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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005732 ID=TCONS_00005732|Name=TCONS_00005732|organism=Clytia hemisphaerica|type=transcript|length=1784bp
CTGATCTCCGAGAAAGACTATGATAGTAGTGAAAGATGTCGCGGAACTTA
CTTGGAAATTGGCaacaaaaacgaaagaaaaaattaaaacgaGCCAATCA
GAACAAAGGAAAATACAACGCAAGCCAATCATGATGGATGACAGTAGTGA
TGATGAACGAGAATCATTGGCTGGTGAAAGGTCACATGACCCATCAACAG
TCTTCGCAACAATGATTAAATTTGATTTCAATTACATCACCAAGACATGG
ATAGGACGTGTCAAATTAGCTCAGCTCATTTGCTGCATATTAGCAGGTTG
TATTCTCCCAACAACAATAGCGTTCTATTTCACACGTTTCTCATTCTACA
CCTTCGTCATCTGGACATGTTTCATGTACATCTTTATCGATCTCCTCATC
CACGTGACCAGCATCGCAAAATTGGCGCCCGACTTTTGCCGGACCACCGA
TATCATGATGTATCCGTTATTTATCGGTGCGTTAACACTTCTCTTGAGTG
CTTCATTAGTGGCTAGCGTAACTGACATTCATCATGGTAGCCGAGCAACG
CGCATtggattttcagcattttttggatTGATCCTAATGGCCTTATTCTT
GTTTGAAGCCTTTTTACAGTACCGTCGAGCACGTAACAACGGTGTAGAGC
CACCTTTGTTTAGTTTCTCATTGCCAGGAAGAAGAGCACCCACTACTGAT
ATTGACGCTGAGAACGGAAACATTCCCGCTGGACGAAATATTGTAATTTC
AAGACCGACATCCCTTAGGGCCGTCGAGGAACAACCACCACCTTATAGTA
AGGGAATGGAAGGGGCGGACAAAGGTGGCGTCGCTGTGCCCCTTGGATCT
TATGGTGGACAGTAAACTTTCCAATAATTATTTGCGTGATCTCATCAAAC
AGTACCTTACATAGGAAAtgcagaaaaaattattttcaatagagcaaaat
atgttttaaggtattaaatcaaatataaacttgtacagatttttttcgaa
gattcgTATTCGTGTAATATTTACGTATTCACAATTTGGACAAattgtca
acaacaacaatTTTAGTAGAAAAGATGATTCTTTAAAAGCAATTTAGTTA
CCCATTATAGGATATTATGATAATACCACGTAAtggactcttccagaaaa
aaattgaaaatggggAGGGGAGGTGGAGGATATTTGAATATTTGGaaatt
tgccccccccccacggacattttgacttttgacccccgggCAGCAGGTAT
AACCcaccggacaagcatcagttgacccctggacattcaaaagtaccctc
aaacagagcaatgTTACCCAAAAATAGAGTATTTTTACCCCccagacaag
gcaaattttgtagattttttactACCCCCCGGATACTTTATCCTCCACCt
tccatgtacggacattttttAGAAGAGCCCAATATGACCCTTttgtaaag
tatttttttgaatGTATAGAATTTTTGTATCATAGTTTGAAATTACAGCC
TTAGCGTAAatataaattcaatttttcttaaaaactaattgagatatatt
tttcaagCCCTGCTAAGGCTAATAAAGTCCCCAAAATAGCATCATTGGAC
ACCAATATCCAATAAAGTAACCCCCTGTTACCGACACAGTTAAAAGGATT
GAGTTTTTCTGATCAGAAATTTGTATGGTGTATGGTTTACAAATTGTACA
CCAGTCGACGCAGAATTTCATGTAGATTCCAAATATGCAATAACAACTTT
TGTTTTAAGTTATGAACTTTGACCCTCTACTGCG Run BLAST on NCBI protein sequence of TCONS_00005732-protein >TCONS_00005732-protein ID=TCONS_00005732-protein|Name=TCONS_00005732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MIVVKDVAELTWKLATKTKEKIKTSQSEQRKIQRKPIMMDDSSDDERESL
AGERSHDPSTVFATMIKFDFNYITKTWIGRVKLAQLICCILAGCILPTTI
AFYFTRFSFYTFVIWTCFMYIFIDLLIHVTSIAKLAPDFCRTTDIMMYPL
FIGALTLLLSASLVASVTDIHHGSRATRIGFSAFFGLILMALFLFEAFLQ
YRRARNNGVEPPLFSFSLPGRRAPTTDIDAENGNIPAGRNIVISRPTSLR
AVEEQPPPYSKGMEGADKGGVAVPLGSYGGQ Run BLAST on NCBI transcript from alignment at sc0000059:314757..319616+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005732 ID=TCONS_00005732|Name=TCONS_00005732|organism=Clytia hemisphaerica|type=transcript|length=4860bp|location=Sequence derived from alignment at sc0000059:314757..319616+ (Clytia hemisphaerica)
CTGATCTCCGAGAAAGACTATGATAGTAGTGAAAGATGTCGCGGAACTTA
CTTGGAAATTGGCGTAAGGAATATTAGAAAacatagtttttttttcttct
tctttcttagatAATTTGTATGCAAAGCCGTTTCTTTTTGCTAGGTTTTT
ATATGACAAATTTCTCTAACGAAAATGAGCGATAAATAGAAAAAGATGTT
TGGTAATGGAATGAATCCGATCTCTTTTTCCAGTAAAACTCCGGGGGGTT
ACTAAGTTTGTGAGGTGACGGGTATACCAAATTACCAAATTTTATGACTC
TTTGACAGGGTTGACTTTTGATATTTCGTTTAATATCATATATTCACATC
CTTGAAAGTCTCTCATaaagggtacaaaaaccattaaaaagcaaagaGTC
TCTTAAAGGGTCCTTAGTACCCTCGGGCTTATTAAGGTATATACTTTTGT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgataaggaactttgaggctgaaattctc
tgtaacaataaggaactccaggctcagagcaaagttaaggttcctcataa
aaaaaaacgtgtataagggAAGAGAAGAATTTTTGCCACTTATGAATCTC
TTGAATCTTTCGTTTGAAACTGTTACAAGCCTTACAATCATATAACAACA
AAGCTATTAAACTATTCTTCCATTTCAATTACATAATAGaacaaaaacga
aagaaaaaattaaaacgaGCCAATCAGAACAAAGGAAAATACAACGCAAG
CCAATCATGATGGATGACAGTAGTGATGATGAACGAGAATCATTGGCTGG
TGAAAGGTCACATGACCCATCAACAGTCTTCGCAACAATGATTAAATTTG
ATTTCAATTACATCACCAAGACATGGATAGGACGTGTCAAATTAGCTCAG
CTCATTTGCTGCATATTAGCAGGTTGTATTCTCCCAACAACAATAGCGTT
CTATTTCACACGTTTCTCATTCTACACCTTCGTCATCTGGACATGTTTCA
TGTACATCTTTATCGATCTCCTCATCCACGTGACCAGCATCGCAAAATTG
GCGCCCGACTTTTGCCGGACCACCGATATCATGATGTATCCGTTATTTAT
CGGTGCGTTAACACTTCTCTTGAGTGCTTCATTAGTGGCTAGCGTAACTG
ACATTCATCATGGTAGCCGAGCAACGCGCATtggattttcagcatttttt
ggatTGATCCTAATGGCCTTATTCTTGTTTGAAGCCTTTTTACAGTACCG
TCGAGCACGTAACAACGGTGTAGAGCCACCTTTGTTTAGTTTCTCATTGC
CAGGAAGAAGAGCACCCACTACTGATATTGACGCTGAGAACGGAAACATT
CCCGCTGGACGAAATATTGTAATTTCAAGACCGACATCCCTTAGGGCCGT
CGAGGAACAACCACCACCTTATAGTAAGGGAATGGAAGGGGCGGACAAAG
GTGGCGTCGCTGTGCCCCTTGGATCTTATGGTGGACAGTAAACTTTCCAA
TAATTATTTGCGTGATCTCATCAAACAGTACCTTACATAGGAAAtgcaga
aaaaattattttcaatagagcaaaatatgttttaaggtattaaatcaaat
ataaacttgtacagatttttttcgaagattcgTATTCGTGTAATATTTAC
GTATTCACAATTTGGACAAattgtcaacaacaacaatTTTAGTAGAAAAG
ATGATTCTTTAAAAGCAATTTAGTTACCCATTATAGGATATTATGATAAT
ACCACGTAAtggactcttccagaaaaaaattgaaaatggggAGGGGAGGT
GGAGGATATTTGAATATTTGGaaatttgccccccccccacggacattttg
acttttgacccccgggCAGCAGGTATAACCcaccggacaagcatcagttg
acccctggacattcaaaagtaccctcaaacagagcaatgTTACCCAAAAA
TAGAGTATTTTTACCCCccagacaaggcaaattttgtagattttttactA
CCCCCCGGATACTTTATCCTCCACCttccatgtacggacattttttAGAA
GAGCCCAATATGACCCTTttgtaaagtatttttttgaatGTATAGAATTT
TTGTATCATAGTTTGAAATTACAGCCTTAGCGTAAatataaattcaattt
ttcttaaaaactaattgagatatatttttcaagCCCTGCTAAGGCTAATA
AAGTCCCCAAAATAGCATCATTGGACACCAATATCCAATAAAGTAACCCC
CTGTTACCGACACAGTTAAAAGGATTGAGTTTTTCTGATCAGAAATTTGT
ATGGTGTATGGTTTACAAATTGTACACCAGTCGACGCAGAATTTCATGTA
GATTCCAAATATGCAATAACAACTTTTGTTTTAAGTTATGAACTTTGACC
CTCTACTGCG Coding sequence (CDS) from alignment at sc0000059:314757..319616+ >TCONS_00005732 ID=TCONS_00005732|Name=TCONS_00005732|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000059:314757..319616+ (Clytia hemisphaerica)
ATGATAGTAGTGAAAGATGTCGCGGAACTTACTTGGAAATTGGCaacaaa
aacgaaagaaaaaattaaaacgaGCCAATCAGAACAAAGGAAAATACAAC
GCAAGCCAATCATGATGGATGACAGTAGTGATGATGAACGAGAATCATTG
GCTGGTGAAAGGTCACATGACCCATCAACAGTCTTCGCAACAATGATTAA
ATTTGATTTCAATTACATCACCAAGACATGGATAGGACGTGTCAAATTAG
CTCAGCTCATTTGCTGCATATTAGCAGGTTGTATTCTCCCAACAACAATA
GCGTTCTATTTCACACGTTTCTCATTCTACACCTTCGTCATCTGGACATG
TTTCATGTACATCTTTATCGATCTCCTCATCCACGTGACCAGCATCGCAA
AATTGGCGCCCGACTTTTGCCGGACCACCGATATCATGATGTATCCGTTA
TTTATCGGTGCGTTAACACTTCTCTTGAGTGCTTCATTAGTGGCTAGCGT
AACTGACATTCATCATGGTAGCCGAGCAACGCGCATtggattttcagcat
tttttggatTGATCCTAATGGCCTTATTCTTGTTTGAAGCCTTTTTACAG
TACCGTCGAGCACGTAACAACGGTGTAGAGCCACCTTTGTTTAGTTTCTC
ATTGCCAGGAAGAAGAGCACCCACTACTGATATTGACGCTGAGAACGGAA
ACATTCCCGCTGGACGAAATATTGTAATTTCAAGACCGACATCCCTTAGG
GCCGTCGAGGAACAACCACCACCTTATAGTAAGGGAATGGAAGGGGCGGA
CAAAGGTGGCGTCGCTGTGCCCCTTGGATCTTATGGTGGACAGTAAATGA
TAGTAGTGAAAGATGTCGCGGAACTTACTTGGAAATTGGCaacaaaaacg
aaagaaaaaattaaaacgaGCCAATCAGAACAAAGGAAAATACAACGCAA
GCCAATCATGATGGATGACAGTAGTGATGATGAACGAGAATCATTGGCTG
GTGAAAGGTCACATGACCCATCAACAGTCTTCGCAACAATGATTAAATTT
GATTTCAATTACATCACCAAGACATGGATAGGACGTGTCAAATTAGCTCA
GCTCATTTGCTGCATATTAGCAGGTTGTATTCTCCCAACAACAATAGCGT
TCTATTTCACACGTTTCTCATTCTACACCTTCGTCATCTGGACATGTTTC
ATGTACATCTTTATCGATCTCCTCATCCACGTGACCAGCATCGCAAAATT
GGCGCCCGACTTTTGCCGGACCACCGATATCATGATGTATCCGTTATTTA
TCGGTGCGTTAACACTTCTCTTGAGTGCTTCATTAGTGGCTAGCGTAACT
GACATTCATCATGGTAGCCGAGCAACGCGCATtggattttcagcattttt
tggatTGATCCTAATGGCCTTATTCTTGTTTGAAGCCTTTTTACAGTACC
GTCGAGCACGTAACAACGGTGTAGAGCCACCTTTGTTTAGTTTCTCATTG
CCAGGAAGAAGAGCACCCACTACTGATATTGACGCTGAGAACGGAAACAT
TCCCGCTGGACGAAATATTGTAATTTCAAGACCGACATCCCTTAGGGCCG
TCGAGGAACAACCACCACCTTATAGTAAGGGAATGGAAGGGGCGGACAAA
GGTGGCGTCGCTGTGCCCCTTGGATCTTATGGTGGACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005732-exon-sc0000059-1491911889:314757..314819 | TCONS_00005732-exon-sc0000059-1491911889:314757..314819 | Clytia hemisphaerica | exon |
| TCONS_00005732-exon-sc0000059-1510915933:314757..314819 | TCONS_00005732-exon-sc0000059-1510915933:314757..314819 | Clytia hemisphaerica | exon |
| TCONS_00005732-exon-sc0000059-1575043694:314757..314819 | TCONS_00005732-exon-sc0000059-1575043694:314757..314819 | Clytia hemisphaerica | exon |
| TCONS_00005732-exon-sc0000059-1491911889:317896..319616 | TCONS_00005732-exon-sc0000059-1491911889:317896..319616 | Clytia hemisphaerica | exon |
| TCONS_00005732-exon-sc0000059-1510915933:317896..319616 | TCONS_00005732-exon-sc0000059-1510915933:317896..319616 | Clytia hemisphaerica | exon |
| TCONS_00005732-exon-sc0000059-1575043694:317896..319616 | TCONS_00005732-exon-sc0000059-1575043694:317896..319616 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:314757..319616 + |
Blast
The following BLAST results are available for this feature:
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