TCONS_00005629 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005629
Unique NameTCONS_00005629
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005629 ID=TCONS_00005629|Name=TCONS_00005629|organism=Clytia hemisphaerica|type=transcript|length=1026bp
TTGAAAGAAGGGAATATCTATGAGCTGGAGAATTTCTCAGCGTAGCCTTG
AATAACTTTAATGGCAACAGATGGAGCTGAAGATAAGTGTCGACTTTGTG
GTAAAAGAATTGATGGTGAAGTTGATAAGTGGTATGTTCCTTACCACTCC
AACTGTTTCAAATGCTCCAGTTGTAAAGTACCTTTAAATCCAAGGAATTA
TTTTTTAACCAACAAAAagcaattttattgttttaaacatTATGATCATG
ATGGCCCAGACAAGCATGGACATTTCTTCAGGGAACTTAAACAATTTCGT
AAATATTCTATCGAGAAATCAAAGACTTCGACAGTGAATGGGAAAACCTC
CCCTGTAAAAcaacattatcaaaaaaatgGACTCGTGAAATTAGATTGCA
AATGTTCAAGTGGAAAGTCTTCAGGTTATTGGTATGAGTGTACTTTCAGA
AATTGTCCTTCATCACAATGTTATCTTAAATCGAGAGACTTTAAACATTT
TCATGTGGCAACCTGGAAGATCACATCTGGTAAAAGCACAACACAAATTG
AACACAGTGAAGAAGAACTTTATGAGATGTGCTATCATGGACAGAGACAT
GCCAATTTTTATTCTGTAGATGAACGTATTGGTCCTATTGTATTGAGTTT
GAAGCATGAATCTATCATGAAAATCCCTTTTTACAGGATTCTTCTACGAT
CTTCATCACACATCACAGAAGGTTTAATCCCAACGACCTCATTCTGTTTA
AATGACTATGATGATAATGCAGTACTGGAAGTCATCAGTAGAGAATTGGA
CCTTACTTCAGACTTGAGACAATTCAATGATTCCATTCCACCTACCAAAT
TGCTCCTGTTGGATAAAgtGATGTTGAAAAGTGAATTCAAAATAGGTGTT
GTTTTCGTGGACAAAGATCAGCTCAAAGAGGAGCAATTTTTTACCAACAC
TACACACAGTGACGATTTCGAAGAATTCCTTACATACCTAGGCGAAAAGA
TATCATTGAAAGGATTCAATGGTTNT
Run BLAST on NCBI

transcript from alignment at sc0000054:240290..246830-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005629 ID=TCONS_00005629|Name=TCONS_00005629|organism=Clytia hemisphaerica|type=transcript|length=6541bp|location=Sequence derived from alignment at sc0000054:240290..246830- (Clytia hemisphaerica)
TTGAAAGAAGGGAATATCTATGAGCTGGAGAATTTCTCAGCGTAGCCTTG AAGTAAGCCTATTATGAAATCCAAAGTCTTTATTCCATTTACAGTCGAGG ATTATGCCCTAAATAAGAGAATACCCAAGTTAGAGGATTACCTTATTTAG GAGATTTTCAGTCTCTTATTTAAGAGAGCGTTACCTAAACTAGGAGAATT CTGTACGTTTCACAAATTTACTTCAGAGCAGACTATTTGCGCAATATGAA AATAAGATCACGTGAAAGATAACGTTTCCGTGATTCCGATGACCCAAAAA CCAAAATAAAATACCTTTTCATTCTTTTTCAAACTTCGAAAAACCATAAA TAGCCTCATTTGCATGTGATGACGTAATTTTTAAAATAATGAAGAAACAC CCTTGTCCTTTAAAACGCGTTTTTTCTAAAACCCCCTTATTTAGGAGAGA CAAGAGCGACTCACTTTCTGTTTGACCCGCGTTTTGACCGCGCTTAAACG CGTTTCTTAAATATGGCCCGATCTATATTATTACTTTTCACGAAATTCTC ATGATGTAGATCGGCCTTTAGATTGGTAGAACCTAACCATCCTAGGTCCA CGAAACAAAAGCAGAACTCAACCAAATTTTGCTAGAAGGGAGAAAAAAAC GTGCTGAGTCGATCTATGAAGTTCAAAACTTGCGCAAAATGATGAGAAGG CCAAAAATTAACGAAGAAAAAAAAGTCTCCTAGTTAAGAGAAAGAAATCT CCTACTTAAGAGACCTTCTCTTAAATAGAGTATATCTCTTATTTAGGGCA TAATCCTCGACTGATTTACTACGTGTCATGTATCTATCTCGCTCGGTTTC TCTCCACCACGGTGTTCCACCGTAGAAGCAGTAGGTAAAAATGCACAATT TAGTACGGTGGGAGGTTAGAGGAATGTAACTTTTTCAAATTTTTTTCTTT CCTTCTTTTAGAATGATTTAGATATTTGAACATAAATATGATATGATATC AATTTTAATTTTATGGATCTCTCCTCAGATAGTGGAAGTAATTTGATTTG TGAAGAGTCTTTACGTCACATAGAACAAAAGAAAATAGCAAAAGAACAAG GATTTTCCCATAGCCACCATTTCGCAACCATTGGGAATCGCAATTTTACG GAAATGGGAATCCTCATATCAAATATTAAAGCATCTTCTGAAAATTTCAT TCTTCCCCATAAAAATGCAAAAATGAAAAACGAAGAAGCTTCGTTTTCTG ATCATCTTTTTACCATGACAGGCTAGCTCTAAAGCTCTAAAACAGCATCC AATAACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTAAAA AGTGTATATACTTACAAACATCAATATGTCTGATCTAACAAAATTTATAG CAGCACTGTCATCATTGACAATAAAACAAACAATATTCTGTCAAGAGCCT TGTAAACATTCCAACAACTTCCATCGAAATGATCTATCACAGCTAGATCT ACCATTTTTAGCGCGGTCCGAGGTTTGAGCCGAGAATGCTCGCAGAACTT TCATTCCTAGAACTTTTGCAAAAAAAAAGGAAAAATAGAAAAGTTGTATT TTTTATTATTGCTCTATTCACATACTGAATTTGAAAGATCTACTATGTGG CGTTTTTTTGCAAACTTCAAAAATTGAATGAAGTTTTTATAAATTGATTT TTATTTTTAGCTTATGTGGATTTGGCAAAGTTGGTGAGTATGGCAAATTT GGAAGTCAATTGAATTGGCTGTAGGTAACTAATTACTGACCTATCAAGAA TCAAGGATATCTTCCTTGCAATGTATTTATTGCAATTATTTGCGGCTGCA ACCAATTGCATCATATACAATGGATCAAAGATAAAATTTACTAAATACCA GTCAAAGAATTCCCTCAATTTCAGTATACCACCATCACAGTAGTTTTCAT TTGTGTTTAGCCTACAGGGTAATAACAAGTATATACGGGGTGCTGGTCCA CAAAATCATGAACAAACATCGATTATCCAAAATGTAGAAAAAAGCTTGTC TTTATTAAAAGAATAAAAATATTTCATCTGTGAGTTAAAAAATATGATTA ATTATGTACAAAAATCGCCTCTTTTCTGTCTGAATTTTGAACTCTGTTTC TCGTATACTAACTGTGGTTGTGTTATGAAAAATGTAAAAAAGTGAAGTAC AGCAGTTTATACCTCAATTGCAGTAAAAAATACTACACACTAGTCAAGGG AATTCCTCGACTGGATTAAAGTACCCTGTATATTTATTTGCATTAGGTAA ATGCATTTGAGCTTTATATACCCTGGACCAAGTTTCTCAATCCTGTCCAA GGAAAATCTTTGATAATTATGTTTTTTGAAAAATTGTATCCTAATGGCAG CAACCACCTAATAGTGGTGTAAATGTATCGAGAGCACTAGGTCTAGCTCC CTCAAATACTTTTGATGATGTAGCGCCGTTAGACCTTAATTTTTAACACT GCAATGACTTCTTTGCTGGTCCCCCTTTAAAAAAGCTTGGTCCAGGGACC AAGGTTCCACCATAACTTTAGTTCAATTTTCTTGAGACAGTTTTTTCCAA AAAAATAATTTATTAATTAACATTTTCTGTCTGAAACCTTGCTCAGATAA GAGAATGAAGAAGATTTAACTAAGAAAAATCTGAGTATGAATCTCTTGAA TCAGCTTGAATGGGGAAAAGTTGGAAATGATACCAAGATTTAGCTCATTA AAGTCGCCATTCATATATATGCAACAAGTAAGGTAAAGTGTAATTTACTT TGAAAAAGAAATATTTGATAGTCTACTGTTCTTTAAAATACTTTTTTAGT TGGAGCAATTCTCAGCTAATCCAGATGACCCAATTTCCTCATTTGTGTAT TTGAAATATCTTTGAAATACCAACCAGACAGATGTTCTAATGGAGTTAAT TGCCTTCAAAAATTATCATCTACCAGAAATTGTCATAAAATTGTGTCCTC CCCCCCCCTTCAGTCCTGACAATTGGCGCCGGCATACGGCAAATGCCGAG GCAAAAGCTGAATTAAATTGGATTATAGTGTGTTTGCGTCGGCAAAAAAA ATGCCAAGGCAAATTTTTCAAAAGACTTTTACTAAAAATGATAACTGCCG AAACAATCGAAGAACTGCAATGTAGCAGTGTAACGTCCCCCTACCTCCCT TTAAATTGGGAGAAATGCCGAGGCAGAATCCTATTCTGCCGAGGCAAACA GCAAATTTAGCCATTTGCCTCGGCAAAAAAATGCCGAGGCAAAAAAAATT GAATTGCCAGGGCTGAACATTAATCTTAAAATCGCTTTTATTGTGCCAGG GCTCAAAGCCAAAAGAAAAATAAGCGGGCGGAACCGCATTAAGCAGGACA CTCCCTCATTTAAGCTTGTCGTTCCGAGTTCCGCTCGCATACCTTAGATG TCCCGCATTTTCGAGAAAACTCAGAAATTCGTAGAACTCTTGGAAAAAAT ATAGAAATGCTACTAAAAGTAAAAATATGTTTCCACAAGCACAAACTCAC TTCTTTGTTTTTTCTCTTCGCTCCGTAGCGGTCCGTCCAATTGCGTNNNN NNNTTAAAGATTAACCAATTTTTGTTCTATTTTGTCTACTATTCCTTTTG CAGCAAAATTTTACGTTTGTGTCAGGTTGAAATTTGAGAAATTTACACAG GTATATGGGGGGAACACTGATATTTTCAGAATTTTCTGGGGGGAAAGCAA AAAAGAGGGGGGAAACTAAAAAACTGAAAAGTCATAGGGGGAAAAAAAAG AGAGGGGAGATTCAAAAAAATCTTGTTTGGTGGGGGGAACAAACCCTGGA GGACACTATGAAATTGTAGCATTGCTGGTAGCAGGCTGGTGTTCTTAGCT AACTGCATTAGAAATTAGCTGTTACAAGTTAGATTGTTAAATTTATTGTT CCAGAACTGGTATTTTAACCGAAAAAAAAAAATTTATTGAATGTTTTTAG AAAGAAAGAGGTATTGGTCATTCATAAGCTTGGCATTTGAAATTGTGGTA TTGAAGTTATTAGTCGGCACTTTTTCCACTCTATTTTCCAGCTACTTTTA TTACACTGGGCTACACCAAACAAATAACCGGCTGATTGCCAAAAAAAATA AAGCCTTTTTTTTAATTCAACACATTTTTGGTAATGTTTTCAGGGAATAT TTCTCTTATATTTTTGAGTGGGAAATGAGGAATCAGACAGAATCAGAAGG TCACTTTAGTTTTGATTTTTATTAATTTTTCTTAATATCAAAGCTAACTT GGATTTTGATAAGGCTGTTCCTTAACTAAAAGTTACTTTAATAAAAGATT AAAAACATAAATTTCTCTTTTGATTGCAGTCAGTGTTATTGTCCATCAGT ATACAGTAAGAATTTAAGCTTATTAAAAGAAAGATGCAGGCAAAGAAGAA AATTGTGCAATACCTTTAATCCTTTTTGATAAAACACCATTTAACTTTCA TCTAATGTGTTAATAATATTCAAATTGAACCCTTACAAAAAGTAATTGTC GCTCAAAATTACAAGTTGAATACAACTTTATTACTTCATTAAAAGTGTTG CATTATTTTTATTCTTCGAAATCTAAATTTTTGTTATTTTATAACTATCT AGCCTTTTTGAGCTGCTTTGGTTTATTCCCTCCAGGAGCAACCTACTGTT CATTGATCATTCTACTTTTCTTTTTCTGTAATTATCAAAAAAGAAAGGAA TTTCTAATTGAAACTGTCAACAATGGATATCAATTCAACTTGCTATTAAT TTTTTTCAAAGGGGGGATATCACTTAATGGGCTTTGTCTTTTTTAATATT GTTTTGTTGTGAAAGGAAAGCTCTTTTAAAATCGACTTTTTGAATACATT AAGTTTGTAAATAAAAGAAAGACAGCAGTCATCAGTTAGAAGGTTGAGTT TAAAAATATGATGATTTAATTGAAATGTAGAGGCATATTTTTGAACCTTT GGTTAGGATGAAGTACTTACATGAAATCAAAGTTAATACTGACACTTCTA ATGTATTTACAGTAACTTTAATGGCAACAGATGGAGCTGAAGATAAGTGT CGACTTTGTGGTAAAAGAATTGATGGTGAAGTTGATAAGTGGTATGTTCC TTACCACTCCAACTGTTTCAAATGCTCCAGTTGTAAAGTACCTTTAAATC CAAGGAATTATTTTTTAACCAACAAAAAGCAATTTTATTGTTTTAAACAT TATGATCATGATGGCCCAGACAAGCATGGACATTTCTTCAGGGAACTTAA ACAATTTCGTAAATATTCTATCGAGAAATCAAAGACTTCGACAGTGAATG GGAAAACCTCCCCTGTAAAACAACATTATCAAAAAAATGGACTCGTGAAA TTAGATTGCAAATGTTCAAGTGGAAAGTCTTCAGGTTATTGGTATGAGTG TACTTTCAGAAATTGTCCTTCATCACAATGTTATCTTAAATCGAGAGACT TTAAACATTTTCATGTGGCAACCTGGAAGATCACATCTGGTAAAAGCACA ACACAAATTGAACACAGTGAAGAAGAACTTTATGAGATGTGCTATCATGG ACAGAGACATGCCAATTTTTATTCTGTAGATGAACGTATTGGTCCTATTG TATTGAGTTTGAAGCATGAATCTATCATGAAAATCCCTTTTTACAGGTAA TTAATTCCCCTTACAGATGTTTTGAGTCACAAACTAAGGGTCTACCCTTC TCTAGCTGATAGATATCTTCAAAAGTTTTTTTATTCAGAAGACAGATAAT GCACTCAGTGGCATAGATTGTGGTGTTCCTGGAGTATCAACCATACACCT ATCTACCTGTACAGGACCAAGAAAGACTGATCTGATAAAATTTCTATATC AGTTTTGGTCAAAACTATCAGTTTTGGTCAAAACTGATATAGAAATATAG TCTATCTCTTGAATTTTTTCTTTTTGATTCTTTTTTTTTCTTCATTTAAA TAGGATTCTTCTACGATCTTCATCACACATCACAGAAGGTTTAATCCCAA CGACCTCATTCTGTTTAAATGACTATGATGATAATGCAGTACTGGAAGTC ATCAGTAGAGAATTGGACCTTACTTCAGACTTGAGACAATTCAATGATTC CATTCCACCTACCAAATTGCTCCTGTTGGATAAAGTAAGAAACAGATTGA TCATTATAGTCCATTGATATGATGGTATTTGATGAGCACTCAGCCAATTG GTCAATATAGTCCAATGGTATATGTAATAGTATTTGCACTCAACCCAATA TTCCAAAATAAGATTGGTATATTTTATTCTGCTAAATCTGACTTTGCAAT CTTAAATTGTAAAAATAATTTCTTTTTTCCAGGTGATGTTGAAAAGTGAA TTCAAAATAGGTGTTGTTTTCGTGGACAAAGATCAGCTCAAAGAGGAGCA ATTTTTTACCAACACTACACACAGTGACGATTTCGAAGAATTCCTTACAT ACCTAGGCGAAAAGATATCATTGAAAGGATTCAATGGTTNT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003189XLOC_003189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005629-exon-sc0000054-1575043694:246779..246830TCONS_00005629-exon-sc0000054-1575043694:246779..246830Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1575043694:241135..241768TCONS_00005629-exon-sc0000054-1575043694:241135..241768Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1575043694:240647..240827TCONS_00005629-exon-sc0000054-1575043694:240647..240827Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1575043694:240290..240448TCONS_00005629-exon-sc0000054-1575043694:240290..240448Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1510915933:246779..246830TCONS_00005629-exon-sc0000054-1510915933:246779..246830Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1510915933:241135..241768TCONS_00005629-exon-sc0000054-1510915933:241135..241768Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1510915933:240647..240827TCONS_00005629-exon-sc0000054-1510915933:240647..240827Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1510915933:240290..240448TCONS_00005629-exon-sc0000054-1510915933:240290..240448Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1491911889:246779..246830TCONS_00005629-exon-sc0000054-1491911889:246779..246830Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1491911889:241135..241768TCONS_00005629-exon-sc0000054-1491911889:241135..241768Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1491911889:240647..240827TCONS_00005629-exon-sc0000054-1491911889:240647..240827Clytia hemisphaericaexon
TCONS_00005629-exon-sc0000054-1491911889:240290..240448TCONS_00005629-exon-sc0000054-1491911889:240290..240448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:240290..246830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.775385 0 0.426213 1.37624e-09 1.11934e-09 2.20345e-06 0 0 0 0 0 0 0 0 0.000528924 0 0 2.67453e-09 0 0 2.50547 0 0.00566482 6.63455 1.46488e-06 2.64522e-07 0 0
Blast
BLAST of TCONS_00005629 vs. Swiss-Prot (Human)
Match: SI1L2 (Signal-induced proliferation-associated 1-like protein 2 OS=Homo sapiens GN=SIPA1L2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 9.274e-16
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  571 YEMCYHGQRHANFYSVDERIGPIVLSLKHESIMKIP-------FYRILLRSS------SHITEGLIPTTS--FCLNDYDDNAVLEVISRELDLTSDLRQFNDSIPPTKLLL-LDKVMLKSEFKIGVVFVDKDQLKEEQFFTNTTHSDDFEEFLTYLGEKISLKGFN 1020
            Y   ++G+ H N++ +DE +GP+ +S++ E +            YR+  R+S        I E  IP+T+            VLE +  EL +   LRQ ++S   ++ LL LD+  L  + KIG+++    Q  EE+ + N T    FEEFL  LG+++ LKGF+
Sbjct:  487 YRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDAKEKEGSQFNYRVAFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQC-LRQASNSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFS 651          
The following BLAST results are available for this feature:
BLAST of TCONS_00005629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SI1L29.274e-1631.33Signal-induced proliferation-associated 1-like pro... [more]
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