TCONS_00005733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005733
Unique NameTCONS_00005733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2215

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005733 ID=TCONS_00005733|Name=TCONS_00005733|organism=Clytia hemisphaerica|type=transcript|length=2215bp
ATCCTTTCTATACTGACCACAAAGAAGTAAAGAGCTAATCTTCAAAAATT
TATCTACATTTATCATTCATCTAAATTTGTCTACAAaggcttcaaatttt
gacaacgCATTTCTCGAAAGTGAAGATACTCTGATTGACAGTTTACACAA
AATGGCTGACAGCAAAGctgataaaaatgaagaaaaggagACTGGAGAGA
CACAGACAGGGGATGCTTTCAAAACATACAAAGAAATTTGTGAAATCATT
TCCGACGAGCTTGGAGTGGACGATCCTGAATCCATTTCAGAGAAAGACTT
GGACGAGCTCGTGAAACTTGCTGGTAAAAAGCTGACCGAGGCTGATATCA
AGTTGTTCAATACAGTCCGAAAGAAGAATAAGATGTACAAAATGTTGGCC
GTTCCCGAATTACCAAAGACAAAAACACTGACAGCTCCTGATTTACAAAA
AATCGAATCCCTCGAACTAGATCAAAGATTGAAAGTCTTCAAAGgtgaaa
ttgacaaaaaagcTCAAGCACCCATTGATTTCTCATCAATGACAGCAGCT
GAGTGGGTAAAGGTAATCCTTAACTGCAACATGACATATGGTCGTGTTTT
TCGAAAACTTGGCAGTCCAGATGACCGTGCAGAACAGCCATTGTTCTTTC
CTCCAAACGAAAGGTTGTTTGGAACCCCTGATTTTATGGTTTCCCAAGTG
GCTTTATCTTTCTCCCAGAAATCTGAAAAGCTAGAAAATTTCAGTGATAA
GTCGGTCATGGCAAATCTAACCGTCGGGTCTTCATTTTCAACACCNAGAA
AATTTCAGTGATAAGTCAGTCATGGCAAATCTAACCGTCGGGTCTTCATT
TTCAACACCATGGGTAGCTGGAAGTGCTGAATATTCGCATGAAACTAAAA
ACAGAAGTGTCAATAAAGATTCCACCATCAAATCTGTCTTCAAAGTCGAA
GTTCCGATCGGCATATTCACCCTGCCGCATCCTTCAGAACTGGAAAACTC
AAAGATCAAGTTAAATGATGACTTCAGATCATTCATCAACAAATATCTCG
AAGAACATCCAGATTGTACTAAACAGAAGGTTCAAAGAGCAATAACTCAG
CGTTTCGGAGACATTGTACCAAGAAGTGTAAAGATTGGAGTGGCATGTTA
CACCACGCAAACCACAAAATTAGAAGAAAGTCAATCTCTTGAGGCTGTTT
CGGACTCCTTCGCAGCGAGCGTGACTGGCTCATATGGTCTTTTCAGTGCA
GGCGGACAAACCAGTGGTGGCAAAAGCACCTCAGATGAAAAAGGAAGCAA
ATCCCAAAAGAACACCTATGCATTTTCCGCTATCGCTGGCAGCCTCCCTG
ATCCAAACAACCCGATGTCAGTAGCTGATTATCGGGTCTTACCAAACAGT
TGGAGGATTATTGATTTCGGGAATGAATTTACTCCAGTCTTTGAGTACCT
TGGTGAAGATGTTAAGAAGCGGTTGGAGGGTCTTCCAAATGAAGTGGTTC
AAGAAAGCTTCAGATTTGTTGAGGCCAAGGCGAGCGATCATGTACCAGAG
AACGCAGTATCTGGTGGATTCGATGGAGGATGGTCATATCATGCCAGAGC
TTCTGTTAAAGATTTATTGATACCTGGAAAAGTTGGAGTTGATTCAAGTG
GACGACTCGTGACAGCTTGCATCCCATATGGTGGGGACGAACATCGTGTA
GAGTCATTCCAAATTGTAACATCCACAACCAAACTTAATTATCACGAAGC
AAAGAAGGGGGACAAACCGCCCCTCAATGCAATTGTGGGCGGATACGATG
GTGGGAATTCATACTTCGCGAAGGGGATTGTTGATGACGTTACGATCCCT
GGAAAGGTAGGTATAGATCAGAATGGAAAGTTCGTTGGTGCGTGTATCCC
TTACGGTGGCAAGGAACACAGAATCGATACATTTTGGGTACTACTCAATG
AATAAAACAATGATATTCATTCAAGAAACATTTTATCTTCGATTTTCTTA
CTTCCTATGTTTTTTATcttactttcatttttttgtaaacttaGAATATA
GACTTATAAATATATACAGAATatagacattttttttttcataagaacca
tGGTATATTTTGGTTGAGGCTCGgctattctttttttgttcgtgaTTTTC
AGCTTAAAactgttcttaacatgttcttaatacgcttaCTTTACCGGCCA
CCATCTTCAGCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00005733-protein

>TCONS_00005733-protein ID=TCONS_00005733-protein|Name=TCONS_00005733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MANLTVGSSFSTPWVAGSAEYSHETKNRSVNKDSTIKSVFKVEVPIGIFT
LPHPSELENSKIKLNDDFRSFINKYLEEHPDCTKQKVQRAITQRFGDIVP
RSVKIGVACYTTQTTKLEESQSLEAVSDSFAASVTGSYGLFSAGGQTSGG
KSTSDEKGSKSQKNTYAFSAIAGSLPDPNNPMSVADYRVLPNSWRIIDFG
NEFTPVFEYLGEDVKKRLEGLPNEVVQESFRFVEAKASDHVPENAVSGGF
DGGWSYHARASVKDLLIPGKVGVDSSGRLVTACIPYGGDEHRVESFQIVT
STTKLNYHEAKKGDKPPLNAIVGGYDGGNSYFAKGIVDDVTIPGKVGIDQ
NGKFVGACIPYGGKEHRIDTFWVLLNE
Run BLAST on NCBI

transcript from alignment at sc0000059:325491..339292+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005733 ID=TCONS_00005733|Name=TCONS_00005733|organism=Clytia hemisphaerica|type=transcript|length=13802bp|location=Sequence derived from alignment at sc0000059:325491..339292+ (Clytia hemisphaerica)
ATCCTTTCTATACTGACCACAAAGAAGTAAAGAGCTAATCTTCAAAAATT TATCTACATTTATCATTCATCTAAATTTATCTACAAaggcttcaaatttt gacaacgTATTTCTCGAAAAAGAAGGTAAGAAAATTCCTTACAataaatc aacatttttcacAAGCGAAATGAGTTATGTATTGATATCTTAATGTACCT ACGGGATAGTGGTTGCCCgggggggaggggtacttaggcaaatggagggt acggtatgtgccgcccttaagggtaccttttttggacttccaaagtcccg ctaagggNAAACGACTCAATAGAACCCTGTGTAAGCAAGTTCCCTTTGAA ACAATACATGAAATATCACACCATACAGAtacttttaattcttttttgaa acaATACATGAAACATCACATTAAACAATACTTTCAATCTCAACTTGAAA CGGACAAGAACAATATCTTATTTAATAACAAAAGGACTCGTCAACTTAGA GCCCATTTCCCCCGAACAAACATAGCAATTCATAACAATATCTTACCCAG ACCCTGACTGAAAATTCGAAACTCACGAGGAAGAAATATCCTTTCTATAC TGACCACAAACAAGTAAAGACCTAATCTTCAAAAATTTATCTACATTTAT CATTCATCTAAATTTGTCTACAAaggcttcaaattttgacaacgCATTTC TCGAAAGTGAAGGTAAGAAAATTCCTTACAATTAATCAACATTTTTCACA AGCGAAATGAGTTATATGTATTGATATCTTAATGTACCTATGGGATAGTG GTTGAGGTGGTACAGACATGAAATATGTCTATACCAAAGTAATACAATCC TAAGTACATGGTACCTCAACACTCATTTCACTGTCTatgtttttatacat ttttctgcaaaatattttcaaacacaGAATATCAAACACAGAATATCTCA CTTCACCACCTAACCTGAAATATCGAGCCTTTACTTGAACGTATTGAACT CATCCTACAACTACTTAATAGTTTTGATTTATATACTTCTCGTGAAGTAC TCCGCCTAAGATGCCAGTTTTGAAATCTTATCACTTCTAAAAAATTGAAC AATTGAATATAAATCACCCCTGTAtcacgaagcaaatgaaaattgcccca gagtcacggctttattagaaaatattcgaaaatcAACCCTTGGATAGATA TCCTCTATGTAtcacgaagcaaatgaaaattgccccagagtcacggcttt attagaaaatattcgaaaatcAACCCTTGGATAGATATCCTCTATGTAtc acgaagcaaatgaaaattgccccagagtcacggctttattagaaaatgtt cgaaaatcaaCACTTGGATAGAAATTACCCCAGCAAATCCCCAGAAAtca cgaagcaaatgaaaattgccccagagtcacgGCTTTATTGAAAAAGTTCA AACAAATCAATGCTCGTCGTGTCACGAATAATTAGAACTAAAATTAACCC AGAGTCACGGTCGGATAATGTTAATGAtggaaaagatttttgtgaaTTAT GTACCACTTGCATCACGAGTGAAAGAATCTGTCTCAGGGTCACGGCAAAA GGAATTGGAACTTTAGAGGTAAAGTAAATGTTTAATATACATGAAATGGA ATATTACCCTAGTATCAAGAGTCACCAGAGAACTAgacttaaaaaagaaa acacatgaattttcttctttatttctttGATATCACTTCAGTGCCagagc aactgggggggggctatgcccccaataattttttcaaaaatagttatttt acaaaatgccaagtttttcttttttaatttgtcataattgtcttaattga gtgcattttcaagcaatctagagctcaaattttcaaacccccccccctcg ggtCAAACCAAGGTGTCACAAGACTTCAGCCCCCTCAATATGAAAGTACT TCATGCACttaaataaatcaaattaatatttacattttataagaataaaa aattACCAATATAAATAGTTGCGATTTGTTTAAGTGAAGCAACCCCCGTC TCCCCTTTCCATCATTTATTCTAATCGAATTACAAGAAAATCGATCTGTT GCCCTATAGTCACGACTGTCCCCATTTTCACGCTACCCTATAGTAATGGA TGTGCTTGAACAACTGGTGGTTGCCATGCCATTTCAAGAATAAATGAAGC GTCATTTTTCTTGTCacaaataagttgtgttcgcgtcctccgaccgactc actttctatcttaaaaatccgacCCTTTTCTAGTcggaaagtcagaaaat ttgtcggattttttagcgatattattcaaagaattttgtaGATTCAGCGT TGTCAGCGTTTTTTGATCATCCTTaagtgtttttaagatttttatctgca atttttcaaagattgtttgcgTTAAAAGNNNNNNNNNNNNNNNNNcattt tataagaataaaaaattACCAATATAAATAGTTGCGATTTGTTTAAGTGA AGCAACCCCCGTCTCCCCTTTCCATCATTTATTctaaagagcttgtaaaa gagtttttatggtaaattGATTATGTGTtatgggtttccaaagttcagaa agtctgttcacacacagactgtttataacattctgtgtcagacaaATCTA CCtggagtctgctaaatcacgCCCCTCGCGCGCCTCACACGCCCTATATT TTGAACGCACCCATGCGCCTTAGTGCCCACGCGCCTCGCGCGCCTTGCTT TTTCACGCgcctttatttttttcacgCGCCCTTAACTTTTCACGCGCCCA TATTTTTCACGTGCCTTAATTTTTTTCACGCGCCCTTAAATTTCCACACG CCCATACTTTTCACGcgtcttattttttttcacgcGCCCTAAAATTTTCA CGCGCCCTTAAAATTTTCATGCACCCATATTTTTCACACGCTTATAATTT AATTGCTTTTTGGCCCATTCTCAcctagaaaacaaaaaaatgtacatCTC CTTTTTCTAAGTGTTGCGAATCAATAATATTTATATTCTAGATTTTAATC ttaagattttccaaaattttcggtTTTCCAAATTTATTCCATTTTCATAA GGGGGTTTTTGCTCCCTCTACAAACTTACTGTGTGATGAGTTTCCATCAT ttgtaaaaaatcaaatgaacaCATTGAGTACTCAAATTCTCTAGTATCTT TCAATAACTATAAGATAtatctaaataaaataaaaccacTTTATNAAAAT CAAATGAACACATTGAGTACTCAAATTCTCTAGTATCTTTCAATAACTAT AAGATATATctaaataaaatcaaaccaCTTTATCTTAAATGAATCtctaa ttgaaaaataattcgtcCTTTGGACGATCTCTGCTGTTAGCAgaggcacg gatttcgtggggtagaAATGCTTAATACCCCTAGTCTTGGGGAGAAAATG AGAAGTGTAAGAGAATTTGTCGTTTTCCCGAGGCTTTTCCCGAGACAATG TTATATTTGATAGAACCATTTATAAATAtgtacagtaaaacctctaatca acggacactctaaaaggcggaaacctctgattagcggacaatttcatttt ccccggccgtttcctagtcaaatcctcataaaaaagtttctaaaagacgg acactcaattagcggaccctctgattagcggataatttttttgcacgaaa tggccaaaacccctattttagctcttcAATTAGTGGACGTTGcatatcaa acgggtcacagacgcccaaaattgaaaaaaaaaatttagatatttttatt tcaagcacttattagtcttattattcaagttttttctacaaatttccagt tttcccttgacccattcaacgaatttaggtgggccaaagaaatcataaat cactggtacTTCAAGTCCGTACCCACCACCTCGGTTTAACCTCTTGCCAG TCACTCGAgctcttctatggcctagtgtctgcagataagtactttagacc ccaattttgtattttccacACCCTGGGATTgcttaatttcaaaattggag ctccgagatcaaaagtttctaaaaggcggacacttctaattagcggacac taacccctttccccgatggtttCCGCTAAtaagaggttccactgtatgtG TTTTAAAACTAAGTCCTATATCAAATTAAGGAGATAATCTGTGCCAGCTG CTATTTGCCATATATAACTCAATTTTAAGGCGCGTGAAAAATATAGGCGC GTGAAAATTTAAGGGCGcgtgaaaaaaataaaggcGCGTGAAAAACATTT GCGCGAGAACATTTAAGGGCGCGTGAAAAAATTAAGGCGTGTGAAAAATA TGGGCGCGTGAAAAAGGAAGGCGCGTGAGGNGAAAAACATAGGCGCGTGG GCactaaggcgcgtgggcgcatTCAAAATATAGGGCGCGTGAGGCGcgtg atttagcagactcatcTACCTGCAgcaagctctataatcttagaactttg tgaagtgaggtattttttgtttttttctagcCCACACTATTCATATCATT TTTGGATGACAAGAGAAGAATGCACgataatattttcttttcaaatgttt tcttaCAAATCATATGAATAGTTTTGGGCTATTCAtcattttattacaag tttCGTTAATTCTGAAAGCTTAAGGCAtcagtggaaaaacaccctatgtt atgattctctatcgctGACACTTTTTTAAAAGCGTTGATGACTTTTTTGA GTTGTATTTTCGGGTGTGTTTACACTGCAAGTTTCAGTGATCATGCAATC GTGCAAACTCAGATAATGAAAAACAAAGGAGAGGATCGTGCACTTCTTTG TTCTCATATTTTCAAGCAACTTTCAAGCAATAGTGTGAACACGCCCTTCA ACGACGCGAATAAAAGTATAAACTTTGAACTTAGtacaagatcttggatt gtcgtcgtggttacttttctttgcgttgattgcgcgctgattGGTCGTCa caggtcgatatatgatttcggaACGTGATTTTCACGGTATGAATTATCGG TAATTCTTCATCataattaagggctctgaccatagtgaatttttcataat tgccgtgtttaaaatgtgttttctgactgatgtaaccaacaaaactatga catGCTATagattttctgttagacaaactattcctgaatctgaaaattca aaaactgcattgaaaaaatttgatgaagaagaaaatgaagacttttgcga ggaagagtatttcaactttgaagagcttagtttcggcgaagaaaaaacat tttgaaaattttttcgcagtaaatggtgtatcttttactgaacaataaaa tcttttgcggaaaatttttgtaaatgcttctttgtctcgaaatcttcaaa atagtggtttttcatcaatttttcatctggattttgcttaaaaaaacagt tatANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaa cttttgacacatctttttagaaaaattttccgcaaaatttaaaatagttc aattctttgcggacagtttgaaaaaagttcgaagcaaaaaggttaattac ccattaaaacttagcactttttctaaaagaaggtgatgatgcaacatatt attaacgtctttttaaagttcataacgtcatttttgcaattaagttctta attactcttaaggggtttgactAAAAAGCAATTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNttctgactatggtcagagcccttaaatgtgAGTTCAAAAaggtaaat ttgaattttttgtctgTAAACGTCAACATAATACTTGTTTGTCTTCTTTA TTACGCATTTAGACAggatcaaaaagaaaatgaatatattttgCATCAGT GAATTTTCCCCTGTACCAGTTCCCCGGTGAAAAGCCATTCACCTAGAGAG AAAAATGTGAACTTTAAATCCTTGGAGAAAAACTACCTTTTGAAACACTA TCAGATTTCCATCTGCAAGATAGATTTTTTGACTTCACTTCAGCTAAAGG TTTACAAGgcatcttttgattttttgatgctATCAAATCATTGACACAAA AAGGTGAAATAGTAATTGACCTTTTTCGTCACTGAAATTTCGCTGACGTA TAGTAACCAATTTCACTTTCCTTCTAGATACTCTGATTGACAGTTTACAC AAAATGGCTGACAGCAAAGGTAAGGCTACCAagttttttcaatatatttt ggctggaactaattttttactattttttcagTCTGGAAATACCAGTGTAG TGTAAAGAAGGTTTCAAACTTCATTTGATGAAAGCACCCCTTTgcagcgg acccaaaattcacaccatcacgccacgaaaaaccctctaTCACGCCTTTA CGCCAACCAGAGAGGAGGGCCTTTGAAGCTTTTTCTTAAGTTTAAGCCGT GGCTGAATGTGATTTCGCGGCTTAAAGGCTCTGatcatagtgaatttttc atatttttacatgtaaaaaatGTAGATTTTTGCCTGAAGTAgccaacaaa actatgacatgttatacatgTTCTGTTAGGGCAATTATTCTTGATTCcga aaattcaaaagtcaagatgaaaataattgatgaagaagaagatgactTTT GCAAAggagagtatttcaactttgaggaccttattttcggcgaagaaaat acattttttaataattttagaTTAGCGGTAGATTGTGTATCTTCTTTAGa tgaattaaaaataaattttcggaaaatttttgtaaaaacaactttcttgt ctcaagctcttgaaaatagtggtttttacgaaatttttcatccgaaattt tctttaagaaataaTCATAGCTTTTGACAAATTAATTTAGAAACATTTTC CGAAAAGTttcaaatagttcaattctttgcagacaatttaaagaaagttc gaaacaaaaaggttaattacccattaaaactaagctaTTTTTGTTACGTC TTTTTatgattaaatttttaattactctCAACAAAATAAATTAACAAACA ACTTATGAATGCTGTTTTTTGGTAAAAGTGTCAAGGAACTTAAAACacaa gttttatcttcaaatttcttaaaaCCGATTTTCTAtctttcagctgataa aaatgaagaaaaggagACTGGAGAGACACAGACAGGGGATGCTTTCAAAA CATACAAAGAAATTTGTGAAATCATTTCCGACGAGCTTGGAGTGGACGAT CCTGAATCCATTTCAGAGAAAGACTTGGACGAGCTCGTGAAACTTGCTGG TAAAAAGCTGACCGAGGCTGATATCAAGTTGTTCAATACAGTCCGAAAGA AGAATAAGATGTACAAAATGTTGGCCGTTCCCGAATTACCAAAGACAAAA ACACTGACAGCTCCTGATTTACAAAAAATCGAATCCCTCGAACTAGATCA AAGATTGAAAGTCTTCAAAGgtgaaattgacaaaaaagcTCAAGCACCCA TTGATTTCTCATCAATGACAGCAGCTGAGTGGGTAAAGGTAATCCTTAAC TGCAACATGACATATGGTCGTGTTTTTCGAAAACTTGGCAGTCCAGATGA CCGTGCAGAACAGCCATTGTTCTTTCCTCCAAACGAAAGGTTGTTTGGAA CCCCTGATTTTATGGTTTCCCAAGTGGCTTTATCTTTCTCCCAGAAATCT GAAAAGCTAGAAAATTTCAGTGATAAGTCGGTCATGGCAAATCTAACCGT CGGGTCTTCATTTTCAACACCNAGAAAATTTCAGTGATAAGTCAGTCATG GCAAATCTAACCGTCGGGTCTTCATTTTCAACACCATGGGTAGCTGGAAG TGCTGAATATTCGCATGAAACTAAAAACAGAAGTGTCAATAAAGATTCCA CCATCAAATCTGTCTTCAAAGTCGAAGTTCCGATCGGCATATTCACCCTG CCGCATCCTTCAGAACTGGAAAACTCAAAGATCAAGTTAAATGATGACTT CAGATCATTCATCAACAAATATCTCGAAGAACATCCAGATTGTACTAAAC AGAAGGTTCAAAGAGCAATAACTCAGCGTTTCGGAGACATTGTACCAAGA AGTGTAAAGATTGGAGTGGCATGTTACACCACGCAAACCACAAAATTAGA AGAAAGTCAATCTCTTGAGGCTGTTTCGGACTCCTTCGCAGCGAGCGTGA CTGGCTCATATGGTCTTTTCAGTGCAGGCGGACAAACCAGTGGTGGCAAA AGCACCTCAGATGAAAAAGGAAGCAAATCCCAAAAGAACACCTATGCATT TTCCGCTATCGCTGGCAGCCTCCCTGATCCAAACAACCCGATGTCAGTAG CTGATTATCGGGTCTTACCAAACAGTTGGAGGATTATTGATTTCGGGAAT GAATTTACTCCAGTCTTTGAGTACCTTGGTGAAGATGTTAAGAAGCGGTT GGAGGGTAagagaaatgtttttcttttctttttttttacttttcctctTC TCTTTGACGAATATCTTGCCAATTTATTTGACCTCTAGAAAGGTTATATT TCTCCATTGGTCCTTGTTTCCTGCGGGGAGAATGGAGTGCAACACAATAA CCGTAAGTGTCACtttaaaaataatgaaacaTTGTttaaatacactcttc tcgagatgcaaaAAAGGCCTCGTTTTTAATTATTGTTGCCTATGTAACTC AACATCAGCATCACTCGACATGTAATTATTGTTTGTGAACGTTTacactt ttgtttttaaaactgaaaactgccttttgtttaatgtttattacgaaaaa gaaaagtgaaCTCTGATTCTAATTTCGAAAATAATCTTCCTCTCCATTTG AATATCTGAATAATGTAGAGTCAcctttgaaagtttcaaaatatagcaaa tttagaaaaataacgGATTACTCAAAACTTCTTGTGGAGAAATGCGTTTT CTGCACTCTATTGTTAAATTTTGTATTCGTCATGGGTACTAATCAGGGGG TAAGGATTATAAAAAACATCATATTTTAGGCTAGCGAATCCAAAACATAT CCCCCGGAAAAAGTTATACGAAAtctaaaatcgctagcgaaaatcTAAAC GCTGTAGAAAAAGGCTTCAGACACGTATGGGTATCATTATATAGATGTCA CTTTTCTTCTTTACAGGTCTTCCAAATGAAGTGGTTCAAGAAAGCTTCAG GTAATGAGATATTATTTTACTCACGTCAAACTAATTTTGATATACAGAGC TTAGACATGAGAGCGCAATGATCCAAATCATTATGGGTCATATCTTAAAT TCTAAACAAGACAAGAAGCCCGttaggcgtgaaggcccagcaaaagcgaa atttacgcgattttcgcgaatttcgggatttccaaaaattccaaaaaatg tttaacaagatttcaggaaagggatgtccaaaggatttaaaattttactg cgtcGAGCAAAACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTAACA GCTTCTTTGTTtaggtaaacaaacccaaaccatttgcagtttagtgaaac agtttcagttttttggttttgaacattaaaaggtatgcaaccttagtctc cattgccatatgccatattccatttaatcggtatttgaaataattctgtg tcaagtttgaaaaatcaagccaggaagccaccaattcgttgaacgagaga gatctagaaatatataaccattttcacacgtagcatcatggaaaaatgTC CAatattgttcaaatttacacatgagctgcattttagtctccattgccat attccattttaaaaatcggtatatatttgaaataattccgtgtcgagttt gaaaaatcaagccaccaattcgttaaacgagacagatctagaaatatata accattttcacacgtagcatcatNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNccatattccatttaatcggtatttgaaataattccgtgtcgagtttg aaaaatcaagccaccaattcgttaaacgagacagatctagaaataaccat ttttacacgtagcatcatggagaAAGTTCCAACCCTGTTCTAATTTACAC Atgaactccattttagtgttcatcagcaaattccagaatcaagtcttttt gaaaacaagaaactaaaagtgaaagtgatttaaggtatagaattttcact cagaaagctttatgaaaactataacatatgacagaatgttgaaaaagttt acaaagaaaaatcactacaaattttctttggtttgaaagtctcttgacca ctaaagcaaagaaaatgttcaagaaagtatgaatcaacaccAGAACACAT GAAATCAATCTCCTCGCTtcaaccgccatcttgttttgttttgaaaacgt ttgttgtttaaggagcgcggaatcagaaaatatatcttttttagccagta cccgactttcgcaagcttttccctaccagacggcaaaaagtgtgttactg gtattaagcgccgtttctaccaaaacggacagacagaaggaaacacggaa aaaaatagtgacactctctttaaaggcccactcgctagcgctgggccaat aaagCTATATGTAATATAATTTATTGCAAGCACCACCCAATCCCGGCGCC CACTTCACCCACATCACACTCACAATATACAGACCACTCGTTCATAATCT GTCTATTGTCAAGTCAATTTTATGGTGTTATTTTTAGATTTGTTGAGGCC AAGGCGAGCGATCATGTACCAGAGAACGCAGTATCTGGTGGATTCGATGG AGGATGGTCATATCATGCCAGAGCTTCTGTTAAAGATTTATTGATACCTG GAAAAGTTGGAGTTGATTCAAGTGGACGACTCGTGACAGCTTGCATCCCA TATGGTAAATGTTTATAATATACCTTGTGTTAAGTCGTATAGGGTGACCA AGGGCCTACAATCAAAGctataatatttgagaaaaaggagAATTGCctgc aaaattttagaaaccacaaattatttttgagtgCTTTAATTAACTTTGGG AATGCAGAGTTTTAACATTAAATTTAAGActtagaatatagcctggaagg cactaaacccctcccaaatcgaattATCCGATGAAATAAAGTTGAAGTAC TAAAATCGACAAAAAATACCACCAAAAGTCTCATTATATTTCGACACTGA TTGTAAGAATTTTGCCTCTCTCAGCCAAAAGTTTCCGAATTCGATATAAT AgtagtgtgcaaaatttcagagttaaaaaacaactttctgTTTTTTATGC TGAGCTTCCTTCCACACTTGTACTTgataatgaaattgaaaattttcatt ttaagagTCATAATGCCCAAATCGcccaaaaaatcatattttgatGAACG CATGTCAGAAAGCCGTATTTTATCCGTTTTCCTCTCTCGTCCCGTGCCTG TTATGTCTATCACAACTCTTGGAAAGTCGAGCTGTGTAGAGTGTAGAGCT TTTTTAGAATTTGAACTATAATGTTGGACATAATATAATATATagttttt ttcttgtttctgGTGGGTGGATAACTTAGGCCCAACCCCTTTTACCCCCA GTTCAATGCTGGATAAGACTTGGTAAACAATAGCAAGCTTTTCCCACCCA TCAACATTGATTTTGGGGGTGGAGGGGGCTGGGATTTTTTATAAGgtttt tgccaaatattttgtccaacATTGTAGCTCAATTCACAGATATCTTACAG CATTAGCTAATCTCTCTTTCTGAAGCCATGGTAGTTGAAGCAAAATTATG CGCCATCTTTGCTTAGAAGACCATAGTAATAAACAACAGTTCAGTACCAG CAACTTTTTTAAACAGAACAAACAAGTGACATGGTGGGAAACTAAGAGGC GAGGGAATGGACTTCATTGGTCAAATTTTCGGGACCGAACAGGGGTCTAC TTATTTGTTTACTtagtgttttttatataagatatctatggCTCCACTAA GTGACATTACATTAATCCATCTCAATGCAATGATGTctttttgttgttat ttttccCAAAAGAGCATTCCTACGCGCctgtttttcaattatttttacac CAAAAAATTGACTTTAGGTGGGGACGAACATCGTGTAGAGTCATTCCAAA TTGTAACATCCACAACCAAACTTAATTATCACGAAGCAAAGAAGGGGGAC AAACCGCCCCTCAATGCAATTGTGGGCGGATACGATGGTGGGAATTCATA CTTCGCGAAGGGGATTGTTGATGACGTTACGATCCCTGGAAAGGTAGGTA TAGATCAGAATGGAAAGTTCGTTGGTGCGTGTATCCCTTACGGTGGCAAG GAACACAGAATCGATACATTTTGGGTACTACTCAATGAATAAAACAATGA TATTCATTCAAGAAACATTTTATCTTCGATTTTCTTACTTCCTATGTTTT TTATcttactttcatttttttgtaaacttaGAATATAGACTTATAAATAT ATACAGAATatagacattttttttttcataagaaccatGGTATATTTTGG TTGAGGCTCGgctattctttttttgttcgtgaTTTTCAGCTTAAAactgt tcttaacatgttcttaatacgcttaCTTTACCGGCCACCATCTTCAGCAA AT

Coding sequence (CDS) from alignment at sc0000059:325491..339292+

>TCONS_00005733 ID=TCONS_00005733|Name=TCONS_00005733|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0000059:325491..339292+ (Clytia hemisphaerica)
ATGGCAAATCTAACCGTCGGGTCTTCATTTTCAACACCATGGGTAGCTGG
AAGTGCTGAATATTCGCATGAAACTAAAAACAGAAGTGTCAATAAAGATT
CCACCATCAAATCTGTCTTCAAAGTCGAAGTTCCGATCGGCATATTCACC
CTGCCGCATCCTTCAGAACTGGAAAACTCAAAGATCAAGTTAAATGATGA
CTTCAGATCATTCATCAACAAATATCTCGAAGAACATCCAGATTGTACTA
AACAGAAGGTTCAAAGAGCAATAACTCAGCGTTTCGGAGACATTGTACCA
AGAAGTGTAAAGATTGGAGTGGCATGTTACACCACGCAAACCACAAAATT
AGAAGAAAGTCAATCTCTTGAGGCTGTTTCGGACTCCTTCGCAGCGAGCG
TGACTGGCTCATATGGTCTTTTCAGTGCAGGCGGACAAACCAGTGGTGGC
AAAAGCACCTCAGATGAAAAAGGAAGCAAATCCCAAAAGAACACCTATGC
ATTTTCCGCTATCGCTGGCAGCCTCCCTGATCCAAACAACCCGATGTCAG
TAGCTGATTATCGGGTCTTACCAAACAGTTGGAGGATTATTGATTTCGGG
AATGAATTTACTCCAGTCTTTGAGTACCTTGGTGAAGATGTTAAGAAGCG
GTTGGAGGGTCTTCCAAATGAAGTGGTTCAAGAAAGCTTCAGATTTGTTG
AGGCCAAGGCGAGCGATCATGTACCAGAGAACGCAGTATCTGGTGGATTC
GATGGAGGATGGTCATATCATGCCAGAGCTTCTGTTAAAGATTTATTGAT
ACCTGGAAAAGTTGGAGTTGATTCAAGTGGACGACTCGTGACAGCTTGCA
TCCCATATGGTGGGGACGAACATCGTGTAGAGTCATTCCAAATTGTAACA
TCCACAACCAAACTTAATTATCACGAAGCAAAGAAGGGGGACAAACCGCC
CCTCAATGCAATTGTGGGCGGATACGATGGTGGGAATTCATACTTCGCGA
AGGGGATTGTTGATGACGTTACGATCCCTGGAAAGGTAGGTATAGATCAG
AATGGAAAGTTCGTTGGTGCGTGTATCCCTTACGGTGGCAAGGAACACAG
AATCGATACATTTTGGGTACTACTCAATGAATAAATGGCAAATCTAACCG
TCGGGTCTTCATTTTCAACACCATGGGTAGCTGGAAGTGCTGAATATTCG
CATGAAACTAAAAACAGAAGTGTCAATAAAGATTCCACCATCAAATCTGT
CTTCAAAGTCGAAGTTCCGATCGGCATATTCACCCTGCCGCATCCTTCAG
AACTGGAAAACTCAAAGATCAAGTTAAATGATGACTTCAGATCATTCATC
AACAAATATCTCGAAGAACATCCAGATTGTACTAAACAGAAGGTTCAAAG
AGCAATAACTCAGCGTTTCGGAGACATTGTACCAAGAAGTGTAAAGATTG
GAGTGGCATGTTACACCACGCAAACCACAAAATTAGAAGAAAGTCAATCT
CTTGAGGCTGTTTCGGACTCCTTCGCAGCGAGCGTGACTGGCTCATATGG
TCTTTTCAGTGCAGGCGGACAAACCAGTGGTGGCAAAAGCACCTCAGATG
AAAAAGGAAGCAAATCCCAAAAGAACACCTATGCATTTTCCGCTATCGCT
GGCAGCCTCCCTGATCCAAACAACCCGATGTCAGTAGCTGATTATCGGGT
CTTACCAAACAGTTGGAGGATTATTGATTTCGGGAATGAATTTACTCCAG
TCTTTGAGTACCTTGGTGAAGATGTTAAGAAGCGGTTGGAGGGTCTTCCA
AATGAAGTGGTTCAAGAAAGCTTCAGATTTGTTGAGGCCAAGGCGAGCGA
TCATGTACCAGAGAACGCAGTATCTGGTGGATTCGATGGAGGATGGTCAT
ATCATGCCAGAGCTTCTGTTAAAGATTTATTGATACCTGGAAAAGTTGGA
GTTGATTCAAGTGGACGACTCGTGACAGCTTGCATCCCATATGGTGGGGA
CGAACATCGTGTAGAGTCATTCCAAATTGTAACATCCACAACCAAACTTA
ATTATCACGAAGCAAAGAAGGGGGACAAACCGCCCCTCAATGCAATTGTG
GGCGGATACGATGGTGGGAATTCATACTTCGCGAAGGGGATTGTTGATGA
CGTTACGATCCCTGGAAAGGTAGGTATAGATCAGAATGGAAAGTTCGTTG
GTGCGTGTATCCCTTACGGTGGCAAGGAACACAGAATCGATACATTTTGG
GTACTACTCAATGAATAAATGGCAAATCTAACCGTCGGGTCTTCATTTTC
AACACCATGGGTAGCTGGAAGTGCTGAATATTCGCATGAAACTAAAAACA
GAAGTGTCAATAAAGATTCCACCATCAAATCTGTCTTCAAAGTCGAAGTT
CCGATCGGCATATTCACCCTGCCGCATCCTTCAGAACTGGAAAACTCAAA
GATCAAGTTAAATGATGACTTCAGATCATTCATCAACAAATATCTCGAAG
AACATCCAGATTGTACTAAACAGAAGGTTCAAAGAGCAATAACTCAGCGT
TTCGGAGACATTGTACCAAGAAGTGTAAAGATTGGAGTGGCATGTTACAC
CACGCAAACCACAAAATTAGAAGAAAGTCAATCTCTTGAGGCTGTTTCGG
ACTCCTTCGCAGCGAGCGTGACTGGCTCATATGGTCTTTTCAGTGCAGGC
GGACAAACCAGTGGTGGCAAAAGCACCTCAGATGAAAAAGGAAGCAAATC
CCAAAAGAACACCTATGCATTTTCCGCTATCGCTGGCAGCCTCCCTGATC
CAAACAACCCGATGTCAGTAGCTGATTATCGGGTCTTACCAAACAGTTGG
AGGATTATTGATTTCGGGAATGAATTTACTCCAGTCTTTGAGTACCTTGG
TGAAGATGTTAAGAAGCGGTTGGAGGGTCTTCCAAATGAAGTGGTTCAAG
AAAGCTTCAGATTTGTTGAGGCCAAGGCGAGCGATCATGTACCAGAGAAC
GCAGTATCTGGTGGATTCGATGGAGGATGGTCATATCATGCCAGAGCTTC
TGTTAAAGATTTATTGATACCTGGAAAAGTTGGAGTTGATTCAAGTGGAC
GACTCGTGACAGCTTGCATCCCATATGGTGGGGACGAACATCGTGTAGAG
TCATTCCAAATTGTAACATCCACAACCAAACTTAATTATCACGAAGCAAA
GAAGGGGGACAAACCGCCCCTCAATGCAATTGTGGGCGGATACGATGGTG
GGAATTCATACTTCGCGAAGGGGATTGTTGATGACGTTACGATCCCTGGA
AAGGTAGGTATAGATCAGAATGGAAAGTTCGTTGGTGCGTGTATCCCTTA
CGGTGGCAAGGAACACAGAATCGATACATTTTGGGTACTACTCAATGAAT
AAATGGCAAATCTAACCGTCGGGTCTTCATTTTCAACACCATGGGTAGCT
GGAAGTGCTGAATATTCGCATGAAACTAAAAACAGAAGTGTCAATAAAGA
TTCCACCATCAAATCTGTCTTCAAAGTCGAAGTTCCGATCGGCATATTCA
CCCTGCCGCATCCTTCAGAACTGGAAAACTCAAAGATCAAGTTAAATGAT
GACTTCAGATCATTCATCAACAAATATCTCGAAGAACATCCAGATTGTAC
TAAACAGAAGGTTCAAAGAGCAATAACTCAGCGTTTCGGAGACATTGTAC
CAAGAAGTGTAAAGATTGGAGTGGCATGTTACACCACGCAAACCACAAAA
TTAGAAGAAAGTCAATCTCTTGAGGCTGTTTCGGACTCCTTCGCAGCGAG
CGTGACTGGCTCATATGGTCTTTTCAGTGCAGGCGGACAAACCAGTGGTG
GCAAAAGCACCTCAGATGAAAAAGGAAGCAAATCCCAAAAGAACACCTAT
GCATTTTCCGCTATCGCTGGCAGCCTCCCTGATCCAAACAACCCGATGTC
AGTAGCTGATTATCGGGTCTTACCAAACAGTTGGAGGATTATTGATTTCG
GGAATGAATTTACTCCAGTCTTTGAGTACCTTGGTGAAGATGTTAAGAAG
CGGTTGGAGGGTCTTCCAAATGAAGTGGTTCAAGAAAGCTTCAGATTTGT
TGAGGCCAAGGCGAGCGATCATGTACCAGAGAACGCAGTATCTGGTGGAT
TCGATGGAGGATGGTCATATCATGCCAGAGCTTCTGTTAAAGATTTATTG
ATACCTGGAAAAGTTGGAGTTGATTCAAGTGGACGACTCGTGACAGCTTG
CATCCCATATGGTGGGGACGAACATCGTGTAGAGTCATTCCAAATTGTAA
CATCCACAACCAAACTTAATTATCACGAAGCAAAGAAGGGGGACAAACCG
CCCCTCAATGCAATTGTGGGCGGATACGATGGTGGGAATTCATACTTCGC
GAAGGGGATTGTTGATGACGTTACGATCCCTGGAAAGGTAGGTATAGATC
AGAATGGAAAGTTCGTTGGTGCGTGTATCCCTTACGGTGGCAAGGAACAC
AGAATCGATACATTTTGGGTACTACTCAATGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003252XLOC_003252Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005733-exon-sc0000059-1491911889:325491..325547TCONS_00005733-exon-sc0000059-1491911889:325491..325547Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1510915933:325491..325547TCONS_00005733-exon-sc0000059-1510915933:325491..325547Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1575043694:325491..325547TCONS_00005733-exon-sc0000059-1575043694:325491..325547Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1491911889:326135..326202TCONS_00005733-exon-sc0000059-1491911889:326135..326202Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1510915933:326135..326202TCONS_00005733-exon-sc0000059-1510915933:326135..326202Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1575043694:326135..326202TCONS_00005733-exon-sc0000059-1575043694:326135..326202Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1491911889:331968..332009TCONS_00005733-exon-sc0000059-1491911889:331968..332009Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1510915933:331968..332009TCONS_00005733-exon-sc0000059-1510915933:331968..332009Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1575043694:331968..332009TCONS_00005733-exon-sc0000059-1575043694:331968..332009Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1491911889:332934..334245TCONS_00005733-exon-sc0000059-1491911889:332934..334245Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1510915933:332934..334245TCONS_00005733-exon-sc0000059-1510915933:332934..334245Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1575043694:332934..334245TCONS_00005733-exon-sc0000059-1575043694:332934..334245Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1491911889:334957..334990TCONS_00005733-exon-sc0000059-1491911889:334957..334990Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1510915933:334957..334990TCONS_00005733-exon-sc0000059-1510915933:334957..334990Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1575043694:334957..334990TCONS_00005733-exon-sc0000059-1575043694:334957..334990Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1491911889:337378..337544TCONS_00005733-exon-sc0000059-1491911889:337378..337544Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1510915933:337378..337544TCONS_00005733-exon-sc0000059-1510915933:337378..337544Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1575043694:337378..337544TCONS_00005733-exon-sc0000059-1575043694:337378..337544Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1491911889:338758..339292TCONS_00005733-exon-sc0000059-1491911889:338758..339292Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1510915933:338758..339292TCONS_00005733-exon-sc0000059-1510915933:338758..339292Clytia hemisphaericaexon
TCONS_00005733-exon-sc0000059-1575043694:338758..339292TCONS_00005733-exon-sc0000059-1575043694:338758..339292Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005733-proteinTCONS_00005733-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:325491..339292 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 1.18985e-06 0 0 8.55913e-09 4.40921e-08 0.018664 5.748e-06 1.55254 4.36954 0.734186 2.41227e-05 2.04781e-06 4.05243e-07 0 0 68.3761 45.9799 4.82216e-05 2.04602 5.70594 30.9286 2.77785 1.09211e-05 0.000522231 0.00374042 5.29039e-08 6.45671e-05 1.12722 5.51964e-05
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006616DM9_repeat
IPR024518DUF3421
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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