TCONS_00005608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005608
Unique NameTCONS_00005608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005608 ID=TCONS_00005608|Name=TCONS_00005608|organism=Clytia hemisphaerica|type=transcript|length=1758bp
AAGAAGATACGCGGCCACGTTCTAGGAAAGTGATAGTTCCCGTTTTATTT
CGATACAAACAAACACTTGATGAAAAAGCTGACAAGATTAAGTTTACGTT
ATTTGGCTCACCGCACATTTGTTGTTTGAAGTCTGAACTTTCAACGCAAC
ACGTAGAGGAGGTGTCGTCAACGTTGCTGCAGAAATATAATATTCAACAA
AAGAGCGATATTTTCATTACCGACTCCTCGGGTACGTCTTGTGGTTTTTG
TGAATATACGTCCGGATGTACGGGATGCCGGATCAACGAGATAACGGACA
TGAAACTCAAACCGGGTTGTTGTTTATCCATCACTTTTTACGAGGAAGAT
AGATCCGTACTGAACACATTGAATTATTGTAAAGAGGACGAAACAATGAA
ACTACTTCGTGATTCTGATGTCATTTCCCTGACAGAATGTATGCAAACTT
TCGCTCAAATAGAAACATTAACAGAAGACAACCCTTGGTTTTGTCCGGCA
TGTCAATCCAACCAAGTGTCCGAAAAAGAAATGAGGGTCACTCGGTGGCC
TGGCACACTCATCATTCATTTAAAAAGATTTCACTTTGAAGAATCTCAAG
GTACCAAGATTTCATGCCCGATAGATTTCCCTTTGTCCGATCTACGCGTC
GACCTGCTATCCTGTCCGGAGGCGTTGAAAGTAAATTGTTGCCCGGTGTA
CGATTTATATGGCGTCGTCAATCACATGGGATCATTGTTCGGTGGTCATT
ACACAGCGTTCGCCAAACAGAGAGAAGAATGGTATAATTTCAACGACGAA
ACTTTCAAAAAGATGCACCCAACGGAGGATGTGGATTATCAAAAAGAAGG
ATACGTTCTCTTCTACCAAATGAAAGactCGTGATGAATAAGAGTTGAAA
TGTAATGGGGATATTGGAatgaatttaaatgaaaaacgaaaacaTGTTCT
AGTCCACGATCGGGACACACATAAGGCGAGTTGTTGCTCAACAACATACA
TTCGCTGGACATTTGAATATAGCATCATTTTGATGGTTGAAATTCTCTTG
GTAGAGTTTTGATTGAACACTGTTTTGTTAGCTTCCATCTTTTTGTTGCA
CTCTTCTGGGTTTTCTTTGTAAACCAGTTCTGTCTTCTGGAAGTTCAATG
TACAAACACCAAACCTGGTGGAAAAGACTGACGCAAcccaataaaaattt
tcatggaTGCACGGTTTACCTTCTGTATTGCTcatattttgatgacgtca
gcattttttataagaactccaTGAAAGTCCATACGTCAATTGGTTCCAAA
GTTATTAGAgcttgcatttttcaaaaaaaatcaaacctttTACCTATAGA
ATTTGAGTCACTTTTtttaatgctgacgtcatccGTTTTGTGCCAACAAA
TTTTGGAAATGTATAAAAGTTAGGAAAACTTGTGAAATCAAGGCAATAGC
TCTAATTTTAAAATGTAACGACGAAATCTTTATCAATCTATCTGCACGCT
TTTTACACGCTCGCACTGCGGAGATCAGCTCCCTTACGGTTATATCCGTA
TAATGGTAAgtggaaaaaatttaaaagaccgTAGACTTCATGTAATGACA
ATAGGAAAATAAGTATTttgtatttcaattttttatgttcattttatata
tttttacttttaggtAAATGTTCTTCTAATTATTATTAAGTAGCTGTAAA
AAGAAAAGTTCTAGCTTTATAAGTAAATTCGAGATAAAATACAAACTTCT
GTCATACT
Run BLAST on NCBI

transcript from alignment at sc0000054:32337..37717-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005608 ID=TCONS_00005608|Name=TCONS_00005608|organism=Clytia hemisphaerica|type=transcript|length=5381bp|location=Sequence derived from alignment at sc0000054:32337..37717- (Clytia hemisphaerica)
AAGAAGATACGCGGCCACGTTCTAGGTGAGAATTACGCAAATAATTGACC
AATTAACCCTAATGTTTTATATCCTGAATACTCTTAGTTGTTATTGTAGT
TGTACATTTTCTAAAACATGTTTCCCATTTTGCCAATAGGAAAGTGATAG
TTCCCGTTTTATTTCGATACAAACAAACACTTGATGAAAAAGCTGACAAG
ATTAAGGTAAACTTTTCCGTCAACAGATAAGTCCTTTCGTTAACCCAGAT
GGCCTGGTCACAATATTTTTATAGCTGGTTACGATTTCGTATTTTTCCAG
CTAAACATGAAGCTGTTGTATTGGTTAGGGACGCAAGAAACAAGTTTTCG
GCCGATAGAGCAGCCTCATTTAACTTTATACAGAAGCCTAGCACAGTTGG
TTCCTTAACTTTTTCTCCTTCCTCTTTTCGATCTGTTCTTTCTTTAGACA
CAGACCTCAATTTTTGTAGACATCACGATTTTGCTTTTCTCCTCTAGTTT
ACGTTATTTGGCTCACCGCACATTTGTTGTTTGAAGTCTGAACTTTCAAC
GCAACACGTAGAGGAGGTGTCGTCAACGTTGCTGCAGAAATATAATATTC
AACAAAAGAGCGATATTTTCATTACCGACTCCTCGGTAGGTCGTTTATTA
CACAAAATCGTCACGTATTTAATTTTCTTCATTTTGTCGACTGATTTTGC
AAAAAAATTTGAAAATTAACCTTGATACTAATAAGCTTTTTTACAAACTT
TCAAAAATCCTCTATTAAAAACAGGAGTTGTCAATATGAACTAAATTTTC
TTTAAACATGTAGCACAATGGCTAATCTATCACCCTCTCTCTCTTATTTC
ATCTTTAGGGTACGTCTTGTGGTTTTTGTGAATATACGTCCGGATGTACG
GGATGCCGGATCAACGAGATAACGGACATGAAACTCAAACCGGGTTGTTG
TTTATCCATCACTTTTTACGAGGAAGATAGATCCGTACTGAACACAGTGA
GTGTCCCTCCCTTTGTCATCCAGATTTCAGAGCTACTACAACAGTGAGGT
CTCTATAACTTGAACACTTGATGTAATTCTTTACTTTCACGAGTCAAAAA
ATAGCTACTCAATTTTTTGAAAATTTTGCGTGTATTCGTGTATGAGCCTA
AACAACGAGCTGTAAACAGCAATTTTCAGCCTACTGTTTCTTGTTCAAAA
GTATAATTTCTAGTATCGATTTTCTCTTCTTTCCTATCGTTTTCTCCTGA
CTATATAATCGATGAGCCTTGCAAACTTTCAAACTTGACATTACTTTTAT
GCAAGCTTTCACAGTTTTCAATCTCTTCTTTTATGCAGTTGAATTATTGT
AAAGAGGACGAAACAATGAAACTACTTCGTGATTCTGATGTCATTTCCCT
GACAGAATGTATGCAAACTTTCGCTCAAATGTAAGTAAAGTCTTCATTGA
AGGTTTGTGTGTCAAGGAATGCTTGGAGGGGGAGTTGGAGGGGTGTTTCT
AAAGTCTATTTTCTACTTTCATATTAAAACAACACAATCTAACGGCTCTT
CTTTCAAAAATACATTTAAAACATAGAAATGATTTCGTATCAGGACTTGT
ATTAAGTAATCTTCCATCGTTAAATGAGAATCCTACCCTAGGATCAAAGC
ACTGAAGCCATCGGTACAAAAATGGAAATTGCAGGCTTTTAATGCAACCA
ACCTGTGTTTTTCAGTTTTCAATGACTAATCTAACAACTACTTATTTTCG
TATTCTCATAGAGAAACATTAACAGAAGACAACCCTTGGTTTTGTCCGGC
ATGTCAATCCAACCAAGTGTCCGAAAAAGAAATGAGGGTCACTCGGTGGC
CTGGCACACTCATCATTCATTTAAAAAGGTAGAATTTGTTGTTGTGTATA
ATCAATAAAGACCACCTTCCTCGCTTTTTTAACATACTTTCTTTAGGTTT
TAACTTAATATGAAGACACGAGGGTTAAAATCGAGCTTCCCTTTTTTAAT
GAAAAGGAAGGAAGGAGAGAAAGTCTATTGTGTGTAAGTTGAAAAACTCG
GTTGCGGTTTTGGTATTGATTATGATCAGAGAGTTACCACTGTATAATAA
ATAGCTTTTGATCTTTTGTAATCGCTTTCTTTCCTAAACTTCAGTCTTGT
AGTAATGATTGTACACGCTTTTTCGGTTGTTTCAGATTTCACTTTGAAGA
ATCTCAAGGTACCAAGATTTCATGCCCGATAGATTTCCCTTTGTCCGATC
TACGCGTCGACCTGCTATCCTGTCCGGAGGCGTTGAAAGTAAATTGTTGC
CCGGTGTACGATTTATATGGCGTCGTCAATCACATGGGATGTAAGTTCAT
TTCAATAGAGAGATCTCATTGCCATTTGATGAGAAAAAGTGGCTGAAGAA
AACCTTTGAATGGACCTTATCGGAGTTTTTCATTTTTCTAAAAAAGCGAT
GCATTGTGGGATTGTTTCGAGCGTATTACAATAGAACTCCCTCGAGGAAT
TCCTAAGAGATTTCTATTGTAATACGCTCGAAACAATCCCGCAGTGCATC
GCTTTTTTAGAAAAATCAAAAACTCCGATAAGGTCTATTCAAAGGTTTTC
TTCAGCCACTTTTTCTCATCAAATGGCAATGAGATTTCTCGTCGTTAGAT
ATGTTACTATAGGAACTATTCCAGAATTAATTATTATTCAAGATATTTTT
AATGATAATGCTTTCTTTCTTTCTTCTAATTAATTTGATGCTCCTCACGC
CTAAGTCAAGTTCTTGAGTAATTTTCATCAAATAAAACAAAGGATTTAGA
AAGATAAGTTCAAAGAAATTTAACAGACGTAGAGGAAAAAAAGGAAGAAA
GGACAATATAACAAAGGAAAATATATTTTAAACGATAAACTTTTAACTGC
CTCATTTCTTGTTCCCTGTCGAAGCCAGTCTGAAATAAGACGATTGACAC
TGATTTTCTTTAGTCATTTCTTTTCGGTTTGTAATTAAGGTGGGGGTTCT
GATAAACTGTATTTTATACCCTCACAGCATTGTTCGGTGGTCATTACACA
GCGTTCGCCAAACAGAGAGAAGAATGGTATAATTTCAACGACGAAACTTT
CAAAAAGGTGAGCCATCATCATTCGGTACAAATGTTTGTATTACTGTTGG
GAGTTTCTAAACGTCGACCAGAAATGACGACCGGCGACCACGACCAGCGA
CCAGACAAATTTGAGTTATCAAGTTTTTTTCCCTTTCTCCAACGTAGAGT
GTCTCTCCTAATCATTTGAAAATTATATCATATTGAAGAGTAAGCTCACC
CCTGTCTCATCTATTTAAAGCCACGTGCCAAATACGTAAAACAACCATTT
CGACGTTCTTGAAGCTTGATTATGGTGTCAATTCCGAGGATTTTTCATAT
GCGAGCTACGAGTTACAAGTTACGAGTTACGAGTTGCATTTAGAACCACG
AGTTGCGAGTTACTTTTTACGAGTTACGAGTTACGAGTTGCNGAGCTTGA
TTATGGTGTCAATTCCTATCCTTTTATATTATCAGCCTCAAAATAATTAG
TGGCACAAAATATTTTGAAAACGGTTTGAGAAGCTTTGTATTTCATCATC
AGATTGTTATTTCTGTTGAAATTAGTCATTTTGTCAGCATAAAGACAATA
GAATAATTGATTAGATTCATANAACATTCTCTACGGTGGAGAGAGCAGAT
AAACTCGATAATCCAAATTTATCTGGTCGCCGGTCGTGGTCGCCATTTCT
GGTCGACGTTTAGAAACTCCCATTACTCCCATCTTAAAGTTCTGAAACAA
TAAATCAAAGTTTCTTTCTTTTAATTTGAACAAGCTCTGATATCATCGAG
CACTCTCGGCAGATAAGAAGAAAATAGACTTGCGAAACTCCCATTACTGT
TGTTTGTTGGTTTGAAATAAAGTGGTTACTTTGATTTGATGCTGAAGCCA
ATTGTCAAGTATTTGGTTTTATGCTTAAGTCAATTGTCAAGTACAGCTGA
CTCTCTCTAAATCGATCTTTAAGGGACCGTGAGTTTTCTTCGAATACGAG
ATTCGAATTACGGAGATAGATTTATAAGATTTTCCAGCTGAGCAGACCAG
CTCGAATTTTAAAGAGATTCGAATAATAGAGGTTCGAATTAGAGAGAGTT
TACTATATGTTGAGATTCCGCTAGTGGGGAGATCAAGGGAATATGACAAA
TTGACGGACATTTCTTTCAACAACATTTAGATGCACCCAACGGAGGATGT
GGATTATCAAAAAGAAGGATACGTTCTCTTCTACCAAATGAAAGGTAAGG
GAGCCAATGTTTTAAAAAATTTCATATTGTTTCCTCCTCTGCTTTTCTAC
CCCTCTTTAAAAGAAACGAACAATTTTCCTTGTTGGATTAGTTAAATTTT
GGCGACTAAAGTTTTAGAAATTATAGGTAGTAATATGTTTTTGTACATAT
ATCTCAAGGATTTTTGCTTCTAGTATTTATTCCAAATTTCTTTTTTCAGA
CTCGTGATGAATAAGAGTTGAAATGTAATGGGGATATTGGAATGAATTTA
AATGAAAAACGAAAACATGTTCTAGTCCACGATCGGGACACACATAAGGC
GAGTTGTTGCTCAACAACATACATTCGCTGGACATTTGAATATAGCATCA
TTTTGATGGTTGAAATTCTCTTGGTAGAGTTTTGATTGAACACTGTTTTG
TTAGCTTCCATCTTTTTGTTGCACTCTTCTGGGTTTTCTTTGTAAACCAG
TTCTGTCTTCTGGAAGTTCAATGTACAAACACCAAACCTGGTGGAAAAGA
CTGACGCAACCCAATAAAAATTTTCATGGATGCACGGTTTACCTTCTGTA
TTGCTCATATTTTGATGACGTCAGCATTTTTTATAAGAACTCCATGAAAG
TCCATACGTCAATTGGTTCCAAAGTTATTAGAGCTTGCATTTTTCAAAAA
AAATCAAACCTTTTACCTATAGAATTTGAGTCACTTTTTTTAATGCTGAC
GTCATCCGTTTTGTGCCAACAAATTTTGGAAATGTATAAAAGTTAGGAAA
ACTTGTGAAATCAAGGCAATAGCTCTAATTTTAAAATGTAACGACGAAAT
CTTTATCAATCTATCTGCACGCTTTTTACACGCTCGCACTGCGGAGATCA
GCTCCCTTACGGTTATATCCGTATAATGGTAAGTGGAAAAAATTTAAAAG
ACCGTAGACTTCATGTAATGACAATAGGAAAATAAGTATTTTGTATTTCA
ATTTTTTATGTTCATTTTATATATTTTTACTTTTAGGTAAATGTTCTTCT
AATTATTATTAAGTAGCTGTAAAAAGAAAAGTTCTAGCTTTATAAGTAAA
TTCGAGATAAAATACAAACTTCTGTCATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003184XLOC_003184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005608-exon-sc0000054-1575043694:37693..37717TCONS_00005608-exon-sc0000054-1575043694:37693..37717Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:37512..37578TCONS_00005608-exon-sc0000054-1575043694:37512..37578Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:37083..37220TCONS_00005608-exon-sc0000054-1575043694:37083..37220Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:36722..36859TCONS_00005608-exon-sc0000054-1575043694:36722..36859Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:36288..36379TCONS_00005608-exon-sc0000054-1575043694:36288..36379Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:35840..35956TCONS_00005608-exon-sc0000054-1575043694:35840..35956Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:35378..35532TCONS_00005608-exon-sc0000054-1575043694:35378..35532Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:34611..34690TCONS_00005608-exon-sc0000054-1575043694:34611..34690Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:33424..33487TCONS_00005608-exon-sc0000054-1575043694:33424..33487Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1575043694:32337..33218TCONS_00005608-exon-sc0000054-1575043694:32337..33218Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:37693..37717TCONS_00005608-exon-sc0000054-1510915933:37693..37717Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:37512..37578TCONS_00005608-exon-sc0000054-1510915933:37512..37578Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:37083..37220TCONS_00005608-exon-sc0000054-1510915933:37083..37220Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:36722..36859TCONS_00005608-exon-sc0000054-1510915933:36722..36859Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:36288..36379TCONS_00005608-exon-sc0000054-1510915933:36288..36379Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:35840..35956TCONS_00005608-exon-sc0000054-1510915933:35840..35956Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:35378..35532TCONS_00005608-exon-sc0000054-1510915933:35378..35532Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:34611..34690TCONS_00005608-exon-sc0000054-1510915933:34611..34690Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:33424..33487TCONS_00005608-exon-sc0000054-1510915933:33424..33487Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1510915933:32337..33218TCONS_00005608-exon-sc0000054-1510915933:32337..33218Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:37693..37717TCONS_00005608-exon-sc0000054-1491911889:37693..37717Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:37512..37578TCONS_00005608-exon-sc0000054-1491911889:37512..37578Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:37083..37220TCONS_00005608-exon-sc0000054-1491911889:37083..37220Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:36722..36859TCONS_00005608-exon-sc0000054-1491911889:36722..36859Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:36288..36379TCONS_00005608-exon-sc0000054-1491911889:36288..36379Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:35840..35956TCONS_00005608-exon-sc0000054-1491911889:35840..35956Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:35378..35532TCONS_00005608-exon-sc0000054-1491911889:35378..35532Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:34611..34690TCONS_00005608-exon-sc0000054-1491911889:34611..34690Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:33424..33487TCONS_00005608-exon-sc0000054-1491911889:33424..33487Clytia hemisphaericaexon
TCONS_00005608-exon-sc0000054-1491911889:32337..33218TCONS_00005608-exon-sc0000054-1491911889:32337..33218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:32337..37717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000668091	0.844221	0.196293	0.0384333	0	0	0	0	7.39362e-10	0	0	0	0	0	0	0	0	0	0	0	2.04756	0.940823	4.76759	1.62018	0	0	1.34468	2.75564	0.314813	0.00301257
Blast
[Close]
BLAST of TCONS_00005608 vs. Swiss-Prot (Human)
Match: UBP4 (Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.341e-24
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3 
Query:  420 VISLTECMQTFAQIETLTEDNPWFCPACQSNQVSEKEMRVTRWPGTLIIHLKRFHFEESQGTKISCPIDFPLSDLRVDLLSCPEALKVNCCP-VYDLYGVVNHMGSLFGGHYTAFAKQR--EEWYNFNDETFKKMHPTEDVDYQKEGYVLFYQMKD 878
             ++L +C++ F  +ETL E +PW+CP C+ +Q + K+  +   P  L++HLKRF +      K+   ++FP+  L +    C     ++  P VYDL  V NH G++  GHYTA+AK +   +WY F+D        +ED    K  YVLFYQ +D
Sbjct:  775 TVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC----NLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLA--SEDQIVTKAAYVLFYQRRD 924
The following BLAST results are available for this feature:
BLAST of TCONS_00005608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP41.341e-2435.90Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sa... [more]
back to top