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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005729 ID=TCONS_00005729|Name=TCONS_00005729|organism=Clytia hemisphaerica|type=transcript|length=896bp
gcccttaagggaaGGTTTTCcgagaccctcgaaatgcaTTGATTTATGGA
TCAATTCCGGAGATTGTAAAATATGATCAACCACATACTgcaAAAACTTT
TCGGTAAAACCACCATGTATGTATTGAATAGAagaacgtcgtttatgaga
gttttacCTTGTTGACGGTGACGGTGACTTGAAACATCCTGTCTCCATGA
CTTGGTCAGAATTCTTCAGCCATCGTTGGCAAAAAAGGGGGGTTAATGAA
CTATAGTTCTTTTTAAAGTAAGCCGGGGACCTATTGTGTCTTCAATACGG
CTAATTTGGCACTGAATGTAGAAAGATTGCTCAGGGTCAGATTATGCTAA
AATCTGCTCTCAAATTTTGGCCGAATTCCCGCCTTTTTTTATAACTGTGC
ATTCGTAGATTTAAAAAGTGTGCCTCCCAAGTCACGTTTTAACCCTTCTT
ACTAATATTTCTGTAAACTCTTTAAAAGTCCAATAATCCTCGGGTTTTTA
GGCGATTTTGGAATTCTTTGAGGTCTTTTTATACACTTATTGCTTATATC
GAGGTCAAatatttttacttctttttgaaACTATCTTTGTAAGTAGTGGa
ttaaacttaaactttttaTTTGACATTATTGATAATAAAGTCGATAAAAG
TTTATATCGATTATAAAGTGTTCACAAGGTGTGGCCTTTTTGAAGTTACA
AAGAAGATTCTTTAGATGACGAACTGTTCTTGCAGAGAGTGGTATTATAC
TTGTCACGCAAAGCGAGAGAGTAATGCAGTAGCGTTTTAGATTGATTGAA
CAGAGTATGCGAGTAGTATGTATAAATCAATTAATATTACATTGCGACAG
ATAAAATAAGAAATAGCGGTTTGGATCGAATTATACTTTCTCTTTT Run BLAST on NCBI transcript from alignment at sc0000059:312102..313609+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005729 ID=TCONS_00005729|Name=TCONS_00005729|organism=Clytia hemisphaerica|type=transcript|length=1508bp|location=Sequence derived from alignment at sc0000059:312102..313609+ (Clytia hemisphaerica)
gcccttaagggaaGGTTTTCcgagaccctcgaaatgcaTTGTAAGTGTGT
ACTTTTGAGAGATTGCACTATAATCTGATCTTTTTTAGCTGCATACACCG
TAAGGTCGGGTTTGGGAAAAATCTGGATGTATCTTTATATAGTATTTTTG
GACTCGCACCGATTTTGATTTGTTTAGCACATTGTGTTAACATCTCTGGG
CTCATTTTCAGGTGCCTTCAGcgaaataagatatgaaatcaaactaccCT
GTAAGGGTCAAAAACGTttggtaaaatgcactgtaagggtaccttttcaa
aGCTCAAGGGCGGCACTGTAAGGCCGAttctgaaaataactttttggcGG
CACaagccgtcgtttagaaatcgagtgccccccgggTTTTAAAGAGTCGA
AGAGTCGCGTATCTGTTGATTTCTCGAATCAATCATATTTCTTTCAATGG
ACAAATCGGTGGGACCGGGTGGAACattacaatatttttattttactttt
tagcttCTTTTACAGGATTTATGGATCAATTCCGGAGATTGTAAAATATG
ATCAACCACATACTggtgacgctctctaattctaTCTTtaaggggaatcg
gattttcatcggATAAGGGAACGTATTGAATAGATAGGTTTAAATCAGCC
ATTCcataaagttataagaaaaaaaaaaaaaaaagctttatttttatttc
agcaAAAACTTTTCGGTAAAACCACCATGTATGTATTGAATAGAagaacg
tcgtttatgagagttttacCTTGTTGACGGTGACGGTGACTTGAAACATC
CTGTCTCCATGACTTGGTCAGAATTCTTCAGCCATCGTTGGCAAAAAAGG
GGGGTTAATGAACTATAGTTCTTTTTAAAGTAAGCCGGGGACCTATTGTG
TCTTCAATACGGCTAATTTGGCACTGAATGTAGAAAGATTGCTCAGGGTC
AGATTATGCTAAAATCTGCTCTCAAATTTTGGCCGAATTCCCGCCTTTTT
TTATAACTGTGCATTCGTAGATTTAAAAAGTGTGCCTCCCAAGTCACGTT
TTAACCCTTCTTACTAATATTTCTGTAAACTCTTTAAAAGTCCAATAATC
CTCGGGTTTTTAGGCGATTTTGGAATTCTTTGAGGTCTTTTTATACACTT
ATTGCTTATATCGAGGTCAAatatttttacttctttttgaaACTATCTTT
GTAAGTAGTGGattaaacttaaactttttaTTTGACATTATTGATAATAA
AGTCGATAAAAGTTTATATCGATTATAAAGTGTTCACAAGGTGTGGCCTT
TTTGAAGTTACAAAGAAGATTCTTTAGATGACGAACTGTTCTTGCAGAGA
GTGGTATTATACTTGTCACGCAAAGCGAGAGAGTAATGCAGTAGCGTTTT
AGATTGATTGAACAGAGTATGCGAGTAGTATGTATAAATCAATTAATATT
ACATTGCGACAGATAAAATAAGAAATAGCGGTTTGGATCGAATTATACTT
TCTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005729-exon-sc0000059-1491911889:312102..312141 | TCONS_00005729-exon-sc0000059-1491911889:312102..312141 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1510915933:312102..312141 | TCONS_00005729-exon-sc0000059-1510915933:312102..312141 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1575043694:312102..312141 | TCONS_00005729-exon-sc0000059-1575043694:312102..312141 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1491911889:312617..312666 | TCONS_00005729-exon-sc0000059-1491911889:312617..312666 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1510915933:312617..312666 | TCONS_00005729-exon-sc0000059-1510915933:312617..312666 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1575043694:312617..312666 | TCONS_00005729-exon-sc0000059-1575043694:312617..312666 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1491911889:312804..313609 | TCONS_00005729-exon-sc0000059-1491911889:312804..313609 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1510915933:312804..313609 | TCONS_00005729-exon-sc0000059-1510915933:312804..313609 | Clytia hemisphaerica | exon |
| TCONS_00005729-exon-sc0000059-1575043694:312804..313609 | TCONS_00005729-exon-sc0000059-1575043694:312804..313609 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000059 | supercontig | sc0000059:312102..313609 + |
Blast
The following BLAST results are available for this feature:
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