGATTGTAGA
ATCGCTCCCCCCCCCCCAGGAACAAAATTTAGGCCAAATTTACCAGGGGG
AGGTCCCACTGGGTATGGTATATGTTTTATTATGTTTTTATTCAATAGTA
ACTTAACTTTACTTAACTTTACAGGAGATTGGGAGCTTGGCAATTCTCAT
TGGCTTTTCTTTGTCAATTTTACAGCCTATAGACTAGGGTCTAAAGCTTA
AATACTGTCATATTCTAGTATGATATCATAACCTTCATGCCAAGTCATAA
TGATAAAATTCGACATGTTTTCCTTTTTAAGACAGCCAAATGCAAGAAAA
TGGCATGCTTAAGCTAATTTTTGGCAAGTTCTTATGTCATTGCACTATTT
TAAAACATCACTTAACAGGACCATGTGATACAAGTTCAAGCAGAAATATA
ACACACATTTTTCATGTTCAGGCATAAACTCTTATGAAAAATAAACAGAA
AAAAAAAATTTTGATTGAAACAATAGTACAGCATCCTCTTATAAGCGCCA
TTGAGAAGGAATGGTATTGGATAAGTGCCATACATACCAACATTAAGCCA
ACCCTATTTTAAAAAGTAACGTTTTGAAAAGGGGTAAATTACTTTATTTT
TAGAACATTATGCATTTTTCCTGAGCATGGTTTATTTTGTTGATACAGTC
AGACCAATTAAGGTACAAAATGATAAAGTCGAACTTTCGGCAACGTGGTG
AAGGGGCTTGATTCATTTTAAACAATCGATTCCAGAAAGAACTGGTCCTT
TATACCGTAGAAAGAGCATTTTGAAGATATGCCTTAACACGATGTTAATT
AGAAAAGAGAAATTTTCTGATGATATTAGATACTGAAAGGTCAAGTATAA
AGACCACCCCTTGATGGTAATTCAAATTTCAATAACAAGAAAAAACAATT
CATTGATTACCTAACAAAAATGTACCTTTTGCATGTGATTCATGTGACTT
TTGTACAAATCTGAATTCAAAAGAAATTGTAGCACATCATTTTTTACAGT
TACGAAAAAAATCAGAAAAGTTATTGAAGTGTGTGAGGTATTTATGACAC
TTGCATCAAAGCTGATAACAAAAGGTCCTAAAACATAATTTAAAGTCACT
AAGAGGTTCCCCAGTCGACCCTCAATTCATGTGTATTCATATGCTAAAAA
AGTCCAATTCACGTATTCACGTCAGAAAAAAGGCTCAGTCACGTGTCACG
CCCACTAAGGATTTACCATAACTAAGATTTAAAGTGAAAGTTAATTAAAA
TGTTTGTAGATGGTTATTGAGTAGTCACTTGAAATTTTGCCAAGCCCCTC
AAGTTAACATACATCTCAAGAAAAATATCTTTATTATAATTCAATGAAAT
AAGTAAATGCCAAAGTCGATGTGTAACTAAATCAAAATATATCCTGGCCT
ATTTCTTCAATTGTGGAAAAAAATTACAAAAATGCAATCAGAAAGGCTTC
AAATTACTTATGTACTTTCTAACAACGCAATGAAAGCATACCTGAATCTT
TTTTGAAATTTTTTTTAACCATAAATAGTAGGGGACCAAGTCTCACGTCC
CGTGGCAACTTTTTAGGACTAAACGAAACCTGTTCCATTTCAAAGTTTAG
ACTTTTTGAGAAGAGTCAAATTTTTAAGGCCTGGAATTTTTAGCGAAATT
CATATATTCAAACAATTTCCTTATAGGGCCGATCCCATTGCGTGGTTGTG
AAGTCTTCGTTGGCAAGTTACCACGTGACTGCTACGAAGATGAACTCGTC
CCAGTCTTTGAGAAAGTCGGAAAAATCTACGAATTACGTCTTATGATGGA
TTATAACGGCCAGAACCGTGGTTACGCTTTCGTCGTTTACTGCTCAAAAC
GTGACGCACAGAAATGCGTACGTACGCTGAACAACTATGAAATCCGTAAG
GGTCGTCTGTTGGGTGTTTGCCAAAGTGTGGATAATTGCCGTCTGTTCAT
TGGTGGAATTCCCAAGAAAGTCAAAAAGGAAGATATCTTGGAAGAAATAT
CCAAAGTCACAGATTGTGTTGTTGATGTAATTGTCTACCCATCCGCCACT
GATAAATCCAAAAATCGTGGCTTCGCATTTGTGGAATATGAGAGCCACCG
CTCAGCCGCTATGGCGCGCCGCAAGTTAATGAATGGGAAAATTCAGTTAT
GGGGACATCCAATTGCTGTGGACTGGGCCGAACCTGAACAAGAAGTTGAT
GAAGAAATCATGGACCAGGTGAGAAAAATATTTCTTTTGTGAGATTTGGA
GCCAGCTGGCACACGACGTTGTTTTGACGTTCATCTAACGTTATATGGAC
GTTGTGAACATTAAATTGACGTTGAAACAACTTTGTGTGCCAACTGGAAT
TTTGGAATCTTAATTTTCTTTCTTGGTTTGCACCGTTATGTTAGGATAAC
AGCTGTACAATCGATTCTCGCAAATTCGAGCTTATAATATATTCATAATT
AGACTCAATACCCAGCCCTTGTCAGTAAGAAATACCGCATATAACACTTT
CCATAATTCGAATGTCCCTTTAGTTCAAACAAATTAAACTTTCCATGCAA
TTGCATGCTTGCAAGCTCAAATTAGCAAAAGTCAACTTATTTGTAGGGTG
TGGGACAAATTTAAGAGGAGGGATGTAGTTGGAGATTTCAAAGTCAGTCT
CCAGCTTTATAACTAACAGCTATCAGAATTACGGCATCTATATCCTACTT
ATTGAGATAATTTCTCTGACATCGGTCATATAACGTTTTTACTTTTGTTT
TCATTGAAATTAAATATCTAAAATCTAGATTAAGAGCACCCTACGGATAT
AAAGTTAACATAAACATTGAGGTCGTAAAAGTTCGTCTCACCCAAGAAAT
TAATAGATAGATAGATAGACAACCATAGAAAAAGGAAAATTTGTTCCTGG
GTGAATAAGAAAAAGTTCTACCAGCGCCAAATGTTAAATTCTTCGAAATA
GGTGCTGCTTTCGAATTTAAAACTGAAATCTTTGAATTTGGTTGTTTGCT
TAGAACTAAACATAATGCTTTGATACACCCCTGTCTCAATGACCCGCAGA
AGGTATTTTAACCAATGGAAGAAACCAAATGCCATGAAATTATTTCTATC
TAATTATATTCAAATTCTTTTTTTACATCTAAATACTTTGGGAATTTTCA
AAGTCGGGGTAAGACTTGATGCGTGTTTTATCAAGTTTCAATCTATTTTG
CTTGTCAGAGCCTGAATTTTTAGATAATTTCAATGGTAACAGGGTCCTAT
AGGGCAGGGTACATTAGGAAAGTTATTCTCAACCCATTATAGCTATATTA
TAAGGAAAATCTTCAGAACTTCAAAAATTTGTCCTAAGCAATCAGTCACT
TATATTAAGCAAATTTCACTTTCATCAAAGAAATTCTTAAAATATTTGAA
TCACTTGACAGTTTCTAAGAGGTTTCACGCTTCGTCATGAGTTCCTCAGA
CAAAACATGGACAATCTTTTGCAAAAAGGATTTCTATTGAAAACAAAAAT
ATTTGTCAATTTGTTAACTACAGTCATTTTGAATGAACGTGGGATCAAAT
TACATTTTTTAACATAATTCTCGACTCTGTGAAAGTACAATTTCGAAAAA
AAATCTTAAAACTTTTGCATACAAATGTGTCTATCTCTTATTCGAACTTT
TTCTTATAAAGATCTTTCCGTGATTCGAACAAAAGAGCACCTCAGACCTC
AGCTTTAAGAATCTGACAAAAATCCTACCAAAATTCAAATCCTTCGCTAA
AAATATTTGGCTATTTAAAGTGGCGTTAGGAGACTCAGGTGATAGAGTTT
ATAAAACAATTATAATCGAAGGATTTATTTTTTCATGAAGTTTTGTTGAA
AATTGCGTAATGTTTTCTGTGTAAACAAGCGTTAGGAAATTTCACAAATG
TCAGAAATATTTTGAGATTTTTTTTAGCTGATGTTAGCACAAAACCTTCG
TTGACAGATTTTGAGTCTGTGTGCCTCTGATTGATTTATTAAGTAAAAAT
TTCTTTAAAATTCACTTGGTCTAAAACTTTGCACCCCTCTCACCGTCTGT
AAAGTTTATAATTAAATATTTCTTTTTGGTCAATTTCCACGAATGAAAGC
TGTGTCTACAACCCCCTACAACCCCTTGATAGAAATTTTTATTTGCAATG
ATTTCCAATGAAAAGTTAACCGGTAAAAATACAAAAAAAACGTATATATT
CACTGCTCGCGTAAGCATTGAAAAAAAAGCAACAACCGGCTGATCAACAT
TTAGGTTAGACGCTCGGCCGAGGGAACGGGCAATCAATTTATAAAATGAC
CGTTTAAATATGCTGCCTAAAATCAGGCCTTTAAAACTGGAGACTTGTGG
TGCAGAAAAATCTATCCGGTGCCGCTTGGGTGTAAATTCTACATTCAAAG
TAAATTATTCCTATAGCCAGGGCATTCTTATGAAAAACCACAAATTAGAG
ACATTTTTCATGTTGTTTGGTAGAAATGTTTACTTTAAAACAGTCAATTG
ACCTAAATGTATCTTATTTGTTTGGACTTGTTAACTTGGGTAAATATGTG
GTACAGCTCTTTTTGAAAAGGCCGTTCGAATATAGATGCAACTAATTCAA
TAAAGTTAGCGAATAACCTTTCATCTTTCGTTGAAATTAAACCGAGAATT
ACTTAAAACACCCCCTTCTCACAGAACCCACTGGGGCCCTTCTCACAGGA
AAAATTGGCCAAAATATCATCCCCGGTGGAAAATTATCCTCCAATTTTGG
TCCCCACTGTAAATAATCAAATAAACCAATCCCGATTGGGTAAAAAAGCC
CTACCGGCTCTGTGAGAAGGGGGTTTCTTAAAGTTTAACTAGTCTTTTAT
CGTACACATGATCTGCATTAGCTTCATGAACAACTCGGCCCCGGCATATT
AGTTTGCATCAACGTTTTATAATTACTACCTATGATACTGTGATCAAGGC
TCTTAACTGATGTAGTAGTTGAATGATATCATCGTTTTCATGTCTAAACG
TATTTTCTCTTACGACAAACGTTCTCTGAAAGTAGGCAGAAGAGAAAGTC
TATCACAGGGGCAAACAAGTGATTTACGGTAGTTTCTTGCTCAGACGTAT
TCTCTCTTAAGATGAAAATTTTCTGAGAGCAAACAAGAAAAACTTTTCAA
TAGCCTCAAAAGATCTGAAACCTTGAATTTTCTTACGCATATTTTGGCCT
TATTTCCTAAGAAATTTCATATTTTTTAGAGTATGTAAATCTATAAAAAG
TTCTAAAATAATGTTCTTTGGTTCTCATGTTCTTATGTTACACATTGTTC
TTATTCTTGTATAAAAGAGATAGAGATCTTGTAACAACTTGTACTAACTA
GTTGTATGTTCAGTAGATCAAACACTCAAATATCCAATATTTGGAAATAT
AATCCACCAACTTTTTTCTTGCTTTGACTTGTAATGAAAACAAAGTGAAA
ACATCAATCAAACGTATCTAGCCTTAGGCGACGTGGCCTTATCAGAGTTA
AGCAACAAAATATCAAATGATTTGCAAGATCAAAGTCCTTCAAAAATTAG
CTTATTCCATTGACTATATTGTAGTTTACTATATTGTAACGAAAACATAA
AATATTGCAAAAGAAAGGTCTGATCATGTGTAGAACTCTCAAAATGGCGG
CATCTGTTAGAGATGCACTATACATGTTTAAAAGCCATTCTTGTAGCCTA
TGCAACAAATGCACTCCGTCCGCAAATTTTATCACAAAGAATTTGTAAAA
AATTCAACGTCATTCCGCCCTAGTGTACTTCAGCCTAATCCCGTGCCATT
TTTAACGTCCATTTGACGTTGCAAGGACGCTTTAAGTTGATGTTAAAACA
ACGTTGAAAAGAGAATTACTCAGGAGGTGAGATGAATTTGAAAAGTGCAA
GCAACGCGGGACGGGGCGGAGTAAACAGTGGCAGAGGTTTCCTGTTTATT
TTGTTACCAAACTCTGTCTCCAATATTTCTTTCCGTAAACTGTCCTCGCG
GCTGTAAACTCTTTTCTATCCCTCTAACGAACGATAACATTAGCCATGTT
GTGCGCAATGTTAGGATGAGATGAAAACAATCCACCATTGACTAACCATT
GTCCTTTCTTTAACCCCCAGGTCAAAGTATTATACGTACGAAACCTTCAA
CTGAGCACCACCGAAGAAACCATTGAGAATCTTTTCAAACAACATGCGGA
CGTCGAGCGAGTTAAGAAAATCAAAGATTATTGTTTCGTTCATTTCGCAA
CCAGAGAAGGCGCTAGAAATGCATTGGATAATATGCAAGGTACGATAAAA
GGAGTACTTATAGTCTGATCATAAATGAGGGTATTATATTTTTCCTTTTT
CTTCTCCTTCTTCTGCAACTGGCATCAAATTTTTCATGGCATGAATAAAC
ATATATTGGATAATAAATCTTATAGTTTTTTATAAGATCACTTCAAAATG
CTTAATTAAAACCTTATTAGCTGATCAGACTTAAGTTTTCAGGGTGATAC
GTAATCATCAATCTACAATCATGGTCGAAATCTATTGAGAATAATTAAGC
TTATTTCCTCGTTTTTCAAAATTTGGAGTTCGGGCGAGAAAGTCAACTTC
GGACCATGTCTTAGATTTAATCGGATATTTCAATTTGGCTCAGGTTTATA
GACTTCCAGGCTATATTATGAGCCTTATTGGACCATTTTTGAACTTTTGG
ATCCTAAGCTCTTAAGTCTTATGTTAAAACTCTACCCTTCCAACCTAAGT
TAGAGCGCTTCCAAATCGATTGTGGCTATAAGATTTCGTGGGAATTTCCC
TTCTTTCTCAAATATTACGACCATGATTGTATACGTCATAGCTGATGACC
TATACGTCATTTATTATACATTCTTCACTACAGGAAAACAAATTGATGAG
GCGGATGTAGAAGTAACCCTCGCAAAACCGGTTGATAAGGAACATTATCG
TCAACAAAGAGCGGTGGCAAAACTCATGCAAATGGCAAACCAATATCAGC
AATTCCCTTCGGTGTTACCAGAACTTGCACCGTTCAATGGAATGCCGCCG
TTCAATCCACAAATGCCAGGGTTAATGTACCCCCCGAGCTTCCCTGTACC
AGGGTGAGTGATTTTATAATGTTTACACCCTTAGTGACCTAATACTTTGG
CCCTTAGATAAACGTTGTTCTAACGAATGATTCTGTCAAGGTAATAAAAT
AAAGGTCGAGAGACAATAACGATTTTAGCATTCCCGCTTTTACATTTTAT
CTTTTCATTATTTCAGATTTTTTCTTTTCTTGATTAGATTTCCATATCTT
AGCCTCTCTTTAAAATCAAATTCCATTTTCATTCTTTTACAGCGGTCAAG
GAGTACGCCCTATTGCAAGAGGGCGTGGGCGTACAGCAGCAGGATCAAGA
TCAGCGGGCGGACGGGCGTATGTTTTGAATGGCTTCCTTCCACAATTACA
CCCGATCCTTCAAGCATCAATGGCGGCTGGCGGTGGACAAAATCTGACAC
AAGTAGGTGTTCGGTTTATACTTTAAAAAAAGTTTTTTCGAAGTAATACA
AATTTTGAAGATAAAAATATTAGAGAAGAAGGACAGTTTTGAAGAGTTAG
ATAAATAACGAAACAACTAGCCGAAATTAATAACACGAAGAAGATTTCAT
ATGAGACACAAAAGAAATATCAGGGTCACTCTTGCTTGAGAGACAATGTA
AGGAAGCGTTCCAATTATTTTGACTCTCTGCATTTGTTTCTTGTAGGAGC
AGATGTATGATATATTGCCAGGAATGGATCTTTCACCGACGAACCCGGTC
ACATTGAAGCCACAATCTAACCGTTCACCTTTCCAAGTAAGTATAAAATC
ATCTTCAACTTTAGTGATTCAATATAATAGAGTTCTCTCAGTTTGAAGAC
TCATAAATGAATTTTGTTAAAAGTATTTTCTACAACACCCCTGTGTCACA
GACCCGCTGGGACCCCAGCCCCACATGGAAGATTTGGTAAAAATTAAGTC
CCCGTTGGGAAAATACCCTGGAATTTCAGCCCCACTGGGAAATTGACTTT
AATTTTGTCCCCATGCAAAATTCCATGTTTAAAAATTTTACTTCAAAACC
ATTCCTCTTGTATTTTTTATCATTTGACTTTTTATCCCCACCGGGGCTGT
GAAACAGGGGTGTAATAACATTTTCAATCTTCTAATTTTTGTTTCAGTAA
CAAAAAAACTTTAGTGATTCAATACTTCAGTTTGAAGTTTCATAAACGCA
TTTTTTTAAAAGTTTCTACATAAGTTTGCAGTAAGAAACGACCTACTGAC
TATTTCCCTTATAATAGCTCTTTGCTCCTCGCACTTACACCAAGTACCAT
TTTGACCTTTTCTTTTATTGCTGAACACTAACTAAGCAGAAAGGCATTGA
ACAACAGGTTCTATTTCTTTAATAAAACCTGGGAAGAAATTAAATCCACG
ACTTTTACCACTTTTAGACCAAAACCTCTGATCTTAGAAAAACTTTCTCC
TTGATTTTATAGTTACTGGAAGAGATTTGCCAAAAGAACCAATGGGGAAC
TCCGATCTTCACTCTACATAGCACTGTCACCAATGATGGACAATTATTCT
TATACAAGGTAAATAGTATAGTCAACTCTCTCCTGTTCGAACCTTCCTGT
AATTCGAGTTAAATATTGATCTCCTCAGCTGGAGAATCGGGAAATACTTT
CTGTAATTTGGGGGACAAGCTGGAGTTTTTACAAGCTCTTATTTGATTTG
GTTGGTCGTTAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAAC
GCGTCATCTCTATCACTTCAAATGACCAATTAGTGAAGTATCTTGTAAAA
ACTCCAGCTCATCCCGTAATTTGAACCGTTCTCTGGTTTAGAAAAGTATT
GATCTCTTGAAGTTTCCGATTAAAGATTTTTTTTAGCTGGGATCAAATAA
CTGTGTTCGGGTTAAAGGTCAGCCTTAATTTTAAGATTTAAACCTGAATA
TCAAATTAAATAATCAAATTATTTTCCAAACAGGTGACCATTCCAGCCCT
TGGAAACACTTACCAGCCACAAAAGTTATGCCGAAATATCGATGAAGCGA
AAATGTACTCCGCAGAATATACCATCTCACAAATAGGTAAGATTCGCCAA
ATTGGACATACATGTTTTTTCTATAAGCATAAAGTATATAAGCATATGTA
GGCTCAGTTTTTGTTACCTATACAATGGCTCTATTGTTTAGAACAAAAGA
ATGCTAAGCATAATGCGAGCCTGATGTAGGGGTAGTTTGTTGAAAAAGCA
TGTATTTTAAAATGAGATAAAAAACATAATAATCTTAAAAAATATCAACT
GGCATTTCTACCCGTCATTCTATCTATCCGTTGGAAACTGAAGATGAAAA
TGTAGAATGGAAATTATGTTGAATTCCTTAGGCAATATACGACATTTTTG
CACAAATGAAAATATGCGGTCGCTTAAAACAGTTCTTTTTTATTTTTAGC
AAACGAAGCTAGCATCTCACCTCAACTATCACCAGCACCCTATCCAGTAC
GTCCTGGAAGTATCCCTGGTAGAAACCCTACCACCGAAGGAGGAGCACCT
AACTATCCTGGGTATGTACCCATCACTACTGCAGCTGTTATGACTAAAGT
AGCATGGCCCAATGGTACTCTTCCCCCTCCCCCACCACCTAACTTCTTTG
AGTTTCCGGATACTCGGCCAGACTTCCAGCCATATAACCAACAATCTGGA
TACCACCAATATTAAGCCCTGAAATCATTTACTACTGATTTAAGGCTTTT
GACTGAACACCATATGGCGGGTGGTGAAGTTTGAAATAATTGAATTAAAT
TGACGCCCGATAGGGACATTTTTTTCTGGTTGATTTTTTTGTTTATTTTG
GTTTTTATGGTGAAAAGTTTGAGAAATTTATTTTGTTTTACACAAAAAAA
GACTTTATTTCATGTAGAAACTATATATAGGAGGTATCATTTTCCGATAC
TTATTTCCCTTAAATACAAACAAGCCTTGTGAAACAAACAACAACAAAAT
GTGAAATATGGAAAATCTTGTCCCAAAAGAAGCGTTTTTCACCACTTTTT
CTTGTCATTGACAGGGTTGGTAGAGCTGTTTTCGTCAGCACTAGCAACGG
AGAGGGTTCTAGTTTTGTCATAGACCTTATGAAACAATTTATAGATTCAG
CCTACGGCCAACTGATATTTCATCTTACTGCAGCACATTTCACATTTTGT
CCGAATTTTCTGAGGAAATCTTAAGTCCTGTCCCAAAATGTTGACAGTCA
AATAGTTTTGTTTTGTTTTTGTTCTAGATATATATTGTAAGAATAAAATT
CATTTATTTTTTGTTTTTCCTTTTATTTTAGATATATTATATCTTGGCGC
TGAAAAATAGCTTATGAAAATTTATATTTCGTAAAAAATGATATATTAGA
GAAGTTGTAATATTATCTATATAGAACGCAGGTATTATTTTCAATGGCGC
GTTCTTAGTTGAAAATGCAGTTAGGGTTTTAAAAAACGTGAGACTTCTTT
GTACTTTTTTTTAACTCTAAGAAATTCTGCATATAAGGTACTATCATGTA
ACCCTCTTATAGACGTAATAGGCGTAACATATAATGCCAAGTTATTGTAC
AGATGTTATTTTTTTTCTAAGAGAATACAAAATAGTATTATAGTAATATA
TATTTTTCCGTTATTTTTTTCTTATATCATACTAGAATCAATTGAAAGTT
ACTCTCTCCCAGCTGACACACAACGTTGTTTCAACGTTTATTTAACGTTC
ACAACGTCCATATAACGTTAAAACAACGTTGTGTGCCAGCTGGGCTGTTA
GCAAAAAATTTCAACCACCTCGAATCATATTTTTGATTTAGGGAAATGTT
TTTTTTTCGCCATATATGATTTCGACTTTACTCACGCGCTTTACTCACGC
GCTGTATCAGCGACAATTTACACTGGTGACAAATAGAAATGTTAGAAGTC
AGTGCGCGCGTAAAGTTTTAATCGCCTATACTAGAGAGTAGCTGGATGCT
CGCGTTTTAATCAGATAGTTGATTTTATTTTTTGCTGTCTTTGTATTAAA
GAAAATATTTCCCGAAAAGCGCATACGTCGTATGGGAAATGAATTGTTTT
TATTTATAGCAAATTTAAAACTCAAACTTTAGAAAATAATTTGAATTATT
TTTTGAGTAACAGATATGGCTCTACATGAATGTCTTGTGAAATTGAATGA
TAAAAATTCTTAATTTTATGGATTTTATCGGAAGAAAGGGAAACAATTTT
TTTTAGTGCGTTTATGGATACTTGATATTCTTGAGGTATTCTTTCAGTTG
CATCTGCTAAAATGAAGAGTTTATTTTATAGTATATAAATATTTTAATAT
TAGGGAAAGAGAAACTATGTCATGAACTATTTTCTGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003278XLOC_003278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005777-exon-sc0000059-1575043694:592163..593153TCONS_00005777-exon-sc0000059-1575043694:592163..593153Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:589436..589977TCONS_00005777-exon-sc0000059-1575043694:589436..589977Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:585365..585533TCONS_00005777-exon-sc0000059-1575043694:585365..585533Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:584551..584770TCONS_00005777-exon-sc0000059-1575043694:584551..584770Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:584152..584311TCONS_00005777-exon-sc0000059-1575043694:584152..584311Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:583818..583907TCONS_00005777-exon-sc0000059-1575043694:583818..583907Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:583046..583141TCONS_00005777-exon-sc0000059-1575043694:583046..583141Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:582518..582620TCONS_00005777-exon-sc0000059-1575043694:582518..582620Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1575043694:580213..582154TCONS_00005777-exon-sc0000059-1575043694:580213..582154Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:592163..593153TCONS_00005777-exon-sc0000059-1510915933:592163..593153Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:589436..589977TCONS_00005777-exon-sc0000059-1510915933:589436..589977Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:585365..585533TCONS_00005777-exon-sc0000059-1510915933:585365..585533Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:584551..584770TCONS_00005777-exon-sc0000059-1510915933:584551..584770Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:584152..584311TCONS_00005777-exon-sc0000059-1510915933:584152..584311Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:583818..583907TCONS_00005777-exon-sc0000059-1510915933:583818..583907Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:583046..583141TCONS_00005777-exon-sc0000059-1510915933:583046..583141Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:582518..582620TCONS_00005777-exon-sc0000059-1510915933:582518..582620Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1510915933:580213..582154TCONS_00005777-exon-sc0000059-1510915933:580213..582154Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:592163..593153TCONS_00005777-exon-sc0000059-1491911889:592163..593153Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:589436..589977TCONS_00005777-exon-sc0000059-1491911889:589436..589977Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:585365..585533TCONS_00005777-exon-sc0000059-1491911889:585365..585533Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:584551..584770TCONS_00005777-exon-sc0000059-1491911889:584551..584770Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:584152..584311TCONS_00005777-exon-sc0000059-1491911889:584152..584311Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:583818..583907TCONS_00005777-exon-sc0000059-1491911889:583818..583907Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:583046..583141TCONS_00005777-exon-sc0000059-1491911889:583046..583141Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:582518..582620TCONS_00005777-exon-sc0000059-1491911889:582518..582620Clytia hemisphaericaexon
TCONS_00005777-exon-sc0000059-1491911889:580213..582154TCONS_00005777-exon-sc0000059-1491911889:580213..582154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:580213..593153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.046075	0.0449304	0.188758	0.204155	0.186404	0	1.63107	1.99031	3.1753	4.8366	7.47542	2.0561	25.3995	24.2912	34.1594	25.5566	35.1538	26.3785	55.4691	52.3195	48.2007	56.6143	26.3966	41.6165	51.8218	45.9663	4.73126	7.83326	41.6992	34.5569
Blast
[Close]
BLAST of TCONS_00005777 vs. Swiss-Prot (Human)
Match: A1CF (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1)

HSP 1 Score: 509.605 bits (1311), Expect = 7.936e-164
Identity = 274/525 (52.19%), Postives = 344/525 (65.52%), Query Frame = 1 
Query:  874 EAVAGLPNENALLELMDKSGYQLTHHNGQRKFG-PPPNWTGPIPLRGCEVFVGKLPRDCYEDELVPVFEKVGKIYELRLMMDYNGQNRGYAFVVYCSKRDAQKCVRTLNNYEIRKGRLLGVCQSVDNCRLFIGGIPKKVKKEDILEEISKVTDCVVDVIVYPSATDKSKNRGFAFVEYESHRSAAMARRKLMNGKIQLWGHPIAVDWAEPEQEVDEEIMDQVKVLYVRNLQLSTTEETIENLFK--QHADVERVKKIKDYCFVHFATREGARNALDNMQGKQIDEADVEVTLAKPVDKEHY----RQQRAVAKLMQMANQYQQFPSVLPELAPFNGMPPF-NPQMPGLMYPPSFPVPGGQ----------GVRPIXXXXXXXXXXXXXXXXXXYVLNGFLPQLHPILQASMAAGGGQNLTQEQMYDILPGMDLSPTNPVTLKPQSNRSPFQLLEEICQKNQWGTPIFTLHSTVTNDG-QLFLYKVTIPALGNT------YQPQKLCRNIDEAKMYSAEYTISQIA 2373
            + ++G   E AL  L+ ++GY L   NGQRK+G PPP W    P RGCE+F+GKLPRD +EDEL+P+ EK+GKIYE+R+MMD+NG NRGYAFV + +K +A+  ++ LNNYEIR GRLLGVC SVDNCRLF+GGIPK  K+E+IL E+ KVT+ VVDVIVYPSA DK+KNRGFAFVEYESHR+AAMARRKL+ G+IQLWGH IAVDWAEPE EVDE+ M  VK+LYVRNL LST+EE IE  F   +   VERVKKI+DY FVHF+ RE A  A+  + GK +D + +EVTLAKPVDK+ Y    R       ++Q    Y     V      + G P F  PQ    +    FP   G            VR I       AAG R  GGR Y+    L + + +           +  ++++YDILPGM+L+P NPVTLKPQ  +   Q+LEEICQKN WG P++ LHS +  D  QLFLYK+TIPAL +       + P KL   +DEAK Y+AEYT+  + 
Sbjct:    9 DGLSGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEYTY-SLGQVYDPTTTYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNVPVGAAGVRGLGGRGYLAYTGLGRGYQV---------KGDKREDKLYDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTLQTLG 523
The following BLAST results are available for this feature:
BLAST of TCONS_00005777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
A1CF7.936e-16452.19APOBEC1 complementation factor OS=Homo sapiens GN=... [more]
back to top