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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005700 ID=TCONS_00005700|Name=TCONS_00005700|organism=Clytia hemisphaerica|type=transcript|length=1289bp
CGATTTTATTGATCAGCGTGGTGAAACCATTGACCTTTATTGAAACCTTT
CACTAAGCATCATTCTGGTTGGTAGGTCAATTTAtaaacaaatattaaaa
ttttgtcATCTACATTGaggcaaaaattattttcaatgattttgttAATC
CGGAATCGAGAGGCAAGGGATTTGGATAAGCTCCATGGGTGTAAAATCAG
AATATTTTAAAACCAAGTACGAAAATGCGACTAacggtcttttttcattt
ttttgctcCATCAAGGTGAAAACGTGTTGAAGGCCTTGAAACGTTTGGGT
GGCAAGAAGAAACCGATGAGCACTGCTGACcgatggaagaagaagaaaaa
caaggaagaagaaaaattatcggaaaaagaaaaagagcaaAAGGAAATGT
TATTGAAGTTGACCGGTCTTGCTGACGTTCTAATGAGTGAAGGAGATTTT
CAAATTTACgaaaaaacttttgagaaattgaatttcgagatcaaagaaag
tgaaaagaaagCTGGAGAAGATCAGTTTGCAGACGCGGAGGTTGATGATG
AGGACGACGCCCTGGAGGCGGCTTTTAAAGGTGAATCTACGGAGAAGAGT
tatgctgactcagcaaaaacaCAGGAGAAGGAGAGCGAACCAAAAGTGAA
CATCAGTGATGAAGTGCAATGGTTTTATAAGGAAAAAGATGACGAAAAGA
ATGAACTAAAAGGACCTTTCCCTTCATCACAGATGTTAAAATGGCAAGAA
GAAGGGAAATTTGGGGACGGTGTATATTGTCGAAGGGAGAATCAAGAAGG
TAGTTTATACAACTCAAGAAGAATCGATTTTGACCTTTACACGTAAAAGG
GAGATTGAATTTTAAAGTACTGCAATGAACGTTTGTTAATATTTCGGTAA
TCATTGATATGAAGATAGAGTCGTGTTGTTCTAAAGAAAATCGAAAACAA
AAGAGAAGTAATGCAACCCTTAGGTTTGGAAAGAGagctttttgttgaaa
aacattttttacttcagtgacggacacaaaaaattaattgtttttgtttg
ttggttAAGGCATGAACATTTTTTTacgttttatcaaaataattgatGCT
GGAGCTGagcagttttaaaatttttttttaaacataccTTATTTTTATTC
AAGATAATCTTCTGGTAGTTTCATAAACCAATTTCTCAAACTCCTTCATT
CTACATTCTTGTGATATATTTGTACAGTGTGTcttggaaaaatggaaaag
acTTATGAAAACATGTATCAGTAGGGAAAAAAGCGGCAC Run BLAST on NCBI protein sequence of TCONS_00005700-protein >TCONS_00005700-protein ID=TCONS_00005700-protein|Name=TCONS_00005700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MSTADRWKKKKNKEEEKLSEKEKEQKEMLLKLTGLADVLMSEGDFQIYEK
TFEKLNFEIKESEKKAGEDQFADAEVDDEDDALEAAFKGESTEKSYADSA
KTQEKESEPKVNISDEVQWFYKEKDDEKNELKGPFPSSQMLKWQEEGKFG
DGVYCRRENQEGSLYNSRRIDFDLYT Run BLAST on NCBI transcript from alignment at sc0000054:534345..535633 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005700 ID=TCONS_00005700|Name=TCONS_00005700|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at sc0000054:534345..535633 (Clytia hemisphaerica)
GTGCCGCTTTTTTCCCTACTGATACATGTTTTCATAAgtcttttccattt
ttccaagACACACTGTACAAATATATCACAAGAATGTAGAATGAAGGAGT
TTGAGAAATTGGTTTATGAAACTACCAGAAGATTATCTTGAATAAAAATA
AggtatgtttaaaaaaaaattttaaaactgctCAGCTCCAGCatcaatta
ttttgataaaacgtAAAAAAATGTTCATGCCTTaaccaacaaacaaaaac
aattaattttttgtgtccgtcactgaagtaaaaaatgtttttcaacaaaa
agctCTCTTTCCAAACCTAAGGGTTGCATTACTTCTCTTTTGTTTTCGAT
TTTCTTTAGAACAACACGACTCTATCTTCATATCAATGATTACCGAAATA
TTAACAAACGTTCATTGCAGTACTTTAAAATTCAATCTCCCTTTTACGTG
TAAAGGTCAAAATCGATTCTTCTTGAGTTGTATAAACTACCTTCTTGATT
CTCCCTTCGACAATATACACCGTCCCCAAATTTCCCTTCTTCTTGCCATT
TTAACATCTGTGATGAAGGGAAAGGTCCTTTTAGTTCATTCTTTTCGTCA
TCTTTTTCCTTATAAAACCATTGCACTTCATCACTGATGTTCACTTTTGG
TTCGCTCTCCTTCTCCTGtgtttttgctgagtcagcataACTCTTCTCCG
TAGATTCACCTTTAAAAGCCGCCTCCAGGGCGTCGTCCTCATCATCAACC
TCCGCGTCTGCAAACTGATCTTCTCCAGctttcttttcactttctttgat
ctcgaaattcaatttctcaaaagttttttcGTAAATTTGAAAATCTCCTT
CACTCATTAGAACGTCAGCAAGACCGGTCAACTTCAATAACATTTCCTTt
tgctctttttctttttccgataatttttcttcttccttgtttttcttctt
cttccatcgGTCAGCAGTGCTCATCGGTTTCTTCTTGCCACCCAAACGTT
TCAAGGCCTTCAACACGTTTTCACCTTGATGgagcaaaaaaatgaaaaaa
gaccgtTAGTCGCATTTTCGTACTTGGTTTTAAAATATTCTGATTTTACA
CCCATGGAGCTTATCCAAATCCCTTGCCTCTCGATTCCGGATTaacaaaa
tcattgaaaataatttttgcctCAATGTAGATgacaaaattttaatattt
gtttaTAAATTGACCTACCAACCAGAATGATGCTTAGTGAAAGGTTTCAA
TAAAGGTCAATGGTTTCACCACGCTGATCAATAAAATCG Coding sequence (CDS) from alignment at sc0000054:534345..535633 >TCONS_00005700 ID=TCONS_00005700|Name=TCONS_00005700|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at sc0000054:534345..535633 (Clytia hemisphaerica)
TTACGTGTAAAGGTCAAAATCGATTCTTCTTGAGTTGTATAAACTACCTT
CTTGATTCTCCCTTCGACAATATACACCGTCCCCAAATTTCCCTTCTTCT
TGCCATTTTAACATCTGTGATGAAGGGAAAGGTCCTTTTAGTTCATTCTT
TTCGTCATCTTTTTCCTTATAAAACCATTGCACTTCATCACTGATGTTCA
CTTTTGGTTCGCTCTCCTTCTCCTGtgtttttgctgagtcagcataACTC
TTCTCCGTAGATTCACCTTTAAAAGCCGCCTCCAGGGCGTCGTCCTCATC
ATCAACCTCCGCGTCTGCAAACTGATCTTCTCCAGctttcttttcacttt
ctttgatctcgaaattcaatttctcaaaagttttttcGTAAATTTGAAAA
TCTCCTTCACTCATTAGAACGTCAGCAAGACCGGTCAACTTCAATAACAT
TTCCTTttgctctttttctttttccgataatttttcttcttccttgtttt
tcttcttcttccatcgGTCAGCAGTGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005700-exon-sc0000054-1491911889:534345..535633 | TCONS_00005700-exon-sc0000054-1491911889:534345..535633 | Clytia hemisphaerica | exon |
| TCONS_00005700-exon-sc0000054-1510915933:534345..535633 | TCONS_00005700-exon-sc0000054-1510915933:534345..535633 | Clytia hemisphaerica | exon |
| TCONS_00005700-exon-sc0000054-1575043694:534345..535633 | TCONS_00005700-exon-sc0000054-1575043694:534345..535633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:534345..535633 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003169 | GYF |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00005700 vs. Swiss-Prot (Human)
Match: CD2B2 (CD2 antigen cytoplasmic tail-binding protein 2 OS=Homo sapiens GN=CD2BP2 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.825e-18 Identity = 52/145 (35.86%), Postives = 74/145 (51.03%), Query Frame = 1
Query: 412 TGLADVLMSEGDFQIYEKTFEKLNFEIKESEKKAGXXXXXXXXXXXXXXXXXXXFKGESTEKSYADSAKTQEKESEPKVNISDEVQWFYKEKDDEKNELKGPFPSSQMLKWQEEGKFGDGVYCRRENQEGS-LYNSRRIDFDLYT 843
+GLAD +++ G+ +Y++T E+L +K G + F E E+ TQ E+E + + +V W YK ++ EL GPF S+QM W EG F DGVYCR+ + G YNS+RIDFDLYT
Sbjct: 203 SGLADQMVARGNLGVYQETRERLAMRLK------GLGCQTLGPHNPTPPPSLDMFAEELAEEELETPTPTQRGEAESRGDGLVDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRIDFDLYT 341
The following BLAST results are available for this feature:
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