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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005701 ID=TCONS_00005701|Name=TCONS_00005701|organism=Clytia hemisphaerica|type=transcript|length=2931bp
TATGAGACAATTAGAGATAATCTAAAGGGCTGAACAAGAATATAATTGGC
ATAATTTTGGGCTGCtacacaataaaaaaatatatcggATGAAGGGAAAC
CTCCAGATTTACCTAATTTGTTTGAAATGGCTTCTTCAAACTTCCTTAAT
GATATATTTTTTCCTCGTAATTTGAGCAATATACAACCTGCTTGCAATGT
CATTGTTTTATAATTATATCATTATAGTGCATTTGTAGAAATACTGAGTG
GGTGTACGTGACAGAAAATCCAAGAATCTATATATCAACGGAACATTGGA
ACGTGGGCTATTATTTCTAGTTTGGATTTAAAAGAAACACACGCGTGTCG
TCGAGGACAATCTCTTAACGAAATTGACAAACTACTCGCGCAAATTAATt
gtagattttcaaaataaattccaAAGACACTCGAAAAATTTCACTTGGGA
ATACATCTTTGGAGCAGACGTATCATATTTGCTTGGATATTTTAACCAAT
TTGGATCATCAATATAATTTTCAATTGCGATTACCGTgcttttttgggac
aatttgatTACTTCAAGAAAGACATTGGAAAACGCACAATAAGAATCTTC
TCTTTATTCAAACCTAACCGGTGTATAGTACCGTCAAAACAGCACCAACG
CCTATAATATCCTAAGACGTTAGGTGAGCCTTGTAACCAAAAAGCCGCAA
CGATGCCAGATTTCTTGCAAGCAATTGACGAACGATGTGGAACAACACAC
AATTACACTGCGTTATCCATATTTTCCAGTACGTCATCTGGTGTTATGAT
GGTATTCACTATCCCTCTAAATGCTGTCATTATTTATTCTCTAAtcaaag
aacaaaagaagaagTACAAAAGCTTGTTTTATAAACTCCTTTTAAACATT
GCAATCGCTGATTTACTTACAGGACTTATCGCTGATCCAACTGCGGTAAA
CGCTCTAACCAAGGAAGCTATGAGAGAAACATTGACCAAATTTGAAGTTT
ATATCATTcacttatcattgttttttacCGATGCGGTGGCATTATTGACT
CTAAGTATACTTAGCGTTGATCGAATAATCGCCATAATGTTCCCCATTAA
GCACCATAAAGGAATAAAAAAGTCCAAGAAAGTTTTACTGGTTTTAAGTG
CATGGGTATTTGGTATTGTTTTGGTATTGCCGTATTTTAAAGTGAACTTT
ATTAGACAATTGTTGATCTTTTCCACTGTCAATATTGTTGTGACAATCCT
GTCCTTAATTGTGACTACATTGACGTATCGCCATAAACTCCGCCCTAAAC
AACGTGGGCGTAACACTACATCAAAGAAGCAAGGAAACCCAATTCCTCTC
AGATCAGTTAAGGGAAACTCAAACGAAGTTTTGTCTACAGAGGGTCTACA
GGCAATAACACCAAATCCTGTCTTAGCAACAACTACCAAAAAGGAGAATA
ACAATAACTTGAAATTTATCGATAAACAGACTAGAAGCCAACAAAAAGCG
ACTCGGACATTCATCTTAATGTTGTGTGTCTTCATCGGGACATACTTCCC
GACAGCTGTAACAATGCTTTATATGAACATATGCACTAAATGTAATTGCC
TAGCTGTTCATGTCATGCGAGATATATCGATATTATCGATTTTATCGAGT
TCCGTTTTTCGACCGCTGAATTTCATTTTGACATTGAAACATTTAAGATC
GTcagttttgcatatttttaagaAGCCGACCGAACAATTCACTATCTCGG
GAACTTCTGATGTTACGGCCCAATAAAACTTGGTGTGTGTATTTTGTAAT
GACTAAAATACTCTGTATAATACGGAATATATattaaaatttatctttaa
ctttaaggcgagaccaattaaatttgttgttctacgggcgcgACCGACNT
GTGACTACATTGACGTATCGCCATAAACTCCGCCCTAAACAACGTGGGCG
TAACACTACATCAAAGAAGCAAGGAAACCCAATTCCTCTCAGATCAGTTA
AGGGAAACTCAAACGAAGTTTTGTCTACAGAGGGTCTACAGGCAATAACA
CCAAATCCTGTCTTAGCAACAACTACCAAAAAGGAGAATAACAATAACTT
GAAATTTATCGATAAACAGACTAGAAGCCAACAAAAAGCGACTCGGACAT
TCATCTTAATGTTGTGTGTCTTCATCGGGACATACTTCCCGACAGCTGTA
ACAATGCTTTATATGAACATATGCACTAAATGTAATTGCCTAGCTGTTCA
TGTCATGCGAGATATATCGATATTATCGATTTTATCGAGTTCCGTTTTTC
GACCGCTGAATTTCATTTTGACATTGAAACATTTAAGATCGTcagttttg
catatttttaagaAGCCGACCGAACAATTCACTATCTCGGGAACTTCTGA
TGTTACGGCCCAATAAAACTTGGTGTGGGTATTTTGTAATGACTAAAATA
CTATGTATAATACGGAATAtatattaaaatttatttttaactttaaggcg
agaccaattaaatttgttgttctacgggctcGACCGACCCAGTATTTGct
gcaaacgaaaaaataataatattgaatttcctatgccacaaatttctaat
actagtcatttaaaaaatttacacttgaaaaaagttgaaaagaatctaaa
atcatgaattttatgcacgaaagattttattacaaGCTCATTCAAagatg
aatgatgaattttcgaccaagattatttgaaaatattacttaaaACCTAA
TTACCttccttgattaatgaaaatcttatttttattttaccgaccgaccg
actcatattttgttaacgatctgcccgtagaacaacaaattaaattggtc
tcgtctAACGAGAAATGTAGTTAACATGAATTATAGGAGAGATTTGAATC
CTGTCATAAAACGTGTATATTTTAAAAGAAC Run BLAST on NCBI protein sequence of TCONS_00005701-protein >TCONS_00005701-protein ID=TCONS_00005701-protein|Name=TCONS_00005701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MPDFLQAIDERCGTTHNYTALSIFSSTSSGVMMVFTIPLNAVIIYSLIKE
QKKKYKSLFYKLLLNIAIADLLTGLIADPTAVNALTKEAMRETLTKFEVY
IIHLSLFFTDAVALLTLSILSVDRIIAIMFPIKHHKGIKKSKKVLLVLSA
WVFGIVLVLPYFKVNFIRQLLIFSTVNIVVTILSLIVTTLTYRHKLRPKQ
RGRNTTSKKQGNPIPLRSVKGNSNEVLSTEGLQAITPNPVLATTTKKENN
NNLKFIDKQTRSQQKATRTFILMLCVFIGTYFPTAVTMLYMNICTKCNCL
AVHVMRDISILSILSSSVFRPLNFILTLKHLRSSVLHIFKKPTEQFTISG
TSDVTAQ Run BLAST on NCBI transcript from alignment at sc0000054:555858..558788 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005701 ID=TCONS_00005701|Name=TCONS_00005701|organism=Clytia hemisphaerica|type=transcript|length=2931bp|location=Sequence derived from alignment at sc0000054:555858..558788 (Clytia hemisphaerica)
GTTCTTTTAAAATATACACGTTTTATGACAGGATTCAAATCTCTCCTATA
ATTCATGTTAACTACATTTCTCGTTagacgagaccaatttaatttgttgt
tctacgggcagatcgttaacaaaatatgagtcggtcggtcggtaaaataa
aaataagattttcattaatcaaggaaGGTAATTAGGTtttaagtaatatt
ttcaaataatcttggtcgaaaattcatcattcatctTTGAATGAGCttgt
aataaaatctttcgtgcataaaattcatgattttagattcttttcaactt
ttttcaagtgtaaattttttaaatgactagtattagaaatttgtggcata
ggaaattcaatattattattttttcgtttgcagCAAATACTGGGTCGGTC
gagcccgtagaacaacaaatttaattggtctcgccttaaagttaaaaata
aattttaatataTATTCCGTATTATACATAGTATTTTAGTCATTACAAAA
TACCCACACCAAGTTTTATTGGGCCGTAACATCAGAAGTTCCCGAGATAG
TGAATTGTTCGGTCGGCTtcttaaaaatatgcaaaactgACGATCTTAAA
TGTTTCAATGTCAAAATGAAATTCAGCGGTCGAAAAACGGAACTCGATAA
AATCGATAATATCGATATATCTCGCATGACATGAACAGCTAGGCAATTAC
ATTTAGTGCATATGTTCATATAAAGCATTGTTACAGCTGTCGGGAAGTAT
GTCCCGATGAAGACACACAACATTAAGATGAATGTCCGAGTCGCTTTTTG
TTGGCTTCTAGTCTGTTTATCGATAAATTTCAAGTTATTGTTATTCTCCT
TTTTGGTAGTTGTTGCTAAGACAGGATTTGGTGTTATTGCCTGTAGACCC
TCTGTAGACAAAACTTCGTTTGAGTTTCCCTTAACTGATCTGAGAGGAAT
TGGGTTTCCTTGCTTCTTTGATGTAGTGTTACGCCCACGTTGTTTAGGGC
GGAGTTTATGGCGATACGTCAATGTAGTCACANGTCGGTcgcgcccgtag
aacaacaaatttaattggtctcgccttaaagttaaagataaattttaatA
TATATTCCGTATTATACAGAGTATTTTAGTCATTACAAAATACACACACC
AAGTTTTATTGGGCCGTAACATCAGAAGTTCCCGAGATAGTGAATTGTTC
GGTCGGCTtcttaaaaatatgcaaaactgACGATCTTAAATGTTTCAATG
TCAAAATGAAATTCAGCGGTCGAAAAACGGAACTCGATAAAATCGATAAT
ATCGATATATCTCGCATGACATGAACAGCTAGGCAATTACATTTAGTGCA
TATGTTCATATAAAGCATTGTTACAGCTGTCGGGAAGTATGTCCCGATGA
AGACACACAACATTAAGATGAATGTCCGAGTCGCTTTTTGTTGGCTTCTA
GTCTGTTTATCGATAAATTTCAAGTTATTGTTATTCTCCTTTTTGGTAGT
TGTTGCTAAGACAGGATTTGGTGTTATTGCCTGTAGACCCTCTGTAGACA
AAACTTCGTTTGAGTTTCCCTTAACTGATCTGAGAGGAATTGGGTTTCCT
TGCTTCTTTGATGTAGTGTTACGCCCACGTTGTTTAGGGCGGAGTTTATG
GCGATACGTCAATGTAGTCACAATTAAGGACAGGATTGTCACAACAATAT
TGACAGTGGAAAAGATCAACAATTGTCTAATAAAGTTCACTTTAAAATAC
GGCAATACCAAAACAATACCAAATACCCATGCACTTAAAACCAGTAAAAC
TTTCTTGGACTTTTTTATTCCTTTATGGTGCTTAATGGGGAACATTATGG
CGATTATTCGATCAACGCTAAGTATACTTAGAGTCAATAATGCCACCGCA
TCGgtaaaaaacaatgataagtgAATGATATAAACTTCAAATTTGGTCAA
TGTTTCTCTCATAGCTTCCTTGGTTAGAGCGTTTACCGCAGTTGGATCAG
CGATAAGTCCTGTAAGTAAATCAGCGATTGCAATGTTTAAAAGGAGTTTA
TAAAACAAGCTTTTGTActtcttcttttgttctttgaTTAGAGAATAAAT
AATGACAGCATTTAGAGGGATAGTGAATACCATCATAACACCAGATGACG
TACTGGAAAATATGGATAACGCAGTGTAATTGTGTGTTGTTCCACATCGT
TCGTCAATTGCTTGCAAGAAATCTGGCATCGTTGCGGCTTTTTGGTTACA
AGGCTCACCTAACGTCTTAGGATATTATAGGCGTTGGTGCTGTTTTGACG
GTACTATACACCGGTTAGGTTTGAATAAAGAGAAGATTCTTATTGTGCGT
TTTCCAATGTCTTTCTTGAAGTAatcaaattgtcccaaaaaagcACGGTA
ATCGCAATTGAAAATTATATTGATGATCCAAATTGGTTAAAATATCCAAG
CAAATATGATACGTCTGCTCCAAAGATGTATTCCCAAGTGAAATTTTTCG
AGTGTCTTtggaatttattttgaaaatctacaATTAATTTGCGCGAGTAG
TTTGTCAATTTCGTTAAGAGATTGTCCTCGACGACACGCGTGTGTTTCTT
TTAAATCCAAACTAGAAATAATAGCCCACGTTCCAATGTTCCGTTGATAT
ATAGATTCTTGGATTTTCTGTCACGTACACCCACTCAGTATTTCTACAAA
TGCACTATAATGATATAATTATAAAACAATGACATTGCAAGCAGGTTGTA
TATTGCTCAAATTACGAGGAAAAAATATATCATTAAGGAAGTTTGAAGAA
GCCATTTCAAACAAATTAGGTAAATCTGGAGGTTTCCCTTCATccgatat
atttttttattgtgtaGCAGCCCAAAATTATGCCAATTATATTCTTGTTC
AGCCCTTTAGATTATCTCTAATTGTCTCATA Coding sequence (CDS) from alignment at sc0000054:555858..558788 >TCONS_00005701 ID=TCONS_00005701|Name=TCONS_00005701|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at sc0000054:555858..558788 (Clytia hemisphaerica)
TTATTGGGCCGTAACATCAGAAGTTCCCGAGATAGTGAATTGTTCGGTCG
GCTtcttaaaaatatgcaaaactgACGATCTTAAATGTTTCAATGTCAAA
ATGAAATTCAGCGGTCGAAAAACGGAACTCGATAAAATCGATAATATCGA
TATATCTCGCATGACATGAACAGCTAGGCAATTACATTTAGTGCATATGT
TCATATAAAGCATTGTTACAGCTGTCGGGAAGTATGTCCCGATGAAGACA
CACAACATTAAGATGAATGTCCGAGTCGCTTTTTGTTGGCTTCTAGTCTG
TTTATCGATAAATTTCAAGTTATTGTTATTCTCCTTTTTGGTAGTTGTTG
CTAAGACAGGATTTGGTGTTATTGCCTGTAGACCCTCTGTAGACAAAACT
TCGTTTGAGTTTCCCTTAACTGATCTGAGAGGAATTGGGTTTCCTTGCTT
CTTTGATGTAGTGTTACGCCCACGTTGTTTAGGGCGGAGTTTATGGCGAT
ACGTCAATGTAGTCACAATTAAGGACAGGATTGTCACAACAATATTGACA
GTGGAAAAGATCAACAATTGTCTAATAAAGTTCACTTTAAAATACGGCAA
TACCAAAACAATACCAAATACCCATGCACTTAAAACCAGTAAAACTTTCT
TGGACTTTTTTATTCCTTTATGGTGCTTAATGGGGAACATTATGGCGATT
ATTCGATCAACGCTAAGTATACTTAGAGTCAATAATGCCACCGCATCGgt
aaaaaacaatgataagtgAATGATATAAACTTCAAATTTGGTCAATGTTT
CTCTCATAGCTTCCTTGGTTAGAGCGTTTACCGCAGTTGGATCAGCGATA
AGTCCTGTAAGTAAATCAGCGATTGCAATGTTTAAAAGGAGTTTATAAAA
CAAGCTTTTGTActtcttcttttgttctttgaTTAGAGAATAAATAATGA
CAGCATTTAGAGGGATAGTGAATACCATCATAACACCAGATGACGTACTG
GAAAATATGGATAACGCAGTGTAATTGTGTGTTGTTCCACATCGTTCGTC
AATTGCTTGCAAGAAATCTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005701-exon-sc0000054-1491911889:555858..558788 | TCONS_00005701-exon-sc0000054-1491911889:555858..558788 | Clytia hemisphaerica | exon |
| TCONS_00005701-exon-sc0000054-1510915933:555858..558788 | TCONS_00005701-exon-sc0000054-1510915933:555858..558788 | Clytia hemisphaerica | exon |
| TCONS_00005701-exon-sc0000054-1575043694:555858..558788 | TCONS_00005701-exon-sc0000054-1575043694:555858..558788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:555858..558788 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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