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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005752 ID=TCONS_00005752|Name=TCONS_00005752|organism=Clytia hemisphaerica|type=transcript|length=1076bp
ATTACATTAGTTTGAATGTATTTATAATAAGTCTAGTAGAAGAGAGTTGT
GTTTGTGTGTGTTTAGCATGGCTACTACAAGGATGATGCAAGAAGAAAAA
ACGGACCCCATTTCTGGTTGTAATTTGACATATCTATCAATCGCATTCAA
ATACAATTTATACTATTGTCTTGGAAAGGCCAAAAAGACTCGTGCAGTGG
TCAGCAAACTTGATCATAGAGATTTAGATACTGGTATTGTCACCTTATGG
ACTGGTAGCTGTGCTGAAGGATTGTGTCTTCCTATCGAAAATCACGGATA
CATCAATGTTAAATTTGACGTGGATCAGATGCAAGTATTGGAGATTATAC
ATCGAAATAAATGCTCCGATGAAACTCAGCATATTCGTAGATGTTTTTAT
GTCAAGGCTAGTGATGATCATCCAGGCTATTGCCATCTGTATTCATGTCA
CAGCGATCAAGAATTGACAAGCTCACGAATGCGAGAAATGATACGAAATT
TAGCGGATGATATTTTCCCCGGCGCTCGTGCGAACAATGATCTCAGTACA
GCTGTTACATTCAGTCAAAGAATGAAACCCGAATTTTATCATGCCTTACA
CATGGATACTGATGTTGTACTATGTTACAAACTAATTGAATGGCCTTTTG
AAGCGAACGAGTGGTTGTCAAGGGAACGTATCAATAATTGGCCATCACCT
GAAACAATTGCAGAAATAATTCGCGATGGATGTCACCTTGTTCCAAAACC
ACacccactttcaaaacaaaactataCAGAATGGAGGTATTCTTTTTCTG
GGGCTGAACTTGCTCTTGGCTGGGCTTTTACAGACGCCCAACTCTTTTGT
TATATCGTTACCAAggtcttttttaaatttgagcAGCTTGTACATTCAGA
ATCTGTCTTGAAGACGTATTATTTGAAAACAACAATGTATTGGTTTTGCG
AACAGTTAAATGAAGAGGAAGCGGGATTtctgatgttttgaaaaatagtc
AGAAATCTAGTATCTTATCGGTTCCGGACGAATGTTCCGGCATGCGAATT
ATTGAGCATGCGCATAAAAGGGGANN Run BLAST on NCBI protein sequence of TCONS_00005752-protein >TCONS_00005752-protein ID=TCONS_00005752-protein|Name=TCONS_00005752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
MATTRMMQEEKTDPISGCNLTYLSIAFKYNLYYCLGKAKKTRAVVSKLDH
RDLDTGIVTLWTGSCAEGLCLPIENHGYINVKFDVDQMQVLEIIHRNKCS
DETQHIRRCFYVKASDDHPGYCHLYSCHSDQELTSSRMREMIRNLADDIF
PGARANNDLSTAVTFSQRMKPEFYHALHMDTDVVLCYKLIEWPFEANEWL
SRERINNWPSPETIAEIIRDGCHLVPKPHPLSKQNYTEWRYSFSGAELAL
GWAFTDAQLFCYIVTKVFFKFEQLVHSESVLKTYYLKTTMYWFCEQLNEE
EAGFLMF Run BLAST on NCBI transcript from alignment at sc0000059:100526..102058- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005752 ID=TCONS_00005752|Name=TCONS_00005752|organism=Clytia hemisphaerica|type=transcript|length=1533bp|location=Sequence derived from alignment at sc0000059:100526..102058- (Clytia hemisphaerica)
ATTACATTAGTTTGAATGTATTTATAATAAGTCTAGTAGAAGAGAGTTGT
GTTTGTGTGTGTTTAGCATGGCTACTACAAGGATGATGCAAGAAGAAAAA
ACGGACCCCATTTCTGGTTGTAATTTGACATATCTATCAATCGCATTCAA
ATACAATTTATACTATTGTCTTGGAAAGGCCAAAAAGACTCGTGCAGTGG
TCAGCAAACTTGATCATAGAGATTTAGGTATGTTTAAATCTGACGTCGTT
CCAGTCTAGTGTGTGTTTAAATCTGAAAAATGTTGACAAATTACTCTATC
AAATACAATATAGGCTACGTCATATCTTTCTTCGTTTCGAGCGTAAAACT
CCTACTCTTCGGGATATGCGCACTACTCTTGTTTTGAATATTGAAATTCT
CCGGATAAATCGCATGTGCACTGAGGTTTTAATGAAACAATAGAGAGTTT
CGAAACCTAAGCCAATCAGCTGTGTTTTAAACATTCTTTTATTTGAAATC
TCTATTGATAAACATCTTTTGTGAAAGTTGTCTATTATGTTCAAACTTAT
TAATAAGCAATTCCCGGTGGGGGTTACTAGCGGCCACCTACAGTAGTGCC
TATAGACCAAGAGTAAAGCCTAAAAGCCTGGAGCTGTCTATCGTGTAGAC
TAATACAATACGACTCTCAATCTTTTAATTTAAGATACTGGTATTGTCAC
CTTATGGACTGGTAGCTGTGCTGAAGGATTGTGTCTTCCTATCGAAAATC
ACGGATACATCAATGTTAAATTTGACGTGGATCAGATGCAAGTATTGGAG
ATTATACATCGAAATAAATGCTCCGATGAAACTCAGCATATTCGTAGATG
TTTTTATGTCAAGGCTAGTGATGATCATCCAGGCTATTGCCATCTGTATT
CATGTCACAGCGATCAAGAATTGACAAGCTCACGAATGCGAGAAATGATA
CGAAATTTAGCGGATGATATTTTCCCCGGCGCTCGTGCGAACAATGATCT
CAGTACAGCTGTTACATTCAGTCAAAGAATGAAACCCGAATTTTATCATG
CCTTACACATGGATACTGATGTTGTACTATGTTACAAACTAATTGAATGG
CCTTTTGAAGCGAACGAGTGGTTGTCAAGGGAACGTATCAATAATTGGCC
ATCACCTGAAACAATTGCAGAAATAATTCGCGATGGATGTCACCTTGTTC
CAAAACCACACCCACTTTCAAAACAAAACTATACAGAATGGAGGTATTCT
TTTTCTGGGGCTGAACTTGCTCTTGGCTGGGCTTTTACAGACGCCCAACT
CTTTTGTTATATCGTTACCAAGGTCTTTTTTAAATTTGAGCAGCTTGTAC
ATTCAGAATCTGTCTTGAAGACGTATTATTTGAAAACAACAATGTATTGG
TTTTGCGAACAGTTAAATGAAGAGGAAGCGGGATTTCTGATGTTTTGAAA
AATAGTCAGAAATCTAGTATCTTATCGGTTCCGGACGAATGTTCCGGCAT
GCGAATTATTGAGCATGCGCATAAAAGGGGANN Coding sequence (CDS) from alignment at sc0000059:100526..102058- >TCONS_00005752 ID=TCONS_00005752|Name=TCONS_00005752|organism=Clytia hemisphaerica|type=CDS|length=1848bp|location=Sequence derived from alignment at sc0000059:100526..102058- (Clytia hemisphaerica)
ATACTGGTATTGTCACCTTATGGACTGGTAGCTGTGCTGAAGGATTGTGT
CTTCCTATCGAAAATCACGGATACATCAATGTTAAATTTGACGTGGATCA
GATGCAAGTATTGGAGATTATACATCGAAATAAATGCTCCGATGAAACTC
AGCATATTCGTAGATGTTTTTATGTCAAGGCTAGTGATGATCATCCAGGC
TATTGCCATCTGTATTCATGTCACAGCGATCAAGAATTGACAAGCTCACG
AATGCGAGAAATGATACGAAATTTAGCGGATGATATTTTCCCCGGCGCTC
GTGCGAACAATGATCTCAGTACAGCTGTTACATTCAGTCAAAGAATGAAA
CCCGAATTTTATCATGCCTTACACATGGATACTGATGTTGTACTATGTTA
CAAACTAATTGAATGGCCTTTTGAAGCGAACGAGTGGTTGTCAAGGGAAC
GTATCAATAATTGGCCATCACCTGAAACAATTGCAGAAATAATTCGCGAT
GGATGTCACCTTGTTCCAAAACCACACCCACTTTCAAAACAAAACTATAC
AGAATGGAGGTATTCTTTTTCTGGGGCTGAACTTGCTCTTGGCTGGGCTT
TTACAGACGCCCAACTCTTTTGTTATATCGTTACCAAGGTCTTTTTTAAA
TTTGAGCAGCTTGTACATTCAGAATCTGTCTTGAAGACGTATTATTTGAA
AACAACAATGTATTGGTTTTGCGAACAGTTAAATGAAGAGGAAGCGGGAT
TTCTGATGTTTTGAATGGCTACTACAAGGATGATGCAAGAAGAAAAAACG
GACCCCATTTCTGGTTGTAATTTGACATATCTATCAATCGCATTCAAATA
CAATTTATACTATTGTCTTGGAAAGGCCAAAAAGACTCGTGCAGTGGTCA
GCAAACTTGATCATAGAGATTTAGATACTGGTATTGTCACCTTATGGACT
GGTAGCTGTGCTGAAGGATTGTGTCTTCCTATCGAAAATCACGGATACAT
CAATGTTAAATTTGACGTGGATCAGATGCAAGTATTGGAGATTATACATC
GAAATAAATGCTCCGATGAAACTCAGCATATTCGTAGATGTTTTTATGTC
AAGGCTAGTGATGATCATCCAGGCTATTGCCATCTGTATTCATGTCACAG
CGATCAAGAATTGACAAGCTCACGAATGCGAGAAATGATACGAAATTTAG
CGGATGATATTTTCCCCGGCGCTCGTGCGAACAATGATCTCAGTACAGCT
GTTACATTCAGTCAAAGAATGAAACCCGAATTTTATCATGCCTTACACAT
GGATACTGATGTTGTACTATGTTACAAACTAATTGAATGGCCTTTTGAAG
CGAACGAGTGGTTGTCAAGGGAACGTATCAATAATTGGCCATCACCTGAA
ACAATTGCAGAAATAATTCGCGATGGATGTCACCTTGTTCCAAAACCACA
CCCACTTTCAAAACAAAACTATACAGAATGGAGGTATTCTTTTTCTGGGG
CTGAACTTGCTCTTGGCTGGGCTTTTACAGACGCCCAACTCTTTTGTTAT
ATCGTTACCAAGGTCTTTTTTAAATTTGAGCAGCTTGTACATTCAGAATC
TGTCTTGAAGACGTATTATTTGAAAACAACAATGTATTGGTTTTGCGAAC
AGTTAAATGAAGAGGAAGCGGGATTTCTGATGTTTTGAATGGCTACTACA
AGGATGATGCAAGAAGAAAAAACGGACCCCATTTCTGGTTGTAATTTGAC
ATATCTATCAATCGCATTCAAATACAATTTATACTATTGTCTTGGAAAGG
CCAAAAAGACTCGTGCAGTGGTCAGCAAACTTGATCATAGAGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005752-exon-sc0000059-1575043694:101832..102058 | TCONS_00005752-exon-sc0000059-1575043694:101832..102058 | Clytia hemisphaerica | exon |
| TCONS_00005752-exon-sc0000059-1575043694:100526..101374 | TCONS_00005752-exon-sc0000059-1575043694:100526..101374 | Clytia hemisphaerica | exon |
| TCONS_00005752-exon-sc0000059-1510915933:101832..102058 | TCONS_00005752-exon-sc0000059-1510915933:101832..102058 | Clytia hemisphaerica | exon |
| TCONS_00005752-exon-sc0000059-1510915933:100526..101374 | TCONS_00005752-exon-sc0000059-1510915933:100526..101374 | Clytia hemisphaerica | exon |
| TCONS_00005752-exon-sc0000059-1491911889:101832..102058 | TCONS_00005752-exon-sc0000059-1491911889:101832..102058 | Clytia hemisphaerica | exon |
| TCONS_00005752-exon-sc0000059-1491911889:100526..101374 | TCONS_00005752-exon-sc0000059-1491911889:100526..101374 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:100526..102058 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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