TCONS_00005624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005624
Unique NameTCONS_00005624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005624 ID=TCONS_00005624|Name=TCONS_00005624|organism=Clytia hemisphaerica|type=transcript|length=2567bp
tccattttttcaaaaattgagttatgaccataccgatgctttacacccca
ttttttatcgaatttttggcttaaatccatcaaaaaccaacctaaagtgN
TCGTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATG
ACCAGAAGCTCCAAAGGAAAAGACATATTGGGAATGATATTGTTTGTATA
ATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGATCAAATCAAA
TTTCCTTCATGTTTTCATCATAATTCAACCGCAGATTTTACATGGAGAAC
TATTTTACAAGGTCGATGTTGCTTCGAGAGATTTTGTCCAAAATTATGGA
CCGCCACTTCCCAAGAATAAACTGTTCAAAAATGATTCATCTTTCCAACG
ATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTTACCGTTCAC
CCAAGTTCGCTTCCATGCAGGAACGTACTCGTCGGCAACTTTTAGAAGAG
TTAGTGCATGATCAAGCTTGTAAGGAAGTTCAGCCGTCCCTCAAattttc
gaagaatccttttCAACGGCTTCTTCCCCTTAGGTCGATGAGTTTTGCAG
CCGACCATATTGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTT
AAACGCTCTTTAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCT
CGTTGGTAAAGAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCTCTTTTGG
CTATGAAAAGCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCGTATCAA
TCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCTCA
CTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTGGA
AACGCAACAACAACACGACAGCTAACAACGGTTCTACAACATCAACAACG
ACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCTTC
TCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAAGC
TTCAAGTCACAGAATTTGACATGGAGGAGTTCTCAGCGTTGATCGAATAC
ATCCAAACAGGTTCGTGTGTGATCACACCAGAAACTGTGGTGGGTTTGGC
GTGTGCTGCTGAGTATTACCAAGTGGACGAGCTGATCGACCTTTGTGAAC
GCTCTTGTCAACAAATGTGTGATATAAGAAACCTACCAGTTCTATTGACG
TCAATCAGACAACATATTTTGCGTTACTCCATCGCTATCAAGCTTGAACA
ATATGTGAAGTCGTTCACGGAATCTTGCGATAACgagttatttgattttt
tcgacaTTTCGTCTCTGTCCCATGAAGTGTTCGACTGTTTGCTGACATCG
ACATCTGGGGTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCA
CGAAAGACTTTCTACATTTCTGAACGCCAATGAAAGCGTGCGTTTGAAAG
ACTTACTACTGCAACACGCAGACATTGATAATTACATTGAAGACAAGTGA
GATTCATCATAACAATATTGTGACGGTTCCAAAACCTGGTCCATGAATCT
ATGACCATGCGGTGactattatttattattttgacCATCCGAATTTCGTG
AAAAACGGGAACGGTATTAAACCCATGCTATTACTCCTATTTTACCTCCT
TTTTCATTTAGAGAACAAGCTTTCGATACCTGATTGATTGAAGATTAAAT
CAAAAGTTTCCAAAGGAAATCGCTCAGTTTTTTGCACTTTTATTCTGCTT
TTAAAAGGGTCCCgcgtttttaatatttttatccgTCCTTGCTTTGCTTT
TATTTAAAACATGTTGTCGTTTTGctatatgaaaatatatttttatgatC
AGACGTCCTTTTAATGTTAGTATCTCTTTACGGCGCTCACATGTTATATT
AAAATTCGTGATAATGtgtaaatttcataaaatatataCATGAAGCAAAA
TAAAGGCCAATTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGACGAAAACT
ACGCATACTTATATCGGGAATTATCTTTACTCCAGGTAGTATTCTTCTTC
AATAGTCGGAAATGCTCTTCTATGATTCGAAAAAAAGTCATTATTGACAG
TAACGTTGGCTAGCAGATATTTTAAGCTTTTATTGCTTTTCTTTGGGGTT
CATAATTCATGCCAATACTATAGCAATCAAATGCATCTAAAACGAGGCAT
CTGGAGAAGAAGAACAAAATGTAAAGTCAAATAATAGTAAATTAGCTGCT
CTCTGTATTTCTTTATATTGTTGTCTATTCACCCTTGGCTTTTTACCCTT
AGTATTTATTATGGCAGTCAGGAGTAATACCTTAAACATGGCGTATACCT
TGTTCAAGTAAGAATtcaaaatttctattgtttgatACTTCCTATTTAGG
AAGTAGTGGGAATATTTTCTAAACTAGGAAAAAGGGCACTCTCTCGTCTA
TACCATTGGAAAGAGCACGAGAAACTGAATTCCCAtggtgatttttagaa
aattccacAGCCGGAAT
Run BLAST on NCBI

transcript from alignment at sc0000054:226329..240199-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005624 ID=TCONS_00005624|Name=TCONS_00005624|organism=Clytia hemisphaerica|type=transcript|length=13871bp|location=Sequence derived from alignment at sc0000054:226329..240199- (Clytia hemisphaerica)
TCCATTTTTTCAAAAATTGAGTTATGACCATACCGATGCTTTACACCCCA
TTTTTTATCGAATTTTTGGCTTAAATCCATCAAAAACCAACCTAAAGTGN
TCGTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATG
ACCAGAAGGTAATATATTAAGATTGAATTCGATTAAAAACCCAGCTTCTG
TGGATTGAGTCGTCAATAAGACAGTTTTTTGGTTCTATGTCTTCACTTCA
GAATTGCCTACAAAATTTCTTAAATTTTTGAACTAAAGAGATTTTAATGA
ACTTTAGAGATTTTAATGAACTTTTTAATGAATGAATTTCTGAATGTTGT
TAACAAAGGTGTATGGGTAGAGATTTCAATTAATTTTCTTTTAGACATTC
ATAGCTCTTTGCTAATCAAAAGTACTAATCAATAAGACAGTATTACCAAA
GTATGAAATTCCAACCAAAGCCTTGTTATGTTGTGTTTAGTCACGTCGAA
AAAAAGTTTGGCAGACATGTGAAGTATATTTCATTTCCTTCCAAAGGAAA
ATGATTGATATTATTTGAACAGGATACCTAGCGAAGGAAATTGTTTAGAA
ATTTTAATATGATATTGCCATTTCATTTACTATACATTACGAGCAATAAA
AGGTAGTCTGACTTTCTCTTTGACTAATTTTGCAGTCTCAAAGTTTTTAA
AAATAGTTAAGATTTACTCGTTGTCATGGTTCCATACTTGAGACAACCAG
TTCTTTTTCTGTCTTACTTCCTGTGTTTTGAGGCATTTCTCCTTATTGTA
TATTGGTGTTTTGAATTTCCACAACAGCAGAATTCTTAAAATCCTTGATG
TTGGTGACATCACTAATACCCATTCACCAGACTTCCTTTTTAAAAACTAG
CCATTTCATCTCGAGTAGGAAGAATTCTCAAGGGTTTTTCTTTGTTTTCG
ACAGTCATTTTCTTTTTGACACGTAAAATAGCTGCTATGTCAACTCCAGT
TATATAGCTTAAAAGTTTTTAGTACTTTTGAGAGCACGCTGAAGAAAAAT
ATCAATATCAAATATCCCTTGTCAATTTAACAACAGCTTCAGTTTCTGAG
TTTGTTGAGTATCTTATGGTTAAGAAGAAGGAAGTAGACGAAAGAGGAAT
CAGATATGTGAGGTTTCCATGATTCATTTATATCACTGAGAAAAATTTGT
CTGCTCTTGTACGTGGTTTATAGTTCAACCATACAATGATTAAGTTTGTT
GATTGCTTTGTGTGCTCAGATAATTAACATACATGTACTGTGCCACATGC
CAAGACATGCTGTTTGATGATTGCAAAAAATGCCATCAAGAGAAGAAAAA
AATCATCATTTTTCATCATAATTGCAGTGATTGAGTGCTCATGACTTTTT
TAAGAGTTAATTGATTGGTTAGCTTGTTTCGAAAAAGAATAACCTGTTTA
TCTATACATTTTAATCATTGTCTTTTGACAAATTGCCTTTTGTGCGTTGA
TCTATTTATTTTTGTAAAAGTAATTATGCAAACACTGCAATAATGTTTCT
AAAATCATTTATCTGTGGTGATTAGCTCTTTTAAACGACCACATTAGTGA
GTTTTGAACCTAGGAAATATCAAGTGGCGTGCAGTGATTTTCCTGTATAC
AAACTCCTAACCATTTCAATCTGTCAAAGATCACTTTCTATGATTCTCTT
CAGTAATTCGAACATTCAAATTATATTTCTAGTTCGACTTTAACAAAAAA
CATAGTATTCTAAAGACCAATGAAAATAATCCTTTCAATAGTCTAATTGA
GATCCATTTATTGATTTTACAGTTTCTTATCTACATACTAGCCCTGTTTC
TAAATTGTTGAAAGTTCGTATTTTCCAAGAAAACCTTAACAAAAGCCATT
TCGTTTTTTCTGTTCACCAGCTCCAAAGGAAAAGACATATTGGGAATGAT
ATTGTTTGTATAATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTC
GATCAAATCAAATTTCCTTCATGTTTTCATCATAATTCAACCGCAGATTT
TACATGGAGAACTATTTTACAAGGTATCAATGTTATTTTCTTTTCACTCT
TTATTAAAGACATTAGATGGTAAGGTGGACCGATTGCTTGTCGTTTATTC
ACCTCATCACTCTGTAGTAGAAGGAGCTATTCGAAATGTACTTTTACTTA
TATATAAATTCGAATGTACACTGTACAATTGAATTCTTGAAACATGAAAC
AATTCACTGATATTTCTTTCACTCTCAGGTCGATGTTGCTTCGAGAGATT
TTGTCCAAAATTATGGACCGCCACTTCCCAAGAATAAACTGTTCAAAAAT
GTACGTTTGGCTTTAAATTTCACAGCCTCTCCCGCTGTTCACGTTCTTTG
TTCCTAAAATTTGTTGTAAGATTATTTGACAAGTTCACCTCCCTCTTGTA
AAAATCTTTTCAAAGGTTCCTTTAATATTGTATTGATGTAGGTAATATTT
TGAGCAAAGTCTCTTCCTTTTCTTGGAGGCTCATCAAGAAGGAAATACTG
CTTCCAGCGTTAGCCTTAGATCCTGAGGATCATTTTTTTTAGGATTCATC
TTTCCAACGATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTT
ACCGTTCACCCAAGTTCGCTTCCATGCAGGTAAAGAAGTCTTTATTTCTG
CTTCACCCTGTCTTGGTGATATGGAAGGTGTTAGAACTGATCAATGAGTC
CAATTAATGTTCATTGAGTTGGACACTTGTAGGTAAACGTTTGACTGGTT
CAATAGTTGTATCAAGACGAAAAAAACGGGTTGAAAAGAATCAAATGGGA
TTGTATTCGCTGGTTATGACAATCGCATATTATATTATTCTTGTTTTTGT
TCAGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAGTGCATGATCAAG
CTTGTAAGGAAGTTCAGCCGTCCCTCAAATTTTCGAAGAATCCTTTTCAA
CGGCTTCTTCCCCTTAGGTAAGCTTACGTATTTCGTCATGTCAATATATT
ATAATCAGTTAAAATAAGTGGAAACGAGTGGAATTTATAGTATTAACCTG
CATGTTAGAACCAAATAGATTCATTACAACAAAGAACTCCTTTTAGGAAT
AAGTTCACCAAGCTTCTTTCAATAGAAGAGAATGTAAAAATCTTGTTTTA
CTTACTGTTTTGTAAACTTAACAGAAATTTGTGTGTTTTAACCATCATCA
AAGATGGTTTTTAAAAGTATTTGATAATTGATTTTGAATTTTTCTACATT
ACACAGACACAGTTTCACTCGATCGTCGCCACATACTCCGTCCTTGCAAA
GGTATCAGGACAAAACATGCCATTCATGCATTCATTTCATTCACTCATTC
GCTCGCTCTAACTAACCCACACTCTAATCTATATAGCTCAAATCAACGCT
ATTATACATAGTATCTGAAATAGGGAGGTTTTATTTTCAGATGAATTTTC
GGATGTTTTCTGAGGTTTATTTCTGTGGAAACTTAATTGTTTTAGTTTTT
TTGGTTTATCTATCGTGTGTTCATCACATCATATTGTTTTACTCATACTG
TAGCTTTCTCTTCTCAATAACTAGGTCGATGAGTTTTGCAGCCGACCATA
TTGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTAAACGCTCT
TTAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTCGTTGGTAA
GTTTCCACAAAATCTCCTGATCCCTGCGATTGATGATAAGTAAGTCTGCG
ACCGCAGTCGAAAGCTATCTACACGTTTTTTTTTTTATAAGGAACACGTT
TATAAGGAACTCGAGGCTGAAAGTAGTCTAAAAAATAAGGAATTGTTAAG
GAACTGCTCAGGCTAAGAATAAGAAAACAAGCTCTAAGGAACAGTAAAAG
TAAGAGTTTTCACTTGAACTAGCTATGTAAATAAGGAACTCAAAAGGAAC
TTTGAGGCTGAAATTTTCTGTAAAAATAAGGGAACTCCAGGCTCAGAGCA
AAGTTAAGGTTCCTTATATAAAAAAAAACGTGTAACCGAAGGTAGGGGAG
GGTGTCACTCTTTTTCCCTGGATTGCTCCACTTACCCTAGCCTGGTTAAC
CAAGCCAGTTTTTACAAGGCCAAGATACGGCTGAAGGCAATATAGCGTTA
TCGGTGCTTTAATGATTTTTATGATGTACGGAATTTTAAGTTTGCCTTGA
AAAACTGGCTTGGGCGAAGCGCGCGTTCATATTTTGAACGCAGAAGTCGG
TGAGACTCGGCGAGCATTTGGCCTCTTCTAATTGGCCATTATAGACCATG
TGATAAGAAACGAAATTTTTCGTTTGTTTTGAAAACGCTTTTCACTTCTC
AACGAAAGACTTTTTGAACATATTTTATTCTGTACTTTTTGCGTAAAAAG
AAAGATATGTTTTTCTCTCTCTCTCTCTTTGAAAAACCTTTATTTAACTG
TATGAAAGAGAAGTTGAGTAAATAGGGAGGAGGGTGTATTTATTTAACAA
ATTCCTTATTTTTATATTTTTGCTTTTTTATGCGAATGAGTTATGGGAAA
CCTTTTGTTAAAAAATATGTGTTGAACTAATTATACAAATTTATGTGCAT
TTACAAATACGTGCCCGGGAAAATTTGAAATTTCGTTTTTGTCAGTTGAT
AATAAACCGAGTTTACTTGTACTAAGCCAGATATTCAGTCACAACTTACC
ATCAGATTTTACTAAGTGACTGAATCAATCTGGATTAGATTTCTAGGCTA
CACTTACCCTTGATCCTTCTCTTAATTGCTGAGCATCAAGCAGAGAGACA
TCAAGTACCATTTTTGGAATCTTTAGTATGACCTGGGGTTTGAACCCACA
ACCTCGCGCATCGTAGTCGGATGCTCTACCACTGCACTGGTCCCTGCGAT
TAGTTAGATATGAAAAGTGAGTTTTTCCACCAATCTTCGTTGCTCAATCA
GATTTACATTTCCTAGTTTAAAGGTCCCAAAAAAGGGCCACATCAGCTGT
GCCTTTCGTAATATCAAGGGACTCAAAATGAAATTTATCAAGCTCCTCCC
GAATTTGAAATCTGTTTTCCTGAGGGAGAGGCCGCCTCTCTAGCTTTATA
TTCTTTTTCCAGGTAAAGAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCT
CTTTTGGCTATGAAAAGCAGGTAAGATAGACATTGTCGCCACTGTTCATC
GTATTTCGATTTTATGATTGATACAGCCATTGCGTATTTTCAATGGTAAG
GAAAATTACTCTTAGGTTCCAAATAAATGGGGGAGGGGCTGGAATAAACG
GGGGTGGGGAAAATTTTCGAGATTTTAATAACCGGGGGGGGNAAAAAGAC
AAGGCGTGCACGGGGTGAAGTTCCCAAAGAGAAGGCGTGGTAAAGGTTAA
GGTGTGTGTCCAGGGCTCTTTTGAACTTATCGATAGAAATGTTTTTGAGG
TTTCTGATGCTCTTTGGCATAACATTAAAAAGTTTTGCACCTTGCACTGC
AAGTGTGCTGTCTCTAAATTTTGATGTTTGATTCTTTTTCAGTGGTTTTG
ATACCATTTACAGTAGGTACAATCTTTTCCATCACCTTCCAGACATACAT
TATTCTGTAGCGTTCTCTTCGCCTTTGAAGTGACACTCCCAATTGTTTGG
GGTGCCATTTATCTTTCGTAAGAAGGACTTTTGAATATCTTCAAGTCTCT
GAATGAGACCAACTGCATTTGGGCTCCACAGAATGGAGCAATATTCTAAT
ATTGGTATCACCAATGATTTATATACCATACAATTTAAAGATCGTGAAGA
AAAAGTTCTCAGGATCCAAGATGTTAAGTTTTTAGCCTTTTCGATTACTG
AAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCATCAGGATTCCAAGG
TTTTTCACAACATCTTTGTTTTCAATCTCAACACCAGATGGTGATGTATA
GCTTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAACGCAAGAGTTCAA
ATTTTATATCATTTAGCTTCATATTGTTGTCATCCGTCCATTTATATATT
CTATCAAGATCGTTTTGAAGTAGGACAGCATCTTCTAGAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAGTGACACCATTCACTAG
CACTGATTGTTTTCTCTCTGTTAGGAAGGACTTTAGCCACTGTAATAATT
TTCCATCTATTCCTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCATTCACTAGCACTGATTGTTTTCTCTCTGTTAGGATGGACT
TTAGCCACTGTAATAATTTTCCATCTACTCCTAGTTTCTTTATTTTTCGT
AGTACAATTGAATGGTCTACTTTTTCAAAAGCCTTTGAAAAATCTAGGTA
CACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTATCAGGTCAT
ATTGTTCCAAAGGCTGACTCAAACATGAACGCCCGCTTCTGAATCCATGT
TGATTGGGATTGAACAGATTATTTTCATCCGTGTGCTTTACAATATGTGC
TCTGAGTACTTTTTCAAATATCTTGATGACATGGGATGTTAGGGCTACTG
GTCTATAATTTGATGCCAGTGATCTGCTACCTCCTTTGTAGATTGGTGTG
ATTGTGCATCTTTTAAGTTCGTCTGGGACAATCCCTTTGTCCAAACTTTG
TCTCCAGAGGATACAAAGAGGAATAGAAAGTTCTTCTTTGCATTGTTTGA
GAAAGATTGCAGGGAAACCATCGGGACCTGGTGCTGCAGTTTGGGACAGA
TCGTTGATTGCTTTTATTAAATCATCTTCTGTACTACTACCGACTGTGCC
CGGACTTAGAGATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAACTCT
GCTTAACCTTTTTCAACTTTCAGAGTGTTTAACGAGATGTTTTTCCCTGG
TTCGTATCAATCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCG
TTTCTCCTCACTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCA
GACTTTTGGAAACGCAACAACAACACGACAGCTAACAACGGTTCTACAAC
ATCAACAACGACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACA
ATAACCCTTCTCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTG
TCCTCTAAGGTAAGCTTGCTATAGCTTTAAGTTACATTCACTATTCATGT
TTTGCCCATTTCGACTGTTCATTTTGTTTCACTTATGTACGCTTGCCACC
TTTTAGAGTCATTTCGCTTCTACATTGTTATATCTTATCATAATTAGATT
CTCATATGTGATCTAGACATAAAAATAACCCAGCTATAAAAATCTATTTT
TTAACTTTCCTTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGAGTTC
TCAGCGTTGATCGAATACATCCAAACAGGTTCGTGTGTGATCACACCAGA
AACTGTGGTGGGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGACGAGC
TGATCGACCTTTGTGAACGCTCTTGTCAACAAATGTGTGATATAAGAAAC
GTAAGTCGCCTTGATCACGGTAATCATCGATTTGATGTAATGTGAAAAAC
AATATTTTAGAGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAAAGTG
GCGCACGAAACTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGTAAAA
GTGACAATAGAACACCCTTTCGATGTGGATTTGTGATACTTTTCAGATTT
GTTTGCCTTTTTCTCAGTCTTTCTTATTATTAAATTCGCTTAGCGAAAGT
ATTACGATAGCCTTCCGTGTATGTATGTATGTGGCGAGACATTTTTTGGG
GCGCAAATTATGGCGTGGGCGTTTGGCTGCGGGCGTACTACGAGCAATAT
TCTAAAGATGGACTCACTCACAAAGATAAAAAATGATAAAAACAGGGATT
TTCTTAATAAATAAAATACGCCAGGCTAGTGCAAGAAGTGTAACCAAGTT
TTTGTAAACATTCATCGTGAGAACTTTTTAAATGGCTGCTTGATTATATT
CAGATATTGCACAAGCTTTTGTGCTTTTGAAAGTTGCAGCTGCTGTATAA
ATTTTAATCATGTTTTCTGGTCCTTTGTAGAGTGTTTAAAGAGGTTTAAT
ATTTGTTTACTACTAAGTATTTTATGTTTGTGTAGTGTTAGTGAATGCAC
CAACAAATTGATCATGCTTAATAGTATATATAAGGAGTTAATATTCCACA
ACAAACAACAACATTATTAACCCTCTCTTCTCTTCTTCTCCAAAACTACA
AACAGCAAAGGTATGATTTTTTTTTCTATTTTTCACCAGATAGTTATGTG
TTAATAGTGAAACCAGTTGTGACAAATAGTCAGTTTTAGCAAGTACCGTG
AGATTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATG
AAAGACCTGGCTGGTCATTAAAATACAACTACGCAGCTCCGCTCANCTTT
CATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAATCT
AACGGTACCGTGAAGTCGGGTAACTTGCATGGATGGAGGCTAACTTTTAT
TGCGTAGGCATCAAATGACTGACCAATCAAAGCAACAAAATTTCAAAACA
AATGAACTCCACTTGCAGCTTTAGCCTACCATTTTTGTTTTGATTTAACT
TTGTATTTTAATGACCAAACGGGTCATTCATTTGGCAAGCTACCCGATCT
CACGGTATTTCTTAGAAATCGTGTCAATTGTGAATTGAAACTCAGCAATC
ATTTTTGTATAATCGAAACGACCCTGCCTAGACACTGCCGTACAGTGTCA
TTGTACCATGATTTACGGTGGGTAAGGTGGGGTGTACAGTACAGCAGATT
TAAAATTAACCTATTTTCGCCGCCGTAAAAAGGACATTTAGATCCAGCCC
CACCGTACACCACCGCACAATGTACAGCGGTCCCTCGTTAATGATGACAG
TTTTTTATCTGATGAAGTTTGATTGGTGTTCGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCATTCACTAGCACTGATTGTTTTCTCTCTGTTA
GGATGGACTTTAGCCACTGTAATAATTTTCCATCTACTCCTAGTTTCTTT
ATTTTTCGTAGTACAATTGAATGGTCTACTTTTTCAAAAGCCTTTGAAAA
ATCTAGGTACACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTA
TCAGGTCATATTGTTCCAAAGGCTGACTCAAACATGAACGCCCGCTTCTG
AATCCATTATTCCTTATTAGGTCTGGAAAATTTTTCGAAAAATCAACAAG
CAGGGGGAGTACTAAGAGTACGGATTGTTCCCCGACTGTGCCCGGACTTA
GAGATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAACTCTGCTTAACC
TTTTTCAACTTTCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCGTATC
AATCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCT
CACTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTG
GAAACGCAACAACAACACGACAGCTAACAACGGTTCTACAACATCAACAA
CGACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCT
TCTCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAA
GGTAAGCTTGCTATAGCTTTAAGTTACATTCACTATTCATGTTTTGCCCA
TTTCGACTGTTCATTTTGTTTCACTTATGTACGCTTGCCACCTTTTAGAG
TCATTTCGCTTCTACATTGTTATATCTTATCATAATTAGATTCTCATATG
TGATCTAGACATAAAAATAACCCAGCTATAAAAATCTATTTTTTAACTTT
CCTTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGAGTTCTCAGCGTT
GATCGAATACATCCAAACAGGTTCGTGTGTGATCACACCAGAAACTGTGG
TGGGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGACGAGCTGATCGAC
CTTTGTGAACGCTCTTGTCAACAAATGTGTGATATAAGAAACGTAAGTCG
CCTTGATCACGGTAATCATCGATTTGATGTAATGTGAAAAACAATATTTT
AGAGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAAAGTGGCGCACGA
AACTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGTAAAAGTGACAAT
AGAACACCCTTTCGATGTGGATTTGTGATACTTTTCAGATTTGTTTGCCT
TTTTCTCAGTCTTTCTTATTATTCGTTTTTAACTAATTTAGTCTAATAAA
ATTTATATTTATTTTAATGTATATCTCTTGGTTCAAATATATTAGGGAAA
TTGCAGTGTAAAAAAATAGGACATGGCTATTGTTTTGACATACAACTAAC
TGTTCTCGACACTGAATTGAAGTTTCATGCTTCATGTTTTTCATTGTTCT
TCTAGCTACCAGTTCTATTGACGTCAATCAGACAACATATTTTGCGTTAC
TCCATCGCTATCAAGCTTGAACAATATGTAAGTGTCTGTCATACAGTAGT
TGCTCCCTTTCTCACAAATGCCCTTATTATTCGTCCAAATTTAAGGAACA
AATGAATTTTAAAAGATTCGAATCTGAAATCGGCCAGCTATGCTTTCGTG
TTTGTCACGGTTATTTTAGACATCCAGTCTGAATCAAACGCTAATTAAGA
ATCAATTTATCTTTCACTTACAGGTGAAGTCGTTCACGGAATCTTGCGAT
AACGAGTTATTTGATTTTTTCGACATTTCGTCTCTGTCCCATGAAGTGTT
CGACTGTTTGCTGACATCGACATCTGGGGTAAGTTAGTTTTCACCCTCTT
AATTCCACGTCATGTGATTATTTTGAAGGGCTTGTAATAAAAGTTTCTTT
TGCCGTTAGAGCTCATGTTGCGGATTAAAACCCTGTCATTTCAATTTCTA
CTTTATTTTCATTATTGATGTTTGGCGATAGGCTCATCTCTTCTTCATGC
TTAATTTCAGCTTCTAACGCTTCCAAAACGAACTGTAGTTAAATTTGTAT
TTTCGTGTAAAAAAATCAGTATTGAATTCATCCAATTTATCAAAAAAAAG
TTGATTTACTTCTCTTTCAAAGAAAAGGAGGTGATGATATTTATACAATA
AGTGTAGAGCCCTGAACCAATTACTGAAGTTTATCAAGAGTAATTTATTT
TCTTCAGGTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCACG
AAAGACTTTCTACATTTCGTAAGTATCCAACTTCAATTTTTCCTTTGTTA
CTACGATCAAAGCACATATTATTTACACGTATTCGACCTTGATTTTGTGT
TGCTTTTGTTTGTGCTTCAAAGGGTTTCCAAACATTGAACTGTGAGGAAT
TAATACACATTTTTGGGCTGGAGTTGCTAAAGATTTTCATGATTTTAGCC
AAAAAGTTGTTTATGCATTTTGAGCCAAAATTGCTTAGTGGCTCCAAAAA
TCTTCACTTATTACTTCATTTTATGCCCAAAATACCTCAAACTAGGTAGG
CAATTTGATGCCAATTTAGGCAAAATATTTTTGATTTTCAAGGTAATATT
GGTTGCTTTTTAGTTCATACTCAGTATGGGCTATGGTTGATAAGCCAAGT
TGCTTCATTCTTTGGCCATTTTCAGGGCTGATGAAAAACTGAGTATATTT
ATGACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCGTTTG
AAAGACTTACTACTGCAACACGCAGACATCGATTCCANCTGTGTTTATTT
ATGACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCGTTTG
AAAGACTTACTACTGCAACACGCAGACATTGATAATTACATTGAAGACAA
GTGAGATTCATCATAACAATATTGTGACGGTTCCAAAACCTGGTCCATGA
ATCTATGACCATGCGGTGACTATTATTTATTATTTTGACCATCCGAATTT
CGTGAAAAACGGGAACGGTATTAAACCCATGCTATTACTCCTATTTTACC
TCCTTTTTCATTTAGAGAACAAGCTTTCGATACCTGATTGATTGAAGATT
AAATCAAAAGTTTCCAAAGGAAATCGCTCAGTTTTTTGCACTTTTATTCT
GCTTTTAAAAGGGTCCCGCGTTTTTAATATTTTTATCCGTCCTTGCTTTG
CTTTTATTTAAAACATGTTGTCGTTTTGCTATATGAAAATATATTTTTAT
GATCAGACGTCCTTTTAATGTTAGTATCTCTTTACGGCGCTCACATGTTA
TATTAAAATTCGTGATAATGTGTAAATTTCATAAAATATATACATGAAGC
AAAATAAAGGCCAATTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGACGAA
AACTACGCATACTTATATCGGGAATTATCTTTACTCCAGGTAGTATTCTT
CTTCAATAGTCGGAAATGCTCTTCTATGATTCGAAAAAAAGTCATTATTG
ACAGTAACGTTGGCTAGCAGATATTTTAAGCTTTTATTGCTTTTCTTTGG
GGTTCATAATTCATGCCAATACTATAGCAATCAAATGCATCTAAAACGAG
GCATCTGGAGAAGAAGAACAAAATGTAAAGTCAAATAATAGTAAATTAGC
TGCTCTCTGTATTTCTTTATATTGTTGTCTATTCACCCTTGGCTTTTTAC
CCTTAGTATTTATTATGGCAGTCAGGAGTAATACCTTAAACATGGCGTAT
ACCTTGTTCAAGTAAGAATTCAAAATTTCTATTGTTTGATACTTCCTATT
TAGGAAGTAGTGGGAATATTTTCTAAACTAGGAAAAAGGGCACTCTCTCG
TCTATACCATTGGAAAGAGCACGAGAAACTGAATTCCCATGGTGATTTTT
AGAAAATTCCACAGCCGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003188XLOC_003188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005624-exon-sc0000054-1575043694:240042..240199TCONS_00005624-exon-sc0000054-1575043694:240042..240199Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:238127..238279TCONS_00005624-exon-sc0000054-1575043694:238127..238279Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:237850..237921TCONS_00005624-exon-sc0000054-1575043694:237850..237921Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:237521..237607TCONS_00005624-exon-sc0000054-1575043694:237521..237607Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:237183..237295TCONS_00005624-exon-sc0000054-1575043694:237183..237295Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:236454..236575TCONS_00005624-exon-sc0000054-1575043694:236454..236575Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:234980..235037TCONS_00005624-exon-sc0000054-1575043694:234980..235037Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:229599..229884TCONS_00005624-exon-sc0000054-1575043694:229599..229884Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:229208..229390TCONS_00005624-exon-sc0000054-1575043694:229208..229390Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:228723..228794TCONS_00005624-exon-sc0000054-1575043694:228723..228794Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:228422..228526TCONS_00005624-exon-sc0000054-1575043694:228422..228526Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:227982..228042TCONS_00005624-exon-sc0000054-1575043694:227982..228042Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:227473..227525TCONS_00005624-exon-sc0000054-1575043694:227473..227525Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1575043694:226329..227372TCONS_00005624-exon-sc0000054-1575043694:226329..227372Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:240042..240199TCONS_00005624-exon-sc0000054-1510915933:240042..240199Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:238127..238279TCONS_00005624-exon-sc0000054-1510915933:238127..238279Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:237850..237921TCONS_00005624-exon-sc0000054-1510915933:237850..237921Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:237521..237607TCONS_00005624-exon-sc0000054-1510915933:237521..237607Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:237183..237295TCONS_00005624-exon-sc0000054-1510915933:237183..237295Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:236454..236575TCONS_00005624-exon-sc0000054-1510915933:236454..236575Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:234980..235037TCONS_00005624-exon-sc0000054-1510915933:234980..235037Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:229599..229884TCONS_00005624-exon-sc0000054-1510915933:229599..229884Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:229208..229390TCONS_00005624-exon-sc0000054-1510915933:229208..229390Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:228723..228794TCONS_00005624-exon-sc0000054-1510915933:228723..228794Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:228422..228526TCONS_00005624-exon-sc0000054-1510915933:228422..228526Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:227982..228042TCONS_00005624-exon-sc0000054-1510915933:227982..228042Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:227473..227525TCONS_00005624-exon-sc0000054-1510915933:227473..227525Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1510915933:226329..227372TCONS_00005624-exon-sc0000054-1510915933:226329..227372Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:240042..240199TCONS_00005624-exon-sc0000054-1491911889:240042..240199Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:238127..238279TCONS_00005624-exon-sc0000054-1491911889:238127..238279Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:237850..237921TCONS_00005624-exon-sc0000054-1491911889:237850..237921Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:237521..237607TCONS_00005624-exon-sc0000054-1491911889:237521..237607Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:237183..237295TCONS_00005624-exon-sc0000054-1491911889:237183..237295Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:236454..236575TCONS_00005624-exon-sc0000054-1491911889:236454..236575Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:234980..235037TCONS_00005624-exon-sc0000054-1491911889:234980..235037Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:229599..229884TCONS_00005624-exon-sc0000054-1491911889:229599..229884Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:229208..229390TCONS_00005624-exon-sc0000054-1491911889:229208..229390Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:228723..228794TCONS_00005624-exon-sc0000054-1491911889:228723..228794Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:228422..228526TCONS_00005624-exon-sc0000054-1491911889:228422..228526Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:227982..228042TCONS_00005624-exon-sc0000054-1491911889:227982..228042Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:227473..227525TCONS_00005624-exon-sc0000054-1491911889:227473..227525Clytia hemisphaericaexon
TCONS_00005624-exon-sc0000054-1491911889:226329..227372TCONS_00005624-exon-sc0000054-1491911889:226329..227372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:226329..240199 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.963485	1.1205	0.133001	0.400223	0.358791	0.535004	0.180702	0.14391	0.848885	0.616043	1.93766	0.159334	0.55226	0.236737	0	0.190247	3.74451	3.67568	0.798288	0.460294	4.86167	4.95968	4.18885	5.21467	1.99273	2.12318	3.52888	4.01683	4.21126	4.41622
Blast
[Close]
BLAST of TCONS_00005624 vs. Swiss-Prot (Human)
Match: RPGP1 (Rap1 GTPase-activating protein 1 OS=Homo sapiens GN=RAP1GAP PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 4.371e-32
Identity = 68/145 (46.90%), Postives = 91/145 (62.76%), Query Frame = 3 
Query:  102 RMMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFLHVFIIIQPQILHGE-LFYKVDVASRDFVQNYGPPLPKNKLFKNDSSFQRWLYAKIINGERASYRSPKFASMQERTRRQLLEEL-----VHDQA 518
             +MFHVST LP  E D Q+LQRKRHIGNDIV ++F      F P+ I SNFLH ++++Q +    +   YKV V +RD V  +GPPLP   +F+    FQ +L  K+IN E A Y++ KFA ++ERTR  LLE L     +H Q+
Sbjct:  263 EIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQS 407
The following BLAST results are available for this feature:
BLAST of TCONS_00005624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGP14.371e-3246.90Rap1 GTPase-activating protein 1 OS=Homo sapiens G... [more]
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