|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005601 ID=TCONS_00005601|Name=TCONS_00005601|organism=Clytia hemisphaerica|type=transcript|length=242bp
TGATTGGATTTGAAACTTCGTTCATTTTATTCCTGTGCCATTGAATGTCC
GGTTACTCAACGATAATGGAACCTGGAGTCGAGTTATTGCAATACTTTGG
ACAATTACGACCACCGGATTTTGGAATGTCTGACACCAGAAGGGGAAATC
CAACCTTACCAAAGTTTACAAACTATGGATTTTCTCACCCATCGAAGCTA
GATCGTATACTGTTGGTGTACCACTATTGATCGAGAAACATT Run BLAST on NCBI transcript from alignment at sc0000054:746957..752569+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005601 ID=TCONS_00005601|Name=TCONS_00005601|organism=Clytia hemisphaerica|type=transcript|length=5613bp|location=Sequence derived from alignment at sc0000054:746957..752569+ (Clytia hemisphaerica)
TGATTGGATTTGAAACTTCGTTCATTTTATTCCTGTGCCATTGAATGTCC
GGTTACTCAACGATAATGGAACCTGGAGTCGAGTTATTGCAATACTTTGG
TAAGTAGTTTCTTACCTTTGTCAGTAATTCTTGGTTATTTCTAAGCTGTC
ACTTTCCTTCGAATATGTTTCGTTTATGTTTCTTATGAGGGATGTAACTT
GGGCTTAGATATGACTTCAGAAATATTTACGAACAGCCTTGTATTTTGCC
GAATTTCTGTGACACGCTTTTTCTAAGATATtcgaaaattatgaaaatgc
cAGTCAGGGCATAAAAACCTcgataaaaacaacaacattcaAACTAGTTT
TATCTGTTGATAGTTCACTCTTCACTGATAAAGCAAAGTAATTTTGCTAA
ATATAAATgaacatgaattattttttaaaaaggcattggtcaaaaaaagt
tcttgaacAAACCATCAAACAAGCCAATATTTTTTCGTATTTGTATTGCA
TTTTTTATGGCAATAATTCAAGAAGCTTGGAGTCGTTAAAATACttgcaa
aaaagattttctgttttcGCCGTAAGGTCTACAAATACAGTCTCGCTGCC
TGCatcttaaaaaatcaaactaaaaaTGCAAATGAAAACTGATTATACCA
TCAAGCGTGAAATTCTAATGCGAAAACTTAGATTTTCTTAAactatatca
aatttttttgcatCTTTTAGTTTTGTcgttttgtttaaaaaggtttataa
tGGGGTCATCAGTAAAtcatcaactgctccaacttgggactatctgacgc
aacatgggacggccattccaccaccatttcaccgaacctccaaagtcatt
ttgatttgagtttaatgaaccgtgtattaaaaaaatacacgatttctctt
tcggaccgagtaggcttttaaatcgaaatatgcaaaaaatctgtagtgga
acacgctCAAAAtgtgagcgtttgacgtcactcgcgcggcaagttacaca
ctcgctatttgttaatctCATCGGGCGGTAGGCGGctaggcggcgggcgt
tctctaattctccattcggAGTCCggccattttgaatgaaaacagaagtt
aaaaaagggcgcgctatcagtgaaagttatcgtcacatgttatgacagaa
agtatgattgataaactttgtggagttatcaaaacaaatttgttgtcaaa
gagatttaacagtaagtgaaaatacaggccagatatcaacaagtcccatg
ttgcgtacactcttcccatgttgcgtacactcgtcccaagcTGGACCAGT
TGACGGTAATTAGAAAAATGGTCGAAATTTTATGCTCTTTCCGCTAGTGC
CAACCATTTTCGATGATTCATaaaatactttttggacctacctggaggtc
ctatgataaattaacctttgttcgcCCGTCtctccgtccgtccgtctgtt
accagcttttctcgagattagcttattagttttttctgatttttggcaca
aagatgcaaaatggcaatgcccaaaatgtgacggagcccgattcttcgaa
aaaaaaattgccggaaatatgtcggaaaaccggtttcttgacattttctc
gagatttcatcattagttttttcagattttttgcttattaaagatgcgta
ttaacaatgcccataACATGACCAGgttccaatttttgagaaaaaaaatt
ttccggaaatatgccggaaatcaccgtttttctgaattttcattagactt
tttccttataattggttgttttttcattcaaaaacattattaatagcaat
gcccaccatcaagcatgtttcaattttcaataaaattgatttttgaagcc
gtaactattaaaaaatcgccggaaagacagtatttcttgaatttctcgaa
ctttactttatatttttttgtgaaattttgcacactgatgcaaaatgaca
atacctaaaatgtgacggagcccgattttcgaaaaagattttttttccgg
ccgaaaatgtcggaaatatgccgggaaaccggttttttgacattttctcg
aattttcatccttagttttttctgattttttgcagaaagatgcgtattcg
caatactcaaaacatgacagagttcgattttttgagaaatctttttttcc
ggccgaaaatgccggaattatgccggaaatcgccgtttttgcagattttc
attgggctttttcctatcatttcttagttttttctccaaaaaaaaacatc
attgatagcaattcccaccatcaatcatgattcgattgtcaataaaactg
atttctgcaaccggaactttctatatCTTTTTTCCCTTCTCCCCATCCCT
CTCCCCATCAagaatcaatgatgaaatttaaggCGTTTTGTGTTTTCGCT
AAGAATTATATTTTCTAACGGATTGTTtccgtttttctccttattgctat
ctaactttcatcatcaggtacacgtgaacccagtttataagaacattgag
gctgaaattcttcgaaaaattaagaacatcgtacgAACATGCctagcctc
agtttggaaaaaaatgacaagaaactacaatattttcctcttttcaagca
gttttaaacaaacttaGGAAATGATTTTCTAAATCcaaagtcaaatattg
tccaaattttatcaattttaagtgctctttattttgcatgatattgtcga
tttagagtagtctgaaaatttaagaacgcatcTAAGAACATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATCAA
AATGTAGGCTAAAATGGCAGATTTCTAcccttaaaattccaaaattttct
cgttgcccaaccatggtgggcaacatttatttaaattttcaatttggatc
cccaattttttttaaaccctgCATTTTAATGATGTACATGAAttctttct
tctcttcttcaGTTGGTTGACGTCCCATGTTGATACGTAAAAAAACTAGT
AATAATACTACCAGAAATGACAGTAGCTTTTTTGCTGGGACCTGAACCTT
GAAAGCAACTTTTGCAGGGACCTGAACTTTTATATTTCAACTGGGACCTG
AACCTTACtgaaaagtggggggacctaaatcgtaggggggacctaaattt
gttggggggacctagaaccccattcggagccatgcgtgaaaattgctaaa
aaaataggcacatccaggctcagccaaattttaggtgttctaataaaaaa
aaacgtgtaggttgaaaaacgaatctttatctataagaatcactatatAT
AAGCTtagatcaatattttttttgtcacggtagagcgcgatggtttgagt
tttctagaaaccttcTTTATTagtgggagtcacatgaaggattgagaaaa
ttgaaattttacactTTTCATCATATCTTTTGAAGCAGAAAAGATTTCTA
TATGAAACTTTCCAGAAATGTAATATAACTATAGAGaatgtgaaaaatta
aaaaaaaattctaaaaatagcctattccaaaaattttttttggaggtTGC
TAGTATTTGGATAAGCTGTGGAATGAAtggaaattttttacaaaatttca
ttccagggggtctggaacctaaaaaatgaaaaatttaagttttttcgagt
tttgaaattgaaaagtgattttttcaaaaatctactcCATTCATTCCATA
GCAAACCATAAACGGAGcaactcctgaaaatttcatgatcatAGAGCTCT
TTCCAATCCTGAAAAAACGTTGCCAAGGTGTGCGAAAACCCCCTGAaacc
tattttgagaaaatggtccGTAAAGTCAGAAGTGAGATATATATCTCTAT
TTTTCTGTAATAAATCaaccgttttacaaaattctttctgTGTTTGACTA
AAATGGAATAAAGTACTACTTTGTATACTTTAGAAAGGGCTCTGAAATAC
CAAAATAGTCCAGAAATTCCAAATCATCACTTTCACGTGATGCGCgccaa
tccttaaaattttgcgccAAACTCCACGTCAACATCGATTCACAACAAAA
ACcatattttcaatgtaatagaTCATCCTAGTATATTTTCCTCACTGCAT
CTGTCAGTTGTTAGTTAAGTTAATTTAAAGTTTATCTGTAGTAATACAAG
AATCCACTTAGACGTTGGACATCACAAATCTcgaaatcaataattttttc
accaaatctcaaagcttcatgtgactcccaccttaagctgtgcgtttttc
tgatagtgtattgtttttataaagaaaagcgtttaataacttttttactt
tttcaatagtgttgataatttctaccaatagatatgctttcattatatat
ttttgttatttgaccagttatgtcttatgtgtttcattgtttcaatgttc
attgattagttttggtaaccaggtaggtccataaaagtcaCTGGTTCATC
TTTTGTAGGACAATTACGACCACCGGATTTTGGAATGTCTGACACCAGAA
GGGGAAATCCAACCTTACCAAAGTTTACAAACTATGGATTTTCTCACCCA
TCGAAGCTAGATCGTATACTGTGAGTCTATCTTCACAGATTTCTATTAGT
TAAATTGAAGACTGTATTAAGACTGTATTAGGTAGTAATTTTCCCAAAtg
taaataaaagtaaaatctaGCTGCGCATGCGCTAGATTCCTGAAACATGC
TCAAATGACCACCAGAGTACGAAGAAGTTCACCGCTTCCGATAACCAATA
ACCTTGTAGAGAGTTTCAGCAACTGAAAGGCAATTTTATCTACAATCTAA
TCTAAGGAGGTTAAAAAAAACTATTCGAGGTTTTAGAGtttcgaattaag
gagactCGGCTGTGTTCAGTAATCTATGCTTGGTTCAATACAATTGAACT
TCATTCAAGTTAAATCTATTCAACCTGAAGCtcaaaaaagcaaagaaaat
ctTAATTTGGGCTTCACCTATGAGATTTAGTAATACACAAAATCGATGGT
TTAGgtcagtttttctttgtttctccTACCAGGTTGGTGTACCACTATTG
ATCGAGAAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005601-exon-sc0000054-1491911889:746957..747055 | TCONS_00005601-exon-sc0000054-1491911889:746957..747055 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1510915933:746957..747055 | TCONS_00005601-exon-sc0000054-1510915933:746957..747055 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1575043694:746957..747055 | TCONS_00005601-exon-sc0000054-1575043694:746957..747055 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1491911889:751965..752076 | TCONS_00005601-exon-sc0000054-1491911889:751965..752076 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1510915933:751965..752076 | TCONS_00005601-exon-sc0000054-1510915933:751965..752076 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1575043694:751965..752076 | TCONS_00005601-exon-sc0000054-1575043694:751965..752076 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1491911889:752539..752569 | TCONS_00005601-exon-sc0000054-1491911889:752539..752569 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1510915933:752539..752569 | TCONS_00005601-exon-sc0000054-1510915933:752539..752569 | Clytia hemisphaerica | exon |
| TCONS_00005601-exon-sc0000054-1575043694:752539..752569 | TCONS_00005601-exon-sc0000054-1575043694:752539..752569 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:746957..752569 + |
Blast
The following BLAST results are available for this feature:
|
