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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005606 ID=TCONS_00005606|Name=TCONS_00005606|organism=Clytia hemisphaerica|type=transcript|length=840bp
CCATGCGTTGTGGCATCATCCTTTTGACTGGATAGTGGTTGAATTAAAAG
TATAGGTTGATTTTCACTTAAATAGTTTGTGTGTTTGACATCGTTTGGTA
CGATCGCCGATATGGGGAGGAAGTCTCGTCTATTCAAGAAGACGACCTCG
TCAACCAAGACTCTAAAAGAGTTTTTGAGTAATGCTGAGgtcAAGCAGAG
GGAAAAGGAGCTATCAAAGATGAAAGACAAGTTAGAGTCCAACCAAAAAT
ATTCAGATGTATTGAAGAAGAACCGACAGGTAAAGAATTTGGACGAGGAA
GTCATATcaccaaataaaaagaaaaaaaaaagaaagaagaaaaataatcc
GAACCCTATAGTCAACAATGTATCGCAAGATTCAGATGCAAATAATAATT
CCAGCCATGCCATTAACTTGACTTGCAAGTCACAAGCAAATCTTCAGCTG
TGTAAAAAACACGACGTCTCACAAATGATCATAACGGATGATATCGGTAA
CAAGCAATTATTAAAAGATCAAGATGCTGTCAAACAGGATAAGAATATCC
TGCACACCCAATATGTACATAAAGAAGATGCAGAGTGTTTACAACCAATC
TCCAATGAAGAATGGAAGATGGACGATGGGAAAGGAGCAGCGTACCATGC
CTGTAAATGGTTCAATATGATCCTGATCGTCGTTTCAACTGTCATGTTGG
TGTTTTGTTTCATTCTGCACCAGGACCAATTcgttttcgaaaaaataacc
aCTTCTGAATATGGTACTGAGGACCAGTTAAATGGAATATTTCTCGACCA
Ttcataaatttaatttttaaatcattattttcatacaaaa Run BLAST on NCBI protein sequence of TCONS_00005606-protein >TCONS_00005606-protein ID=TCONS_00005606-protein|Name=TCONS_00005606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MGRKSRLFKKTTSSTKTLKEFLSNAEVKQREKELSKMKDKLESNQKYSDV
LKKNRQVKNLDEEVISPNKKKKKRKKKNNPNPIVNNVSQDSDANNNSSHA
INLTCKSQANLQLCKKHDVSQMIITDDIGNKQLLKDQDAVKQDKNILHTQ
YVHKEDAECLQPISNEEWKMDDGKGAAYHACKWFNMILIVVSTVMLVFCF
ILHQDQFVFEKITTSEYGTEDQLNGIFLDHS Run BLAST on NCBI transcript from alignment at sc0000054:795839..799371+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005606 ID=TCONS_00005606|Name=TCONS_00005606|organism=Clytia hemisphaerica|type=transcript|length=3533bp|location=Sequence derived from alignment at sc0000054:795839..799371+ (Clytia hemisphaerica)
CCATGCGTTGTGGCATCATCCTTTTGACTGGATAGTGGTTGAATTAAAAG
TATAGGTTGATTTTCACTTAAATAGTTTGTGTGTTTGACATCGTTTGGTA
CGATCGCCGATATGGGGAGGAAGTCTCGTCTATTCAAGAAGACGACCTCG
TCAACCAAGACTCTAAAAGAGTTTTTGAGTAATGCTGAGGTATGTATGAA
CCTTTCTCATACAAATTTCCCCTCGTGATATGATGTGATTTTGTTCAGTC
TTGTCACAAGTGTATCTTTGATTTATCCTCCCTCTGACTTAtaaatgttt
atatattttctCGCGCCTCTTTCACTTTTGGTgctttgcattttttgaaa
aacatttttcgtctAACGTCTCGCGTATGATGGACGATTGGTTTAGtagc
ccccccccagcggtttgcgtgaatgcgtgaaaatctaaaaaaaattgcgt
gaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatccatatttcta
ttgcgtgaatgcgtgaatctgccctgtctTTTGCatgaacgcgtgaattt
ttccttttcacagtttgtagaaaaccccaaggtgcgcacctatcccaaat
tcaagggatgccaggtgaaggtCCACAAAAATGTCAGCAACTTTCAATTC
TCTATTTTTAAAAACGGTTCAagatttagatgcgctttctagcaatctag
acaccttaaatttccagatttttcgctcgggccaaacatgtattggccct
cgaatcttaaataactctaattcgccccccttgaaagtgtttgtttaaga
taaaaccatggttatACATGATGAGTCATCCAGGGCCAGAGCCAGAGCCA
CTGGgggcaggaggcggccatgacttcaccacgtttttgcaaataaaaag
aaacttatttccaAGAAATCtttacccatgatgtagactttcgataacct
tatttcttggcaaaattagtctgaaatggagtagtatttaagcacatcag
agggctaaaatataaattttctcctgtcggcgcaaaacatggttgcgcct
ccttagtcactatgttttcggcccctacacgttaggaaattaattcgcga
gccctgattaaaacatttctttttaaattttgttgatCGCctcgctcgca
acaaatgttcattcttttacctcattttacaagctatcaagcgatcgcac
cttgcctctaacgaatttagactacattcttcttcaaagagagcattttt
agccaaacgcgagtgacagaaatgcaaaaatttcctctctgcgtaaacca
tggttgccCCTCCTTACCCCTAAGCTAAGCATCATGGTGTTatactcgag
tttgtttgacctatttttgataatgtttaagctattttttgtacaaaatt
tgcctgcggcgcatatcttttcacttactatcgcgatacgttaactgcag
aagcttttccaaacgatcgtgacaagttagaagaatcaaatattttgcgt
gatggcatgtgattaaagttgaaaaattacgtaacactttctatttgggg
gcttcttatgacgctaccaaacacggtgttttatagtcaggtctacatga
aaaaatcactactgagttaagtttttctcaagtgcggtcgaataatatct
cgagtacagccttgtcatacttttttatgcaaatcgaacgttttactcca
taatggcggaaatggcggaaattacgtaaattacgtaacttagcgatatg
tgcaagacctctattttcgacattttccccgattttttccgaaaatttcc
ccgattttccaaaaaattgggtttgcgtgaattccgagaaaaacttgcgt
gaatgcgtgaattgcgaaaaattttttgcgtgaatgcgtgaaatttgggt
ccgctggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggctct
tagTATGAGCGGCCCCCAGAACATCAGAAGTCTATCTGTGTCAGAAAATT
ACCAAACAGTAAAAAGGTCGAATTTTAGTGGATGTAGACTTAATAAATAC
TCTTGGAACACCTACACAAACTAAAAACTTCTTGCTTCGGCTTCTATATA
gtttgatttacattcatttcaATAGCTGCTGTGTGAACTGGAACAAATTT
TCATCAATTAGCACATCAATATaccatcttttttttcaatttcaggtcAA
GCAGAGGGAAAAGGAGCTATCAAAGATGAAAGACAAGTTAGAGTCCAACC
AAAAATATTCAGATGTATTGAAGAAGAACCGACAGGTAAAGAATTTGGAC
GAGGAAGTCATATcaccaaataaaaagaaaaaaaaaagaaagaagaaaaa
taatccGAACCCTATAGTCAACAATGTATCGCAAGATTCAGATGCAAATA
ATAATTCCAGCCATGCCATTAACTTGACTTGCAAGTCACAAGCAAATCTT
CAGCTGTGTAAAAAACACGACGTCTCACAAATGATCATAACGGATGATAT
CGGTAACAAGCAATTATTAAAAGATCAAGATGCTGTCAAACAGGATAAGA
ATATCCTGCACACCCAATATGTACATAAAGAAGATGCAGAGTGGTAAATA
CATTTTATCAGGAAAAGATCTTGGAAAAATtatctaaaattttgagggga
TGAGCAAAATCTTCCCTGACGGAAATTTTTCCTCCAATATTCAATCCCCG
gtcaaaaaattgacattttcttcATGTTTGTATCCCAAGATTTTGAGGTA
AAGATCCTTGAACATACGATTTTACTTGACTCGGGTTGATTTCAGTTTTC
TCAGGAATAAAGGGAAACATCTACAAATTACATGAAAACTGCACGAGGAT
CATTTACTTAAATTCTAGCTCGTCATTTGAAGGCCTGGCTGAAAAACTTT
ACAATGATTCGACTTTCCACCAACAAACGAGCAATTTATCCCTTAGCCAC
ATATTCTTAAATCAAAACTTGATGAACCAGTAATTAAAATCTTCCCagaa
aacaatttaagaataaaacaagaaaaaactcTGAAACTTTAATGGAATAC
CATCCTGGGTTATCTTGAGACCAAAAGTATAGGCTAACCCCTCTGATGAA
TTTAGTTcatatcaaatttcaaaaaatataaacagaCAAATTTTATTGTA
ACAAAATTTCCGTTCTATTTCACAAATCAGTTTACAACCAATCTCCAATG
AAGAATGGAAGATGGACGATGGGAAAGGAGCAGCGTACCATGCCTGTAAA
TGGTTCAATATGATCCTGATCGTCGTTTCAACTGTCATGTTGGTGTTTTG
TTTCATTCTGCACCAGGACCAATTcgttttcgaaaaaataaccaCTTCTG
AATATGGTACTGAGGACCAGTTAAATGGAATATTTCTCGACCATtcataa
atttaatttttaaatcattattttcatacaaaa Coding sequence (CDS) from alignment at sc0000054:795839..799371+ >TCONS_00005606 ID=TCONS_00005606|Name=TCONS_00005606|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0000054:795839..799371+ (Clytia hemisphaerica)
ATGGGGAGGAAGTCTCGTCTATTCAAGAAGACGACCTCGTCAACCAAGAC
TCTAAAAGAGTTTTTGAGTAATGCTGAGgtcAAGCAGAGGGAAAAGGAGC
TATCAAAGATGAAAGACAAGTTAGAGTCCAACCAAAAATATTCAGATGTA
TTGAAGAAGAACCGACAGGTAAAGAATTTGGACGAGGAAGTCATATcacc
aaataaaaagaaaaaaaaaagaaagaagaaaaataatccGAACCCTATAG
TCAACAATGTATCGCAAGATTCAGATGCAAATAATAATTCCAGCCATGCC
ATTAACTTGACTTGCAAGTCACAAGCAAATCTTCAGCTGTGTAAAAAACA
CGACGTCTCACAAATGATCATAACGGATGATATCGGTAACAAGCAATTAT
TAAAAGATCAAGATGCTGTCAAACAGGATAAGAATATCCTGCACACCCAA
TATGTACATAAAGAAGATGCAGAGTGTTTACAACCAATCTCCAATGAAGA
ATGGAAGATGGACGATGGGAAAGGAGCAGCGTACCATGCCTGTAAATGGT
TCAATATGATCCTGATCGTCGTTTCAACTGTCATGTTGGTGTTTTGTTTC
ATTCTGCACCAGGACCAATTcgttttcgaaaaaataaccaCTTCTGAATA
TGGTACTGAGGACCAGTTAAATGGAATATTTCTCGACCATtcataaATGG
GGAGGAAGTCTCGTCTATTCAAGAAGACGACCTCGTCAACCAAGACTCTA
AAAGAGTTTTTGAGTAATGCTGAGgtcAAGCAGAGGGAAAAGGAGCTATC
AAAGATGAAAGACAAGTTAGAGTCCAACCAAAAATATTCAGATGTATTGA
AGAAGAACCGACAGGTAAAGAATTTGGACGAGGAAGTCATATcaccaaat
aaaaagaaaaaaaaaagaaagaagaaaaataatccGAACCCTATAGTCAA
CAATGTATCGCAAGATTCAGATGCAAATAATAATTCCAGCCATGCCATTA
ACTTGACTTGCAAGTCACAAGCAAATCTTCAGCTGTGTAAAAAACACGAC
GTCTCACAAATGATCATAACGGATGATATCGGTAACAAGCAATTATTAAA
AGATCAAGATGCTGTCAAACAGGATAAGAATATCCTGCACACCCAATATG
TACATAAAGAAGATGCAGAGTGTTTACAACCAATCTCCAATGAAGAATGG
AAGATGGACGATGGGAAAGGAGCAGCGTACCATGCCTGTAAATGGTTCAA
TATGATCCTGATCGTCGTTTCAACTGTCATGTTGGTGTTTTGTTTCATTC
TGCACCAGGACCAATTcgttttcgaaaaaataaccaCTTCTGAATATGGT
ACTGAGGACCAGTTAAATGGAATATTTCTCGACCATtcataaATGGGGAG
GAAGTCTCGTCTATTCAAGAAGACGACCTCGTCAACCAAGACTCTAAAAG
AGTTTTTGAGTAATGCTGAGgtcAAGCAGAGGGAAAAGGAGCTATCAAAG
ATGAAAGACAAGTTAGAGTCCAACCAAAAATATTCAGATGTATTGAAGAA
GAACCGACAGGTAAAGAATTTGGACGAGGAAGTCATATcaccaaataaaa
agaaaaaaaaaagaaagaagaaaaataatccGAACCCTATAGTCAACAAT
GTATCGCAAGATTCAGATGCAAATAATAATTCCAGCCATGCCATTAACTT
GACTTGCAAGTCACAAGCAAATCTTCAGCTGTGTAAAAAACACGACGTCT
CACAAATGATCATAACGGATGATATCGGTAACAAGCAATTATTAAAAGAT
CAAGATGCTGTCAAACAGGATAAGAATATCCTGCACACCCAATATGTACA
TAAAGAAGATGCAGAGTGTTTACAACCAATCTCCAATGAAGAATGGAAGA
TGGACGATGGGAAAGGAGCAGCGTACCATGCCTGTAAATGGTTCAATATG
ATCCTGATCGTCGTTTCAACTGTCATGTTGGTGTTTTGTTTCATTCTGCA
CCAGGACCAATTcgttttcgaaaaaataaccaCTTCTGAATATGGTACTG
AGGACCAGTTAAATGGAATATTTCTCGACCATtcataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005606-exon-sc0000054-1491911889:795839..796027 | TCONS_00005606-exon-sc0000054-1491911889:795839..796027 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1510915933:795839..796027 | TCONS_00005606-exon-sc0000054-1510915933:795839..796027 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1575043694:795839..796027 | TCONS_00005606-exon-sc0000054-1575043694:795839..796027 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1491911889:798134..798531 | TCONS_00005606-exon-sc0000054-1491911889:798134..798531 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1510915933:798134..798531 | TCONS_00005606-exon-sc0000054-1510915933:798134..798531 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1575043694:798134..798531 | TCONS_00005606-exon-sc0000054-1575043694:798134..798531 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1491911889:799119..799371 | TCONS_00005606-exon-sc0000054-1491911889:799119..799371 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1510915933:799119..799371 | TCONS_00005606-exon-sc0000054-1510915933:799119..799371 | Clytia hemisphaerica | exon |
| TCONS_00005606-exon-sc0000054-1575043694:799119..799371 | TCONS_00005606-exon-sc0000054-1575043694:799119..799371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:795839..799371 + |
Blast
The following BLAST results are available for this feature:
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