TCONS_00005718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005718
Unique NameTCONS_00005718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005718 ID=TCONS_00005718|Name=TCONS_00005718|organism=Clytia hemisphaerica|type=transcript|length=715bp
NNTCTCAGGTTTCTTGTAGATTTTCCATTTCTGCGCGTCTCTTGTGATGG
TTCGATCTGGTCGTGATGCTGTGATTTGGTGTCCATTGATTGAGATGACT
TCATATGGCGATGGGTCGAAGGGTGGTTTGGATTTGGTGCTCTTTTGTTT
CAGGAGAACAGTGTCCCCAAGCTGGATGTTGTGATGCTTGACGTATGGCT
TGTTGTCTTTGTAGTGGGATTGTTTCATCTTCTGCgcattttccttttct
cttgcTTCGGTGATGTCTTTTCTGCTGGCTGTTTCATCTTGCTGTGGTAG
ACGTGAGTGGAATTTTCTGCCAAACAGGAGCTCTGCCGGGGCCTTTCCGG
TTGTTGGGTGTGGTGTGGCGCGGTACATCTGTAGAGTCTTGTTCAGCTCT
GCTTTAGGATCATTCTTTTCGACGATGGCTGTGTGCCAGACTTTCTTGCA
AATTTTCATGAAGGCTTCCGCAAGGCCATTCGCTTCCGGATCATCCGCGC
TGAGCGTTGGTTCGTGACGGATACCTGCCCACTTGAAATATTCTTGGAGT
TGGTGGTGCTCTTTTCCATTGAAAGGTGGGCCGTTGTCCGTTTTCAACCG
TTTGCAATAGCCGTGTCTTGTGAATATGTCATCAAACGCCTGGATGTTGT
GTTCTGATCCTGTCCCTTTTACCACTGCTACTTCTGGATATCTTGACAGT
TCGTCTATCACCANN
Run BLAST on NCBI

protein sequence of TCONS_00005718-protein

>TCONS_00005718-protein ID=TCONS_00005718-protein|Name=TCONS_00005718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
XVIDELSRYPEVAVVKGTGSEHNIQAFDDIFTRHGYCKRLKTDNGPPFNG
KEHHQLQEYFKWAGIRHEPTLSADDPEANGLAEAFMKICKKVWHTAIVEK
NDPKAELNKTLQMYRATPHPTTGKAPAELLFGRKFHSRLPQQDETASRKD
ITEAREKENAQKMKQSHYKDNKPYVKHHNIQLGDTVLLKQKSTKSKPPFD
PSPYEVISINGHQITASRPDRTITRDAQKWKIYKKPEX
Run BLAST on NCBI

transcript from alignment at sc0000054:815054..815768

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005718 ID=TCONS_00005718|Name=TCONS_00005718|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000054:815054..815768 (Clytia hemisphaerica)
NNTGGTGATAGACGAACTGTCAAGATATCCAGAAGTAGCAGTGGTAAAAG
GGACAGGATCAGAACACAACATCCAGGCGTTTGATGACATATTCACAAGA
CACGGCTATTGCAAACGGTTGAAAACGGACAACGGCCCACCTTTCAATGG
AAAAGAGCACCACCAACTCCAAGAATATTTCAAGTGGGCAGGTATCCGTC
ACGAACCAACGCTCAGCGCGGATGATCCGGAAGCGAATGGCCTTGCGGAA
GCCTTCATGAAAATTTGCAAGAAAGTCTGGCACACAGCCATCGTCGAAAA
GAATGATCCTAAAGCAGAGCTGAACAAGACTCTACAGATGTACCGCGCCA
CACCACACCCAACAACCGGAAAGGCCCCGGCAGAGCTCCTGTTTGGCAGA
AAATTCCACTCACGTCTACCACAGCAAGATGAAACAGCCAGCAGAAAAGA
CATCACCGAAgcaagagaaaaggaaaatgcGCAGAAGATGAAACAATCCC
ACTACAAAGACAACAAGCCATACGTCAAGCATCACAACATCCAGCTTGGG
GACACTGTTCTCCTGAAACAAAAGAGCACCAAATCCAAACCACCCTTCGA
CCCATCGCCATATGAAGTCATCTCAATCAATGGACACCAAATCACAGCAT
CACGACCAGATCGAACCATCACAAGAGACGCGCAGAAATGGAAAATCTAC
AAGAAACCTGAGANN

Coding sequence (CDS) from alignment at sc0000054:815054..815768

>TCONS_00005718 ID=TCONS_00005718|Name=TCONS_00005718|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000054:815054..815768 (Clytia hemisphaerica)
NTGGTGATAGACGAACTGTCAAGATATCCAGAAGTAGCAGTGGTAAAAGG
GACAGGATCAGAACACAACATCCAGGCGTTTGATGACATATTCACAAGAC
ACGGCTATTGCAAACGGTTGAAAACGGACAACGGCCCACCTTTCAATGGA
AAAGAGCACCACCAACTCCAAGAATATTTCAAGTGGGCAGGTATCCGTCA
CGAACCAACGCTCAGCGCGGATGATCCGGAAGCGAATGGCCTTGCGGAAG
CCTTCATGAAAATTTGCAAGAAAGTCTGGCACACAGCCATCGTCGAAAAG
AATGATCCTAAAGCAGAGCTGAACAAGACTCTACAGATGTACCGCGCCAC
ACCACACCCAACAACCGGAAAGGCCCCGGCAGAGCTCCTGTTTGGCAGAA
AATTCCACTCACGTCTACCACAGCAAGATGAAACAGCCAGCAGAAAAGAC
ATCACCGAAgcaagagaaaaggaaaatgcGCAGAAGATGAAACAATCCCA
CTACAAAGACAACAAGCCATACGTCAAGCATCACAACATCCAGCTTGGGG
ACACTGTTCTCCTGAAACAAAAGAGCACCAAATCCAAACCACCCTTCGAC
CCATCGCCATATGAAGTCATCTCAATCAATGGACACCAAATCACAGCATC
ACGACCAGATCGAACCATCACAAGAGACGCGCAGAAATGGAAAATCTACA
AGAAACCTGAGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003243XLOC_003243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005718-exon-sc0000054-1491911889:815054..815768TCONS_00005718-exon-sc0000054-1491911889:815054..815768Clytia hemisphaericaexon
TCONS_00005718-exon-sc0000054-1510915933:815054..815768TCONS_00005718-exon-sc0000054-1510915933:815054..815768Clytia hemisphaericaexon
TCONS_00005718-exon-sc0000054-1575043694:815054..815768TCONS_00005718-exon-sc0000054-1575043694:815054..815768Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005718-proteinTCONS_00005718-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:815054..815768 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.59779	2.58805	5.60291	4.3873	2.42901	2.24151	3.96628	5.82295	4.62808	5.1504	5.07665	5.47705	4.15693	6.53053	2.52168	3.36068	4.49635	4.50865	5.93259	7.40654	7.61637	6.61577	4.36356	4.02908	9.61694	11.2795	8.26271	5.95684	3.33419	1.79571
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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