TCONS_00005627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005627
Unique NameTCONS_00005627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005627 ID=TCONS_00005627|Name=TCONS_00005627|organism=Clytia hemisphaerica|type=transcript|length=2616bp
taaatccattttttcaaaaattgagttatgaccataccgatgctttacac
cccattttttatcgaatttttggcttaaatccatcaaaaaccaacctaaa
gtgNTCGTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCAT
GATGACCAGAAGCTCCAAAGGAAAAGACATATTGGGAATGATATTGTTTG
TATAATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGATCAAAT
CAAATTTCCTTCATGTTTTCATCATAATTCAACCGCAGATTTTACATGGA
GAACTATTTTACAAGGTCGATGTTGCTTCGAGAGATTTTGTCCAAAATTA
TGGACCGCCACTTCCCAAGAATAAACTGTTCAAAAATGATTCATCTTTCC
AACGATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTTACCGT
TCACCCAAGTTCGCTTCCATGCAGGAACGTACTCGTCGGCAACTTTTAGA
AGAGTTAGTGCATGATCAAGCTTGTAAGGAAGTTCAGCCGTCCCTCAAat
tttcgaagaatccttttCAACGGCTTCTTCCCCTTAGACACAGTTTCACT
CGATCGTCGCCACATACTCCGTCCTTGCAAAGGTCGATGAGTTTTGCAGC
CGACCATATTGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTA
AACGCTCTTTAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTC
GTTGGTAAAGAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCTCTTTTGGC
TATGAAAAGCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCGTATCAAT
CTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCTCAC
TACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTGGAA
ACGCAACAACAACACGACAGCTAACAACGGTTCTACAACATCAACAACGA
CAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCTTCT
CCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAAGCT
TCAAGTCACAGAATTTGACATGGAGGAGTTCTCAGCGTTGATCGAATACA
TCCAAACAGGTTCGTGTGTGATCACACCAGAAACTGTGGTGGGTTTGGCG
TGTGCTGCTGAGTATTACCAAGTGGACGAGCTGATCGACCTTTGTGAACG
CTCTTGTCAACAAATGTGTGATATAAGAAACCTACCAGTTCTATTGACGT
CAATCAGACAACATATTTTGCGTTACTCCATCGCTATCAAGCTTGAACAA
TATGTGAAGTCGTTCACGGAATCTTGCGATAACgagttatttgatttttt
cgacaTTTCGTCTCTGTCCCATGAAGTGTTCGACTGTTTGCTGACATCGA
CATCTGGGGTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCAC
GAAAGACTTTCTACATTTCTGAACGCCAATGAAAGCGTGCGTTTGAAAGA
CTTACTACTGCAACACGCAGACATTGATAATTACATTGAAGACAAGTGAG
ATTCATCATAACAATATTGTGACGGTTCCAAAACCTGGTCCATGAATCTA
TGACCATGCGGTGactattatttattattttgacCATCCGAATTTCGTGA
AAAACGGGAACGGTATTAAACCCATGCTATTACTCCTATTTTACCTCCTT
TTTCATTTAGAGAACAAGCTTTCGATACCTGATTGATTGAAGATTAAATC
AAAAGTTTCCAAAGGAAATCGCTCAGTTTTTTGCACTTTTATTCTGCTTT
TAAAAGGGTCCCgcgtttttaatatttttatccgTCCTTGCTTTGCTTTT
ATTTAAAACATGTTGTCGTTTTGctatatgaaaatatatttttatgatCA
GACGTCCTTTTAATGTTAGTATCTCTTTACGGCGCTCACATGTTATATTA
AAATTCGTGATAATGtgtaaatttcataaaatatataCATGAAGCAAAAT
AAAGGCCAATTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGACGAAAACTA
CGCATACTTATATCGGGAATTATCTTTACTCCAGGTAGTATTCTTCTTCA
ATAGTCGGAAATGCTCTTCTATGATTCGAAAAAAAGTCATTATTGACAGT
AACGTTGGCTAGCAGATATTTTAAGCTTTTATTGCTTTTCTTTGGGGTTC
ATAATTCATGCCAATACTATAGCAATCAAATGCATCTAAAACGAGGCATC
TGGAGAAGAAGAACAAAATGTAAAGTCAAATAATAGTAAATTAGCTGCTC
TCTGTATTTCTTTATATTGTTGTCTATTCACCCTTGGCTTTTTACCCTTA
GTATTTATTATGGCAGTCAGGAGTAATACCTTAAACATGGCGTATACCTT
GTTCAAGTAAGAATtcaaaatttctattgtttgatACTTCCTATTTAGGA
AGTAGTGGGAATATTTTCTAAACTAGGAAAAAGGGCACTCTCTCGTCTAT
ACCATTGGAAAGAGCACGAGAAACTGAATTCCCAtggtgatttttagaaa
attccacAGCCGGAAT
Run BLAST on NCBI

transcript from alignment at sc0000054:226329..240203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005627 ID=TCONS_00005627|Name=TCONS_00005627|organism=Clytia hemisphaerica|type=transcript|length=13875bp|location=Sequence derived from alignment at sc0000054:226329..240203- (Clytia hemisphaerica)
TAAATCCATTTTTTCAAAAATTGAGTTATGACCATACCGATGCTTTACAC
CCCATTTTTTATCGAATTTTTGGCTTAAATCCATCAAAAACCAACCTAAA
GTGNTCGTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCAT
GATGACCAGAAGGTAATATATTAAGATTGAATTCGATTAAAAACCCAGCT
TCTGTGGATTGAGTCGTCAATAAGACAGTTTTTTGGTTCTATGTCTTCAC
TTCAGAATTGCCTACAAAATTTCTTAAATTTTTGAACTAAAGAGATTTTA
ATGAACTTTAGAGATTTTAATGAACTTTTTAATGAATGAATTTCTGAATG
TTGTTAACAAAGGTGTATGGGTAGAGATTTCAATTAATTTTCTTTTAGAC
ATTCATAGCTCTTTGCTAATCAAAAGTACTAATCAATAAGACAGTATTAC
CAAAGTATGAAATTCCAACCAAAGCCTTGTTATGTTGTGTTTAGTCACGT
CGAAAAAAAGTTTGGCAGACATGTGAAGTATATTTCATTTCCTTCCAAAG
GAAAATGATTGATATTATTTGAACAGGATACCTAGCGAAGGAAATTGTTT
AGAAATTTTAATATGATATTGCCATTTCATTTACTATACATTACGAGCAA
TAAAAGGTAGTCTGACTTTCTCTTTGACTAATTTTGCAGTCTCAAAGTTT
TTAAAAATAGTTAAGATTTACTCGTTGTCATGGTTCCATACTTGAGACAA
CCAGTTCTTTTTCTGTCTTACTTCCTGTGTTTTGAGGCATTTCTCCTTAT
TGTATATTGGTGTTTTGAATTTCCACAACAGCAGAATTCTTAAAATCCTT
GATGTTGGTGACATCACTAATACCCATTCACCAGACTTCCTTTTTAAAAA
CTAGCCATTTCATCTCGAGTAGGAAGAATTCTCAAGGGTTTTTCTTTGTT
TTCGACAGTCATTTTCTTTTTGACACGTAAAATAGCTGCTATGTCAACTC
CAGTTATATAGCTTAAAAGTTTTTAGTACTTTTGAGAGCACGCTGAAGAA
AAATATCAATATCAAATATCCCTTGTCAATTTAACAACAGCTTCAGTTTC
TGAGTTTGTTGAGTATCTTATGGTTAAGAAGAAGGAAGTAGACGAAAGAG
GAATCAGATATGTGAGGTTTCCATGATTCATTTATATCACTGAGAAAAAT
TTGTCTGCTCTTGTACGTGGTTTATAGTTCAACCATACAATGATTAAGTT
TGTTGATTGCTTTGTGTGCTCAGATAATTAACATACATGTACTGTGCCAC
ATGCCAAGACATGCTGTTTGATGATTGCAAAAAATGCCATCAAGAGAAGA
AAAAAATCATCATTTTTCATCATAATTGCAGTGATTGAGTGCTCATGACT
TTTTTAAGAGTTAATTGATTGGTTAGCTTGTTTCGAAAAAGAATAACCTG
TTTATCTATACATTTTAATCATTGTCTTTTGACAAATTGCCTTTTGTGCG
TTGATCTATTTATTTTTGTAAAAGTAATTATGCAAACACTGCAATAATGT
TTCTAAAATCATTTATCTGTGGTGATTAGCTCTTTTAAACGACCACATTA
GTGAGTTTTGAACCTAGGAAATATCAAGTGGCGTGCAGTGATTTTCCTGT
ATACAAACTCCTAACCATTTCAATCTGTCAAAGATCACTTTCTATGATTC
TCTTCAGTAATTCGAACATTCAAATTATATTTCTAGTTCGACTTTAACAA
AAAACATAGTATTCTAAAGACCAATGAAAATAATCCTTTCAATAGTCTAA
TTGAGATCCATTTATTGATTTTACAGTTTCTTATCTACATACTAGCCCTG
TTTCTAAATTGTTGAAAGTTCGTATTTTCCAAGAAAACCTTAACAAAAGC
CATTTCGTTTTTTCTGTTCACCAGCTCCAAAGGAAAAGACATATTGGGAA
TGATATTGTTTGTATAATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAA
ACTCGATCAAATCAAATTTCCTTCATGTTTTCATCATAATTCAACCGCAG
ATTTTACATGGAGAACTATTTTACAAGGTATCAATGTTATTTTCTTTTCA
CTCTTTATTAAAGACATTAGATGGTAAGGTGGACCGATTGCTTGTCGTTT
ATTCACCTCATCACTCTGTAGTAGAAGGAGCTATTCGAAATGTACTTTTA
CTTATATATAAATTCGAATGTACACTGTACAATTGAATTCTTGAAACATG
AAACAATTCACTGATATTTCTTTCACTCTCAGGTCGATGTTGCTTCGAGA
GATTTTGTCCAAAATTATGGACCGCCACTTCCCAAGAATAAACTGTTCAA
AAATGTACGTTTGGCTTTAAATTTCACAGCCTCTCCCGCTGTTCACGTTC
TTTGTTCCTAAAATTTGTTGTAAGATTATTTGACAAGTTCACCTCCCTCT
TGTAAAAATCTTTTCAAAGGTTCCTTTAATATTGTATTGATGTAGGTAAT
ATTTTGAGCAAAGTCTCTTCCTTTTCTTGGAGGCTCATCAAGAAGGAAAT
ACTGCTTCCAGCGTTAGCCTTAGATCCTGAGGATCATTTTTTTTAGGATT
CATCTTTCCAACGATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCG
AGTTACCGTTCACCCAAGTTCGCTTCCATGCAGGTAAAGAAGTCTTTATT
TCTGCTTCACCCTGTCTTGGTGATATGGAAGGTGTTAGAACTGATCAATG
AGTCCAATTAATGTTCATTGAGTTGGACACTTGTAGGTAAACGTTTGACT
GGTTCAATAGTTGTATCAAGACGAAAAAAACGGGTTGAAAAGAATCAAAT
GGGATTGTATTCGCTGGTTATGACAATCGCATATTATATTATTCTTGTTT
TTGTTCAGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAGTGCATGAT
CAAGCTTGTAAGGAAGTTCAGCCGTCCCTCAAATTTTCGAAGAATCCTTT
TCAACGGCTTCTTCCCCTTAGGTAAGCTTACGTATTTCGTCATGTCAATA
TATTATAATCAGTTAAAATAAGTGGAAACGAGTGGAATTTATAGTATTAA
CCTGCATGTTAGAACCAAATAGATTCATTACAACAAAGAACTCCTTTTAG
GAATAAGTTCACCAAGCTTCTTTCAATAGAAGAGAATGTAAAAATCTTGT
TTTACTTACTGTTTTGTAAACTTAACAGAAATTTGTGTGTTTTAACCATC
ATCAAAGATGGTTTTTAAAAGTATTTGATAATTGATTTTGAATTTTTCTA
CATTACACAGACACAGTTTCACTCGATCGTCGCCACATACTCCGTCCTTG
CAAAGGTATCAGGACAAAACATGCCATTCATGCATTCATTTCATTCACTC
ATTCGCTCGCTCTAACTAACCCACACTCTAATCTATATAGCTCAAATCAA
CGCTATTATACATAGTATCTGAAATAGGGAGGTTTTATTTTCAGATGAAT
TTTCGGATGTTTTCTGAGGTTTATTTCTGTGGAAACTTAATTGTTTTAGT
TTTTTTGGTTTATCTATCGTGTGTTCATCACATCATATTGTTTTACTCAT
ACTGTAGCTTTCTCTTCTCAATAACTAGGTCGATGAGTTTTGCAGCCGAC
CATATTGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTAAACG
CTCTTTAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTCGTTG
GTAAGTTTCCACAAAATCTCCTGATCCCTGCGATTGATGATAAGTAAGTC
TGCGACCGCAGTCGAAAGCTATCTACACGTTTTTTTTTTTATAAGGAACA
CGTTTATAAGGAACTCGAGGCTGAAAGTAGTCTAAAAAATAAGGAATTGT
TAAGGAACTGCTCAGGCTAAGAATAAGAAAACAAGCTCTAAGGAACAGTA
AAAGTAAGAGTTTTCACTTGAACTAGCTATGTAAATAAGGAACTCAAAAG
GAACTTTGAGGCTGAAATTTTCTGTAAAAATAAGGGAACTCCAGGCTCAG
AGCAAAGTTAAGGTTCCTTATATAAAAAAAAACGTGTAACCGAAGGTAGG
GGAGGGTGTCACTCTTTTTCCCTGGATTGCTCCACTTACCCTAGCCTGGT
TAACCAAGCCAGTTTTTACAAGGCCAAGATACGGCTGAAGGCAATATAGC
GTTATCGGTGCTTTAATGATTTTTATGATGTACGGAATTTTAAGTTTGCC
TTGAAAAACTGGCTTGGGCGAAGCGCGCGTTCATATTTTGAACGCAGAAG
TCGGTGAGACTCGGCGAGCATTTGGCCTCTTCTAATTGGCCATTATAGAC
CATGTGATAAGAAACGAAATTTTTCGTTTGTTTTGAAAACGCTTTTCACT
TCTCAACGAAAGACTTTTTGAACATATTTTATTCTGTACTTTTTGCGTAA
AAAGAAAGATATGTTTTTCTCTCTCTCTCTCTTTGAAAAACCTTTATTTA
ACTGTATGAAAGAGAAGTTGAGTAAATAGGGAGGAGGGTGTATTTATTTA
ACAAATTCCTTATTTTTATATTTTTGCTTTTTTATGCGAATGAGTTATGG
GAAACCTTTTGTTAAAAAATATGTGTTGAACTAATTATACAAATTTATGT
GCATTTACAAATACGTGCCCGGGAAAATTTGAAATTTCGTTTTTGTCAGT
TGATAATAAACCGAGTTTACTTGTACTAAGCCAGATATTCAGTCACAACT
TACCATCAGATTTTACTAAGTGACTGAATCAATCTGGATTAGATTTCTAG
GCTACACTTACCCTTGATCCTTCTCTTAATTGCTGAGCATCAAGCAGAGA
GACATCAAGTACCATTTTTGGAATCTTTAGTATGACCTGGGGTTTGAACC
CACAACCTCGCGCATCGTAGTCGGATGCTCTACCACTGCACTGGTCCCTG
CGATTAGTTAGATATGAAAAGTGAGTTTTTCCACCAATCTTCGTTGCTCA
ATCAGATTTACATTTCCTAGTTTAAAGGTCCCAAAAAAGGGCCACATCAG
CTGTGCCTTTCGTAATATCAAGGGACTCAAAATGAAATTTATCAAGCTCC
TCCCGAATTTGAAATCTGTTTTCCTGAGGGAGAGGCCGCCTCTCTAGCTT
TATATTCTTTTTCCAGGTAAAGAGAGGGGAGGCTCAGTTCCCGCTGTAAA
AGCTCTTTTGGCTATGAAAAGCAGGTAAGATAGACATTGTCGCCACTGTT
CATCGTATTTCGATTTTATGATTGATACAGCCATTGCGTATTTTCAATGG
TAAGGAAAATTACTCTTAGGTTCCAAATAAATGGGGGAGGGGCTGGAATA
AACGGGGGTGGGGAAAATTTTCGAGATTTTAATAACCGGGGGGGGNAAAA
AGACAAGGCGTGCACGGGGTGAAGTTCCCAAAGAGAAGGCGTGGTAAAGG
TTAAGGTGTGTGTCCAGGGCTCTTTTGAACTTATCGATAGAAATGTTTTT
GAGGTTTCTGATGCTCTTTGGCATAACATTAAAAAGTTTTGCACCTTGCA
CTGCAAGTGTGCTGTCTCTAAATTTTGATGTTTGATTCTTTTTCAGTGGT
TTTGATACCATTTACAGTAGGTACAATCTTTTCCATCACCTTCCAGACAT
ACATTATTCTGTAGCGTTCTCTTCGCCTTTGAAGTGACACTCCCAATTGT
TTGGGGTGCCATTTATCTTTCGTAAGAAGGACTTTTGAATATCTTCAAGT
CTCTGAATGAGACCAACTGCATTTGGGCTCCACAGAATGGAGCAATATTC
TAATATTGGTATCACCAATGATTTATATACCATACAATTTAAAGATCGTG
AAGAAAAAGTTCTCAGGATCCAAGATGTTAAGTTTTTAGCCTTTTCGATT
ACTGAAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCATCAGGATTCC
AAGGTTTTTCACAACATCTTTGTTTTCAATCTCAACACCAGATGGTGATG
TATAGCTTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAACGCAAGAGT
TCAAATTTTATATCATTTAGCTTCATATTGTTGTCATCCGTCCATTTATA
TATTCTATCAAGATCGTTTTGAAGTAGGACAGCATCTTCTAGAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAGTGACACCATTCA
CTAGCACTGATTGTTTTCTCTCTGTTAGGAAGGACTTTAGCCACTGTAAT
AATTTTCCATCTATTCCTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCATTCACTAGCACTGATTGTTTTCTCTCTGTTAGGATG
GACTTTAGCCACTGTAATAATTTTCCATCTACTCCTAGTTTCTTTATTTT
TCGTAGTACAATTGAATGGTCTACTTTTTCAAAAGCCTTTGAAAAATCTA
GGTACACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTATCAGG
TCATATTGTTCCAAAGGCTGACTCAAACATGAACGCCCGCTTCTGAATCC
ATGTTGATTGGGATTGAACAGATTATTTTCATCCGTGTGCTTTACAATAT
GTGCTCTGAGTACTTTTTCAAATATCTTGATGACATGGGATGTTAGGGCT
ACTGGTCTATAATTTGATGCCAGTGATCTGCTACCTCCTTTGTAGATTGG
TGTGATTGTGCATCTTTTAAGTTCGTCTGGGACAATCCCTTTGTCCAAAC
TTTGTCTCCAGAGGATACAAAGAGGAATAGAAAGTTCTTCTTTGCATTGT
TTGAGAAAGATTGCAGGGAAACCATCGGGACCTGGTGCTGCAGTTTGGGA
CAGATCGTTGATTGCTTTTATTAAATCATCTTCTGTACTACTACCGACTG
TGCCCGGACTTAGAGATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAA
CTCTGCTTAACCTTTTTCAACTTTCAGAGTGTTTAACGAGATGTTTTTCC
CTGGTTCGTATCAATCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCG
CGCGTTTCTCCTCACTACCTTTCGCAACACCTCCGTAGCAGCAAACGACT
GTCAGACTTTTGGAAACGCAACAACAACACGACAGCTAACAACGGTTCTA
CAACATCAACAACGACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAA
AACAATAACCCTTCTCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCA
GCTGTCCTCTAAGGTAAGCTTGCTATAGCTTTAAGTTACATTCACTATTC
ATGTTTTGCCCATTTCGACTGTTCATTTTGTTTCACTTATGTACGCTTGC
CACCTTTTAGAGTCATTTCGCTTCTACATTGTTATATCTTATCATAATTA
GATTCTCATATGTGATCTAGACATAAAAATAACCCAGCTATAAAAATCTA
TTTTTTAACTTTCCTTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGA
GTTCTCAGCGTTGATCGAATACATCCAAACAGGTTCGTGTGTGATCACAC
CAGAAACTGTGGTGGGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGAC
GAGCTGATCGACCTTTGTGAACGCTCTTGTCAACAAATGTGTGATATAAG
AAACGTAAGTCGCCTTGATCACGGTAATCATCGATTTGATGTAATGTGAA
AAACAATATTTTAGAGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAA
AGTGGCGCACGAAACTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGT
AAAAGTGACAATAGAACACCCTTTCGATGTGGATTTGTGATACTTTTCAG
ATTTGTTTGCCTTTTTCTCAGTCTTTCTTATTATTAAATTCGCTTAGCGA
AAGTATTACGATAGCCTTCCGTGTATGTATGTATGTGGCGAGACATTTTT
TGGGGCGCAAATTATGGCGTGGGCGTTTGGCTGCGGGCGTACTACGAGCA
ATATTCTAAAGATGGACTCACTCACAAAGATAAAAAATGATAAAAACAGG
GATTTTCTTAATAAATAAAATACGCCAGGCTAGTGCAAGAAGTGTAACCA
AGTTTTTGTAAACATTCATCGTGAGAACTTTTTAAATGGCTGCTTGATTA
TATTCAGATATTGCACAAGCTTTTGTGCTTTTGAAAGTTGCAGCTGCTGT
ATAAATTTTAATCATGTTTTCTGGTCCTTTGTAGAGTGTTTAAAGAGGTT
TAATATTTGTTTACTACTAAGTATTTTATGTTTGTGTAGTGTTAGTGAAT
GCACCAACAAATTGATCATGCTTAATAGTATATATAAGGAGTTAATATTC
CACAACAAACAACAACATTATTAACCCTCTCTTCTCTTCTTCTCCAAAAC
TACAAACAGCAAAGGTATGATTTTTTTTTCTATTTTTCACCAGATAGTTA
TGTGTTAATAGTGAAACCAGTTGTGACAAATAGTCAGTTTTAGCAAGTAC
CGTGAGATTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCA
AATGAAAGACCTGGCTGGTCATTAAAATACAACTACGCAGCTCCGCTCAN
CTTTCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCA
ATCTAACGGTACCGTGAAGTCGGGTAACTTGCATGGATGGAGGCTAACTT
TTATTGCGTAGGCATCAAATGACTGACCAATCAAAGCAACAAAATTTCAA
AACAAATGAACTCCACTTGCAGCTTTAGCCTACCATTTTTGTTTTGATTT
AACTTTGTATTTTAATGACCAAACGGGTCATTCATTTGGCAAGCTACCCG
ATCTCACGGTATTTCTTAGAAATCGTGTCAATTGTGAATTGAAACTCAGC
AATCATTTTTGTATAATCGAAACGACCCTGCCTAGACACTGCCGTACAGT
GTCATTGTACCATGATTTACGGTGGGTAAGGTGGGGTGTACAGTACAGCA
GATTTAAAATTAACCTATTTTCGCCGCCGTAAAAAGGACATTTAGATCCA
GCCCCACCGTACACCACCGCACAATGTACAGCGGTCCCTCGTTAATGATG
ACAGTTTTTTATCTGATGAAGTTTGATTGGTGTTCGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCATTCACTAGCACTGATTGTTTTCTCTCT
GTTAGGATGGACTTTAGCCACTGTAATAATTTTCCATCTACTCCTAGTTT
CTTTATTTTTCGTAGTACAATTGAATGGTCTACTTTTTCAAAAGCCTTTG
AAAAATCTAGGTACACAACATCCGCATTAGCATCTTCGTCCAATATATTT
AGTATCAGGTCATATTGTTCCAAAGGCTGACTCAAACATGAACGCCCGCT
TCTGAATCCATTATTCCTTATTAGGTCTGGAAAATTTTTCGAAAAATCAA
CAAGCAGGGGGAGTACTAAGAGTACGGATTGTTCCCCGACTGTGCCCGGA
CTTAGAGATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAACTCTGCTT
AACCTTTTTCAACTTTCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCG
TATCAATCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTC
TCCTCACTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGACT
TTTGGAAACGCAACAACAACACGACAGCTAACAACGGTTCTACAACATCA
ACAACGACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAATAA
CCCTTCTCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCT
CTAAGGTAAGCTTGCTATAGCTTTAAGTTACATTCACTATTCATGTTTTG
CCCATTTCGACTGTTCATTTTGTTTCACTTATGTACGCTTGCCACCTTTT
AGAGTCATTTCGCTTCTACATTGTTATATCTTATCATAATTAGATTCTCA
TATGTGATCTAGACATAAAAATAACCCAGCTATAAAAATCTATTTTTTAA
CTTTCCTTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGAGTTCTCAG
CGTTGATCGAATACATCCAAACAGGTTCGTGTGTGATCACACCAGAAACT
GTGGTGGGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGACGAGCTGAT
CGACCTTTGTGAACGCTCTTGTCAACAAATGTGTGATATAAGAAACGTAA
GTCGCCTTGATCACGGTAATCATCGATTTGATGTAATGTGAAAAACAATA
TTTTAGAGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAAAGTGGCGC
ACGAAACTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGTAAAAGTGA
CAATAGAACACCCTTTCGATGTGGATTTGTGATACTTTTCAGATTTGTTT
GCCTTTTTCTCAGTCTTTCTTATTATTCGTTTTTAACTAATTTAGTCTAA
TAAAATTTATATTTATTTTAATGTATATCTCTTGGTTCAAATATATTAGG
GAAATTGCAGTGTAAAAAAATAGGACATGGCTATTGTTTTGACATACAAC
TAACTGTTCTCGACACTGAATTGAAGTTTCATGCTTCATGTTTTTCATTG
TTCTTCTAGCTACCAGTTCTATTGACGTCAATCAGACAACATATTTTGCG
TTACTCCATCGCTATCAAGCTTGAACAATATGTAAGTGTCTGTCATACAG
TAGTTGCTCCCTTTCTCACAAATGCCCTTATTATTCGTCCAAATTTAAGG
AACAAATGAATTTTAAAAGATTCGAATCTGAAATCGGCCAGCTATGCTTT
CGTGTTTGTCACGGTTATTTTAGACATCCAGTCTGAATCAAACGCTAATT
AAGAATCAATTTATCTTTCACTTACAGGTGAAGTCGTTCACGGAATCTTG
CGATAACGAGTTATTTGATTTTTTCGACATTTCGTCTCTGTCCCATGAAG
TGTTCGACTGTTTGCTGACATCGACATCTGGGGTAAGTTAGTTTTCACCC
TCTTAATTCCACGTCATGTGATTATTTTGAAGGGCTTGTAATAAAAGTTT
CTTTTGCCGTTAGAGCTCATGTTGCGGATTAAAACCCTGTCATTTCAATT
TCTACTTTATTTTCATTATTGATGTTTGGCGATAGGCTCATCTCTTCTTC
ATGCTTAATTTCAGCTTCTAACGCTTCCAAAACGAACTGTAGTTAAATTT
GTATTTTCGTGTAAAAAAATCAGTATTGAATTCATCCAATTTATCAAAAA
AAAGTTGATTTACTTCTCTTTCAAAGAAAAGGAGGTGATGATATTTATAC
AATAAGTGTAGAGCCCTGAACCAATTACTGAAGTTTATCAAGAGTAATTT
ATTTTCTTCAGGTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGG
CACGAAAGACTTTCTACATTTCGTAAGTATCCAACTTCAATTTTTCCTTT
GTTACTACGATCAAAGCACATATTATTTACACGTATTCGACCTTGATTTT
GTGTTGCTTTTGTTTGTGCTTCAAAGGGTTTCCAAACATTGAACTGTGAG
GAATTAATACACATTTTTGGGCTGGAGTTGCTAAAGATTTTCATGATTTT
AGCCAAAAAGTTGTTTATGCATTTTGAGCCAAAATTGCTTAGTGGCTCCA
AAAATCTTCACTTATTACTTCATTTTATGCCCAAAATACCTCAAACTAGG
TAGGCAATTTGATGCCAATTTAGGCAAAATATTTTTGATTTTCAAGGTAA
TATTGGTTGCTTTTTAGTTCATACTCAGTATGGGCTATGGTTGATAAGCC
AAGTTGCTTCATTCTTTGGCCATTTTCAGGGCTGATGAAAAACTGAGTAT
ATTTATGACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCG
TTTGAAAGACTTACTACTGCAACACGCAGACATCGATTCCANCTGTGTTT
ATTTATGACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCG
TTTGAAAGACTTACTACTGCAACACGCAGACATTGATAATTACATTGAAG
ACAAGTGAGATTCATCATAACAATATTGTGACGGTTCCAAAACCTGGTCC
ATGAATCTATGACCATGCGGTGACTATTATTTATTATTTTGACCATCCGA
ATTTCGTGAAAAACGGGAACGGTATTAAACCCATGCTATTACTCCTATTT
TACCTCCTTTTTCATTTAGAGAACAAGCTTTCGATACCTGATTGATTGAA
GATTAAATCAAAAGTTTCCAAAGGAAATCGCTCAGTTTTTTGCACTTTTA
TTCTGCTTTTAAAAGGGTCCCGCGTTTTTAATATTTTTATCCGTCCTTGC
TTTGCTTTTATTTAAAACATGTTGTCGTTTTGCTATATGAAAATATATTT
TTATGATCAGACGTCCTTTTAATGTTAGTATCTCTTTACGGCGCTCACAT
GTTATATTAAAATTCGTGATAATGTGTAAATTTCATAAAATATATACATG
AAGCAAAATAAAGGCCAATTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGA
CGAAAACTACGCATACTTATATCGGGAATTATCTTTACTCCAGGTAGTAT
TCTTCTTCAATAGTCGGAAATGCTCTTCTATGATTCGAAAAAAAGTCATT
ATTGACAGTAACGTTGGCTAGCAGATATTTTAAGCTTTTATTGCTTTTCT
TTGGGGTTCATAATTCATGCCAATACTATAGCAATCAAATGCATCTAAAA
CGAGGCATCTGGAGAAGAAGAACAAAATGTAAAGTCAAATAATAGTAAAT
TAGCTGCTCTCTGTATTTCTTTATATTGTTGTCTATTCACCCTTGGCTTT
TTACCCTTAGTATTTATTATGGCAGTCAGGAGTAATACCTTAAACATGGC
GTATACCTTGTTCAAGTAAGAATTCAAAATTTCTATTGTTTGATACTTCC
TATTTAGGAAGTAGTGGGAATATTTTCTAAACTAGGAAAAAGGGCACTCT
CTCGTCTATACCATTGGAAAGAGCACGAGAAACTGAATTCCCATGGTGAT
TTTTAGAAAATTCCACAGCCGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003188XLOC_003188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005627-exon-sc0000054-1575043694:240042..240203TCONS_00005627-exon-sc0000054-1575043694:240042..240203Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:238127..238279TCONS_00005627-exon-sc0000054-1575043694:238127..238279Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:237850..237921TCONS_00005627-exon-sc0000054-1575043694:237850..237921Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:237521..237607TCONS_00005627-exon-sc0000054-1575043694:237521..237607Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:237183..237295TCONS_00005627-exon-sc0000054-1575043694:237183..237295Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:236849..236893TCONS_00005627-exon-sc0000054-1575043694:236849..236893Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:236454..236575TCONS_00005627-exon-sc0000054-1575043694:236454..236575Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:234980..235037TCONS_00005627-exon-sc0000054-1575043694:234980..235037Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:229599..229884TCONS_00005627-exon-sc0000054-1575043694:229599..229884Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:229208..229390TCONS_00005627-exon-sc0000054-1575043694:229208..229390Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:228723..228794TCONS_00005627-exon-sc0000054-1575043694:228723..228794Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:228422..228526TCONS_00005627-exon-sc0000054-1575043694:228422..228526Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:227982..228042TCONS_00005627-exon-sc0000054-1575043694:227982..228042Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1575043694:226329..227425TCONS_00005627-exon-sc0000054-1575043694:226329..227425Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:240042..240203TCONS_00005627-exon-sc0000054-1510915933:240042..240203Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:238127..238279TCONS_00005627-exon-sc0000054-1510915933:238127..238279Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:237850..237921TCONS_00005627-exon-sc0000054-1510915933:237850..237921Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:237521..237607TCONS_00005627-exon-sc0000054-1510915933:237521..237607Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:237183..237295TCONS_00005627-exon-sc0000054-1510915933:237183..237295Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:236849..236893TCONS_00005627-exon-sc0000054-1510915933:236849..236893Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:236454..236575TCONS_00005627-exon-sc0000054-1510915933:236454..236575Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:234980..235037TCONS_00005627-exon-sc0000054-1510915933:234980..235037Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:229599..229884TCONS_00005627-exon-sc0000054-1510915933:229599..229884Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:229208..229390TCONS_00005627-exon-sc0000054-1510915933:229208..229390Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:228723..228794TCONS_00005627-exon-sc0000054-1510915933:228723..228794Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:228422..228526TCONS_00005627-exon-sc0000054-1510915933:228422..228526Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:227982..228042TCONS_00005627-exon-sc0000054-1510915933:227982..228042Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1510915933:226329..227425TCONS_00005627-exon-sc0000054-1510915933:226329..227425Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:240042..240203TCONS_00005627-exon-sc0000054-1491911889:240042..240203Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:238127..238279TCONS_00005627-exon-sc0000054-1491911889:238127..238279Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:237850..237921TCONS_00005627-exon-sc0000054-1491911889:237850..237921Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:237521..237607TCONS_00005627-exon-sc0000054-1491911889:237521..237607Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:237183..237295TCONS_00005627-exon-sc0000054-1491911889:237183..237295Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:236849..236893TCONS_00005627-exon-sc0000054-1491911889:236849..236893Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:236454..236575TCONS_00005627-exon-sc0000054-1491911889:236454..236575Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:234980..235037TCONS_00005627-exon-sc0000054-1491911889:234980..235037Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:229599..229884TCONS_00005627-exon-sc0000054-1491911889:229599..229884Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:229208..229390TCONS_00005627-exon-sc0000054-1491911889:229208..229390Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:228723..228794TCONS_00005627-exon-sc0000054-1491911889:228723..228794Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:228422..228526TCONS_00005627-exon-sc0000054-1491911889:228422..228526Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:227982..228042TCONS_00005627-exon-sc0000054-1491911889:227982..228042Clytia hemisphaericaexon
TCONS_00005627-exon-sc0000054-1491911889:226329..227425TCONS_00005627-exon-sc0000054-1491911889:226329..227425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:226329..240203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161976	0.105096	0.876437	9.1023e-06	2.44238	1.61404	1.79732	1.77247	1.71253	1.14008	1.9976	0.622291	7.34372	5.84171	2.00969	2.45452	0.526631	0.597685	0.929924	4.13799	2.08475e-07	1.92458	1.53976	1.6892	0.515938	0.442573	1.98895	6.34253e-05	1.35681	1.14614e-06
Blast
[Close]
BLAST of TCONS_00005627 vs. Swiss-Prot (Human)
Match: RPGP1 (Rap1 GTPase-activating protein 1 OS=Homo sapiens GN=RAP1GAP PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 4.556e-32
Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 1 
Query:  109 MMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFLHVFIIIQPQILHGE-LFYKVDVASRDFVQNYGPPLPKNKLFKNDSSFQRWLYAKIINGERASYRSPKFASMQERTRRQLLEEL-----VHDQA 522
            +MFHVST LP  E D Q+LQRKRHIGNDIV ++F      F P+ I SNFLH ++++Q +    +   YKV V +RD V  +GPPLP   +F+    FQ +L  K+IN E A Y++ KFA ++ERTR  LLE L     +H Q+
Sbjct:  264 IMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQS 407
The following BLAST results are available for this feature:
BLAST of TCONS_00005627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGP14.556e-3247.22Rap1 GTPase-activating protein 1 OS=Homo sapiens G... [more]
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