|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005730 ID=TCONS_00005730|Name=TCONS_00005730|organism=Clytia hemisphaerica|type=transcript|length=901bp
agggaaGGTTTTCcgagaccctcgaaatgcaTTcttCTTTTACAGGATTT
ATGGATCAATTCCGGAGATTGTAAAATATGATCAACCACATACTgcaAAA
ACTTTTCGGTAAAACCACCATGTATGTATTGAATAGAagaacgtcgttta
tgagagttttacCTTGTTGACGGTGACGGTGACTTGAAACATCCTGTCTC
CATGACTTGGTCAGAATTCTTCAGCCATCGTTGGCAAAAAAGGGGGGTTA
ATGAACTATAGTTCTTTTTAAAGTAAGCCGGGGACCTATTGTGTCTTCAA
TACGGCTAATTTGGCACTGAATGTAGAAAGATTGCTCAGGGTCAGATTAT
GCTAAAATCTGCTCTCAAATTTTGGCCGAATTCCCGCCTTTTTTTATAAC
TGTGCATTCGTAGATTTAAAAAGTGTGCCTCCCAAGTCACGTTTTAACCC
TTCTTACTAATATTTCTGTAAACTCTTTAAAAGTCCAATAATCCTCGGGT
TTTTAGGCGATTTTGGAATTCTTTGAGGTCTTTTTATACACTTATTGCTT
ATATCGAGGTCAAatatttttacttctttttgaaACTATCTTTGTAAGTA
GTGGattaaacttaaactttttaTTTGACATTATTGATAATAAAGTCGAT
AAAAGTTTATATCGATTATAAAGTGTTCACAAGGTGTGGCCTTTTTGAAG
TTACAAAGAAGATTCTTTAGATGACGAACTGTTCTTGCAGAGAGTGGTAT
TATACTTGTCACGCAAAGCGAGAGAGTAATGCAGTAGCGTTTTAGATTGA
TTGAACAGAGTATGCGAGTAGTATGTATAAATCAATTAATATTACATTGC
GACAGATAAAATAAGAAATAGCGGTTTGGATCGAATTATACTTTCTCTTT
T Run BLAST on NCBI transcript from alignment at sc0000059:312109..313609+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005730 ID=TCONS_00005730|Name=TCONS_00005730|organism=Clytia hemisphaerica|type=transcript|length=1501bp|location=Sequence derived from alignment at sc0000059:312109..313609+ (Clytia hemisphaerica)
agggaaGGTTTTCcgagaccctcgaaatgcaTTGTAAGTGTGTACTTTTG
AGAGATTGCACTATAATCTGATCTTTTTTAGCTGCATACACCGTAAGGTC
GGGTTTGGGAAAAATCTGGATGTATCTTTATATAGTATTTTTGGACTCGC
ACCGATTTTGATTTGTTTAGCACATTGTGTTAACATCTCTGGGCTCATTT
TCAGGTGCCTTCAGcgaaataagatatgaaatcaaactaccCTGTAAGGG
TCAAAAACGTttggtaaaatgcactgtaagggtaccttttcaaaGCTCAA
GGGCGGCACTGTAAGGCCGAttctgaaaataactttttggcGGCACaagc
cgtcgtttagaaatcgagtgccccccgggTTTTAAAGAGTCGAAGAGTCG
CGTATCTGTTGATTTCTCGAATCAATCATATTTCTTTCAATGGACAAATC
GGTGGGACCGGGTGGAACattacaatatttttattttactttttagcttC
TTTTACAGGATTTATGGATCAATTCCGGAGATTGTAAAATATGATCAACC
ACATACTggtgacgctctctaattctaTCTTtaaggggaatcggattttc
atcggATAAGGGAACGTATTGAATAGATAGGTTTAAATCAGCCATTCcat
aaagttataagaaaaaaaaaaaaaaaagctttatttttatttcagcaAAA
ACTTTTCGGTAAAACCACCATGTATGTATTGAATAGAagaacgtcgttta
tgagagttttacCTTGTTGACGGTGACGGTGACTTGAAACATCCTGTCTC
CATGACTTGGTCAGAATTCTTCAGCCATCGTTGGCAAAAAAGGGGGGTTA
ATGAACTATAGTTCTTTTTAAAGTAAGCCGGGGACCTATTGTGTCTTCAA
TACGGCTAATTTGGCACTGAATGTAGAAAGATTGCTCAGGGTCAGATTAT
GCTAAAATCTGCTCTCAAATTTTGGCCGAATTCCCGCCTTTTTTTATAAC
TGTGCATTCGTAGATTTAAAAAGTGTGCCTCCCAAGTCACGTTTTAACCC
TTCTTACTAATATTTCTGTAAACTCTTTAAAAGTCCAATAATCCTCGGGT
TTTTAGGCGATTTTGGAATTCTTTGAGGTCTTTTTATACACTTATTGCTT
ATATCGAGGTCAAatatttttacttctttttgaaACTATCTTTGTAAGTA
GTGGattaaacttaaactttttaTTTGACATTATTGATAATAAAGTCGAT
AAAAGTTTATATCGATTATAAAGTGTTCACAAGGTGTGGCCTTTTTGAAG
TTACAAAGAAGATTCTTTAGATGACGAACTGTTCTTGCAGAGAGTGGTAT
TATACTTGTCACGCAAAGCGAGAGAGTAATGCAGTAGCGTTTTAGATTGA
TTGAACAGAGTATGCGAGTAGTATGTATAAATCAATTAATATTACATTGC
GACAGATAAAATAAGAAATAGCGGTTTGGATCGAATTATACTTTCTCTTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005730-exon-sc0000059-1491911889:312109..312141 | TCONS_00005730-exon-sc0000059-1491911889:312109..312141 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1510915933:312109..312141 | TCONS_00005730-exon-sc0000059-1510915933:312109..312141 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1575043694:312109..312141 | TCONS_00005730-exon-sc0000059-1575043694:312109..312141 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1491911889:312605..312666 | TCONS_00005730-exon-sc0000059-1491911889:312605..312666 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1510915933:312605..312666 | TCONS_00005730-exon-sc0000059-1510915933:312605..312666 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1575043694:312605..312666 | TCONS_00005730-exon-sc0000059-1575043694:312605..312666 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1491911889:312804..313609 | TCONS_00005730-exon-sc0000059-1491911889:312804..313609 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1510915933:312804..313609 | TCONS_00005730-exon-sc0000059-1510915933:312804..313609 | Clytia hemisphaerica | exon |
| TCONS_00005730-exon-sc0000059-1575043694:312804..313609 | TCONS_00005730-exon-sc0000059-1575043694:312804..313609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:312109..313609 + |
Blast
The following BLAST results are available for this feature:
|
