TCONS_00005658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005658
Unique NameTCONS_00005658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005658 ID=TCONS_00005658|Name=TCONS_00005658|organism=Clytia hemisphaerica|type=transcript|length=1283bp
TTTCGATACTGAAACATATTGCACGACAGAAAAACTAGTTTGCACTTTAA
GATCAACAACCGGATTGAGGAAGTATAACTAAACGTGCATGATGAAAGTG
GTTCTCGTATTTTGTTGGGTGTTATTGGTTAAGGCATCAGTTGGAACAAC
CAATCAACAAAGACCTTCTATTGATTGTTGTGCTAGTTTAACTCAATATA
AGACTCTGTACACACCGCTAAAAACCCAATATCAAGAATGTAAGATTGAA
TCTGGTAACCTTAAAAACGAAGTAGGCACTCTGAAGGAAGTTTTGAGCTC
GACAATTTCCGATATCAAAGTTGCTCCGCAAAAAATCGAACCACCTACGC
CTGGCAAATTGGAATTGGTCCGTAAAAACATAATTGACAAGGCACAGAGA
GTAAAGTTCAATGATTTCCAGATACCAGGAGATGATTTCAAATTTGCTCT
AAGGAAACAAAGATCTATTGGAGGACCATGCACACAGAACCATGATGTAA
TCCTGGCAACCATTGGTGGCCTTGATGCAATACTCATTGGAGCAATGAAC
ACAGAATTTCTTAGTTACACTGACTCTCTTGGAGATATCGATTCGAATCT
TATTCACTCGTGTGCGGAATGTCGTTATCAAATCACAATACCTGGATATA
TTCCAGAGGTACACCATCACGTCATTTGTCCAAAAGAAACGAAACCATAC
TGTATGGGTGGCGTGGGAGAATGTGCGAAACTGGAAGTCGCAACACTAAT
TTACAACCCGACCAATACAGCACAACCAACTCGATACATTACGTTAAATA
AAGGCTGCTCTTGTCAACAGTATAAAGTATGGAATATTTTGGGTGATGGT
AATTAATGACGGAACTGTCGgacaaaaatctaattttaaaacaattaaGA
ATGCATACACACTTACTCGCATTGACAGAAAAATTATTGATGtaaacttt
tacaaaatcttatctaaaaaaacattccaaaatCACATCTTGCTTTTACT
TGCtctttataagcatatttttttggaaaacaggCTCAGTTACACTAAAG
CTATATTGTTTTAAATGAAGCTCAAATCACGCCCTTTGCAGCCCTTTGAA
ATGCTtattttttcgagaaaaaaaattggtttcttttgaaatggaaaaga
aaaattaaaatctcaaATACACAACCTATGAGCAATGACCAATAACCAAA
GCTCACTAATATGTTATTgattatcttcttttttttcataccAAATCCAG
TATTCAATGTGCTAATCAAAGTCTAATAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00005658-protein

>TCONS_00005658-protein ID=TCONS_00005658-protein|Name=TCONS_00005658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MMKVVLVFCWVLLVKASVGTTNQQRPSIDCCASLTQYKTLYTPLKTQYQE
CKIESGNLKNEVGTLKEVLSSTISDIKVAPQKIEPPTPGKLELVRKNIID
KAQRVKFNDFQIPGDDFKFALRKQRSIGGPCTQNHDVILATIGGLDAILI
GAMNTEFLSYTDSLGDIDSNLIHSCAECRYQITIPGYIPEVHHHVICPKE
TKPYCMGGVGECAKLEVATLIYNPTNTAQPTRYITLNKGCSCQQYKVWNI
LGDGN
Run BLAST on NCBI

transcript from alignment at sc0000054:524190..528760-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005658 ID=TCONS_00005658|Name=TCONS_00005658|organism=Clytia hemisphaerica|type=transcript|length=4571bp|location=Sequence derived from alignment at sc0000054:524190..528760- (Clytia hemisphaerica)
TTTCGATACTGAAACATATTGCACGACAGAAAAACTAGTTTGCACTTTAA
GATCAACAACCGGATTGAGGAAGTATAACTAAACGTGCATGATGGTGAGA
TTTTGAGTTTATATATTATTACAGTGAAGTCTCCATAACTCGAACACGCA
CGAGGAATACAAATTTGCTTTACTTATGGATAATTTGAGTATAAGGCATT
GTTAACTGAAGGGTAGGAAAAAACTTGTTCGAATTAAGGAGTCAACTGTA
ACTGGGTAGAATTTTTTTCTTTTTCTCAAGGAAAATCAAGGTAAAGAAAA
ACAATTCATGGGAGCAGTTTGAAACTATTTTAAGATCCGCCAGGAGTGAG
GTGGTGGATGATCTAGGCTTGAAAAGCAGATTTTTGTATGAACCTCTTCA
CAGAAGGCTGCATTAAAAAGTATACAGGTGAAATGCGAAGCGATTTAGAG
TACATTATTTAACATATATCTACTATTTGCTCACACAGCATTTTTAACCA
AAAAATTCAAAAGAAAGAACAACGCACACCCCTACCTCCAAATTTGAAAA
TAATTTTGTCGATTCTTATTTGTCAGCATAAGTTAAAATTTTGGCTTCNG
AAAATAATTTTGTCGATTCTTATTTGTCAGCATAAGTTAAAATTTTGGCT
TCGTATGTCCTGAAAAAAGTCTTACCCTTAAACTACCTTTTCTGCTCATA
GAAAGTGGTTCTCGTATTTTGTTGGGTGTTATTGGTTAAGGCATCAGTTG
GAACAACCAATCAACAAAGACCTTCTATTGATTGTTGTGCTAGTTTAACT
CAATATAAGACTCTGTACACACCGCTAAAAACCCAATATCAAGAATGTAA
GATTGAATCTGGTAACCTTAAAAACGAAGTAGGCACTCTGAAGGAAGTTT
TGAGCTCGACAATTTCCGATATCAAAGTTGCTCCGCAAAAAATCGAACCA
CCTACGCCTGGCAAATTGGAATTGGTCCGTAAAAACATAATTGACAAGGC
ACAGAGAGTAAAGTTCAATGATTTCCAGATACCAGGAGATGATTTCAAAT
TTGCTCTAAGGAAACAAAGATCTATTGGTAAGTCCACTTAAAATAATTTA
AAATATTTGAAAACAAACATTATTAAAAGAGCCGTGAGCAGATCGGATTA
AACGATTGAGTCTAAAAACCGACACATTTCCTGATTCAATTTCTAGCATG
GCTGGAAAAGCTCAGTTCGTAAAGCAGTGTATTGGCGACGTGAAAGTCGT
GAGTCGGAATCTAAATCACGTCCTCGGCTTAATAGTTTTCTGGTAGTGGC
ATTCCATGGAAAGTTCTGATTGTTAGTTTATGAATAGTGTTTATAAAAAT
ATAAGTTCTCTACTGAAACACTTTTCGCAAGTGAAGTCTCTCTTTAGAAA
AAGTTTTCTATAGCGAATTTTATACTTTAAAGGAGGACCATGCACACAGA
ACCATGATGTAATCCTGGCATCCATTGGTGGCCTTGATGCAATACTCATT
GGAGCAATGAACACAGAATTTCTTAGTTACACTGACTCTCTTGGAGATAT
CGATTCGAATCTTATTCACTCGTGTGCGGAATGTCGTTATCAAATCACAA
TACCTGGGTAAGAATGATTTTGGAACCAGTTAAAGGTTTCGTTTTTAAAT
AAGAGTGATATCGTTTGCTTACTCATCAATTTTTAAAAGCTTTTTCACAT
TGGATTGACACGGATATGGAGCAAGATTGGTCAGAAAGAGGAAAAACAAC
ATTTTTTGCTTATACCAGGATAAGCAAATACTTATAACAACAATAGGCAG
GCACTGTACTGATATGAAATATGTGCCTGAAACGGGAACACTTATGTAAA
AATAAAACCTTACTTTACCTGGTGTTGGTAAATATCTACAATATGATATT
ATTTTGCTTAGTTTTGCAAAATTTCGGATACATTTGACAGAAAGAGGTTC
TCAGATTCGAGCTTAACTTAGCCTGTTCTAAACTTTTTTTTCGTAGAAAA
AAGAACACGAAGTACAGTTTATTACGGTTGGACAAGATTCCGCGTCTGAG
CTCTAGTTTAGACGGCCGACTTTCTGCCCGGCCTATTCTAATTGTTAGAG
TAGGCAGAAAGAGGGCACAATATTGGTTGTTAAAATCTTTGCTCAGAAAT
GTTTGAAAGAACAAATTGCATTGACGTCAAAAGAGGGCCATGCATTGACT
TTATAGACAGCCCACTTTATATCCACTTTAATTCGCAATTAGAATAGGCA
GGGCGAAAAGTGGGCCGTCTAAACTAGAACTGAGACATTTTCTCGCAAGT
CTCTTTGTTACCTCTATGGTAGAGTTTTATTTTAAGCATGCAAATTCCTT
CTACTAAAGCGACGTTACTCTATCACCTCAATACAATAGTGTCTTTCGTT
TTTCAATAGAGTACTCCTACACCATAGTATAAGAAAGCTGCGGCTGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACCAGGAGATGATTTCAA
ATTTGCTCTAAGGAAACAAAGATCTATTGGTAAGTCCACTTAAAATAATT
TAAAATATTTGAAAACAAACATTATTAAAAGAGCCGTGAGCAGATCGGAT
TAAACGATTGAGTCTAAAAACCGACACATTTCCTGATTCAATTTCTAGCA
TGGCTGGAAAAGCTCAGTTCGTAAAGCAGTGTATTGGCGACGTGAAAGTC
GTGAGTCGGAATCTAAATCACGTCCTCGGCTTAATAGTTTTCTGGTAGTG
GCATTCCATGGAAAGTTCTGATTTTTCTATAGCGAATTTTATACTTTAAA
GGAGGACCATGCACACAGAACCATGATGTAATCCTGGCAACCATTGGTGG
CCTTGATGCAATACTCATTGGAGCAATGAACACAGAATTTCTTAGTTACA
CTGACTCTCTTGGAGATATCGATTCGAATCTTATTCACTCGTGTGCGGAA
TGTCGTTATCAAATCACAATACCTGGGTAAGAATGATTTTGGAACCAGGT
AAAGGTTTCGTTTTTAAATAAGAGTGATATCGTTTGCTTACTCATCAATT
TTTAAAAGCTTTTTCACATTGGATTGACACGGATATGGAGCAAGATTGGT
CAGAAAGAGGAAAAACAACATTTTTTGCTTATACCAGGATAAGCAAATAC
TTATAACAACAATAGGCAGGCACTGTACTGATATGAAATATGTGCCTGAA
ACGGGAACACTTATGTAAAAATAAAACCTTACTTTACCTGGTGTTGGTAA
ATATCTACAATATGATATTATTTTGCTTAGTTTTGCAAAATTTCGGATAC
ATTTGACAGAAAGAGGTTCTCAGATTCGAGCTTAACTTAGCCTGTTCTAA
ACTTTTTTTTCGTAGAAAAAAGAACACGAAGTACAGTTTATTACGGTTGG
ACAAGGTTCCGCGTCTGAGCTCTAGTTTAGACGGCCGACTTTCTGCCCGG
CCTATTCTAATTGTTAGAGTAGGCAGAAAGAGGGCACAATATTGGTTGTT
AAAATCTTTGCTCAGAAATGTTTGAAAGAACAAATTGCATTGACGTCAAA
AGAGGGCCATGCATTGACTTTATAGACAGCCCACTTTATATCCACTTTAA
TTCGCAATTAGAATAGGCAGGGCGAAAAGTGGGCCGTCTAAACTAGAACT
GAGACATTTTCTCGCAAGTCTCTTTGTTACCTCTATGGTAGAGTTTTATT
TTAAGCATGCAAATTCCTTCTACTAAAGCGACGTTACTCTATCACCTCAA
TACAATAGTGTCTTTCGTTTTTCAATAGAGTACTCCTACACCATCTGTTT
TCGATCAGAAAACATTGAGCCCGTGGTAGGAGTGGGGCAGGCTAAACTCA
ACGTCTCAACTCAGCAACCATTTATTGTTTCAGATATATTCCAGAGGTAC
ACCATCACGTCATTTGTCCAAAAGAAACGAAACCATACTGTATGGGTGGC
GTGGGAGAATGTGCGAAACTGGAAGTCGCAACACTAATTTACAACCCGAC
CAATACAGCACAACCAACTCGATACATTACGTTAAATAAAGGCTGCTCTT
GTCAACAGTATAAAGTATGGAATATTTTGGGTGATGGTAATTAATGACGG
AACTGTCGGACAAAAATCTAATTTTAAAACAATTAAGAATGCATACACAC
TTACTCGCATTGACAGAAAAATTATTGATGTAAACTTTTACAAAATCTTA
TCTAAAAAAACATTCCAAAATCACATCTTGCTTTTACTTGCTCTTTATAA
GCATATTTTTTTGGAAAACAGGCTCAGTTACACTAAAGCTATATTGTTTT
AAATGAAGCTCAAATCACGCCCTTTGCAGCCCTTTGAAATGCTTATTTTT
TCGAGAAAAAAAATTGGTTTCTTTTGAAATGGAAAAGAAAAATTAAAATC
TCAAATACACAACCTATGAGCAATGACCAATAACCAAAGCTCACTAATAT
GTTATTGATTATCTTCTTTTTTTTCATACCAAATCCAGTATTCAATGTGC
TAATCAAAGTCTAATAAAAAC

Coding sequence (CDS) from alignment at sc0000054:524190..528760-

>TCONS_00005658 ID=TCONS_00005658|Name=TCONS_00005658|organism=Clytia hemisphaerica|type=CDS|length=3072bp|location=Sequence derived from alignment at sc0000054:524190..528760- (Clytia hemisphaerica)
ATATATTCCAGAGGTACACCATCACGTCATTTGTCCAAAAGAAACGAAAC
CATACTGTATGGGTGGCGTGGGAGAATGTGCGAAACTGGAAGTCGCAACA
CTAATTTACAACCCGACCAATACAGCACAACCAACTCGATACATTACGTT
AAATAAAGGCTGCTCTTGTCAACAGTATAAAGTATGGAATATTTTGGGTG
ATGGTAATTAAGAGGACCATGCACACAGAACCATGATGTAATCCTGGCAA
CCATTGGTGGCCTTGATGCAATACTCATTGGAGCAATGAACACAGAATTT
CTTAGTTACACTGACTCTCTTGGAGATATCGATTCGAATCTTATTCACTC
GTGTGCGGAATGTCGTTATCAAATCACAATACCTGGAAAGTGGTTCTCGT
ATTTTGTTGGGTGTTATTGGTTAAGGCATCAGTTGGAACAACCAATCAAC
AAAGACCTTCTATTGATTGTTGTGCTAGTTTAACTCAATATAAGACTCTG
TACACACCGCTAAAAACCCAATATCAAGAATGTAAGATTGAATCTGGTAA
CCTTAAAAACGAAGTAGGCACTCTGAAGGAAGTTTTGAGCTCGACAATTT
CCGATATCAAAGTTGCTCCGCAAAAAATCGAACCACCTACGCCTGGCAAA
TTGGAATTGGTCCGTAAAAACATAATTGACAAGGCACAGAGAGTAAAGTT
CAATGATTTCCAGATACCAGGAGATGATTTCAAATTTGCTCTAAGGAAAC
AAAGATCTATTGATGATGATATATTCCAGAGGTACACCATCACGTCATTT
GTCCAAAAGAAACGAAACCATACTGTATGGGTGGCGTGGGAGAATGTGCG
AAACTGGAAGTCGCAACACTAATTTACAACCCGACCAATACAGCACAACC
AACTCGATACATTACGTTAAATAAAGGCTGCTCTTGTCAACAGTATAAAG
TATGGAATATTTTGGGTGATGGTAATTAAGAGGACCATGCACACAGAACC
ATGATGTAATCCTGGCAACCATTGGTGGCCTTGATGCAATACTCATTGGA
GCAATGAACACAGAATTTCTTAGTTACACTGACTCTCTTGGAGATATCGA
TTCGAATCTTATTCACTCGTGTGCGGAATGTCGTTATCAAATCACAATAC
CTGGAAAGTGGTTCTCGTATTTTGTTGGGTGTTATTGGTTAAGGCATCAG
TTGGAACAACCAATCAACAAAGACCTTCTATTGATTGTTGTGCTAGTTTA
ACTCAATATAAGACTCTGTACACACCGCTAAAAACCCAATATCAAGAATG
TAAGATTGAATCTGGTAACCTTAAAAACGAAGTAGGCACTCTGAAGGAAG
TTTTGAGCTCGACAATTTCCGATATCAAAGTTGCTCCGCAAAAAATCGAA
CCACCTACGCCTGGCAAATTGGAATTGGTCCGTAAAAACATAATTGACAA
GGCACAGAGAGTAAAGTTCAATGATTTCCAGATACCAGGAGATGATTTCA
AATTTGCTCTAAGGAAACAAAGATCTATTGATGATGATATATTCCAGAGG
TACACCATCACGTCATTTGTCCAAAAGAAACGAAACCATACTGTATGGGT
GGCGTGGGAGAATGTGCGAAACTGGAAGTCGCAACACTAATTTACAACCC
GACCAATACAGCACAACCAACTCGATACATTACGTTAAATAAAGGCTGCT
CTTGTCAACAGTATAAAGTATGGAATATTTTGGGTGATGGTAATTAAGAG
GACCATGCACACAGAACCATGATGTAATCCTGGCAACCATTGGTGGCCTT
GATGCAATACTCATTGGAGCAATGAACACAGAATTTCTTAGTTACACTGA
CTCTCTTGGAGATATCGATTCGAATCTTATTCACTCGTGTGCGGAATGTC
GTTATCAAATCACAATACCTGGAAAGTGGTTCTCGTATTTTGTTGGGTGT
TATTGGTTAAGGCATCAGTTGGAACAACCAATCAACAAAGACCTTCTATT
GATTGTTGTGCTAGTTTAACTCAATATAAGACTCTGTACACACCGCTAAA
AACCCAATATCAAGAATGTAAGATTGAATCTGGTAACCTTAAAAACGAAG
TAGGCACTCTGAAGGAAGTTTTGAGCTCGACAATTTCCGATATCAAAGTT
GCTCCGCAAAAAATCGAACCACCTACGCCTGGCAAATTGGAATTGGTCCG
TAAAAACATAATTGACAAGGCACAGAGAGTAAAGTTCAATGATTTCCAGA
TACCAGGAGATGATTTCAAATTTGCTCTAAGGAAACAAAGATCTATTGAT
GATGATATATTCCAGAGGTACACCATCACGTCATTTGTCCAAAAGAAACG
AAACCATACTGTATGGGTGGCGTGGGAGAATGTGCGAAACTGGAAGTCGC
AACACTAATTTACAACCCGACCAATACAGCACAACCAACTCGATACATTA
CGTTAAATAAAGGCTGCTCTTGTCAACAGTATAAAGTATGGAATATTTTG
GGTGATGGTAATTAAGAGGACCATGCACACAGAACCATGATGTAATCCTG
GCAACCATTGGTGGCCTTGATGCAATACTCATTGGAGCAATGAACACAGA
ATTTCTTAGTTACACTGACTCTCTTGGAGATATCGATTCGAATCTTATTC
ACTCGTGTGCGGAATGTCGTTATCAAATCACAATACCTGGAAAGTGGTTC
TCGTATTTTGTTGGGTGTTATTGGTTAAGGCATCAGTTGGAACAACCAAT
CAACAAAGACCTTCTATTGATTGTTGTGCTAGTTTAACTCAATATAAGAC
TCTGTACACACCGCTAAAAACCCAATATCAAGAATGTAAGATTGAATCTG
GTAACCTTAAAAACGAAGTAGGCACTCTGAAGGAAGTTTTGAGCTCGACA
ATTTCCGATATCAAAGTTGCTCCGCAAAAAATCGAACCACCTACGCCTGG
CAAATTGGAATTGGTCCGTAAAAACATAATTGACAAGGCACAGAGAGTAA
AGTTCAATGATTTCCAGATACCAGGAGATGATTTCAAATTTGCTCTAAGG
AAACAAAGATCTATTGATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003198XLOC_003198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005658-exon-sc0000054-1575043694:528667..528760TCONS_00005658-exon-sc0000054-1575043694:528667..528760Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1575043694:527684..528059TCONS_00005658-exon-sc0000054-1575043694:527684..528059Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1575043694:525735..525909TCONS_00005658-exon-sc0000054-1575043694:525735..525909Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1575043694:524190..524827TCONS_00005658-exon-sc0000054-1575043694:524190..524827Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1510915933:528667..528760TCONS_00005658-exon-sc0000054-1510915933:528667..528760Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1510915933:527684..528059TCONS_00005658-exon-sc0000054-1510915933:527684..528059Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1510915933:525735..525909TCONS_00005658-exon-sc0000054-1510915933:525735..525909Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1510915933:524190..524827TCONS_00005658-exon-sc0000054-1510915933:524190..524827Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1491911889:528667..528760TCONS_00005658-exon-sc0000054-1491911889:528667..528760Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1491911889:527684..528059TCONS_00005658-exon-sc0000054-1491911889:527684..528059Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1491911889:525735..525909TCONS_00005658-exon-sc0000054-1491911889:525735..525909Clytia hemisphaericaexon
TCONS_00005658-exon-sc0000054-1491911889:524190..524827TCONS_00005658-exon-sc0000054-1491911889:524190..524827Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005658-proteinTCONS_00005658-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:524190..528760 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0842702	0.0805316	0.149608	0.146368	0.0445472	0.0704036	0	0	0.0710129	0.263883	0	0.112247	14.4778	23.0436	3.05745	2.27464	0.867929	1.06752	0.456496	1.59358	0.0407386	0.0596126	2.27252	0.966283	1.06399	0.696364	0.181181	0.493277	0	0.0186776
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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