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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005583 ID=TCONS_00005583|Name=TCONS_00005583|organism=Clytia hemisphaerica|type=transcript|length=1099bp
GGATGGCTTAGTTAAGATCTGTCGAAAAATGGATAAAACGATAGATATTT
GCAAATCATACGTTATTAATCTTTCTTAAGACTAAAAAAATGTCATGCGA
CGCAATCTTTAGCACGTCAAACCGTGGTTTTTATCTGGCAGCTACCATCC
TATTTGGTTTGTCAGGAATTATTACAACCTTGGGAAACACTTTCTCCTTG
ATGGTTCTTTGGCAGCCGTCACAACgatcaaaatcaaacaaaattctAAC
ATCGTTAGTAATTAGTGATTGTTTGGTTGGTTTGTTATCAAATCCCATGG
CCATATTGATGATGTGGACTGGTCTGGAAATTACACCTTCAATTTGTAGA
TTAAACACTATAGCACTTTTCTTTGTTACCTGGTTTGGTTCTTCATCAGG
CTTTACAATACTTTTTATTACCTACGATCGCTATATAAGCATCACAAAAC
CATTCAAATACCATGACATTATCACTGATCTCAAAATCAATCTAATTCTT
GTGACGATTTGGGTTGGTAACTCAATAACGGCACTTTTAAATGCAATCAA
CAAAATACTTTTCCTGCATTTTCTCAACATTGGTTTTGTCATCGCATCTA
CTATCTTAATCACTGGATATTATCAAATCTGGAAAGCCGTCAAACAACGG
CAAACAAACATCCTATCGCTTAGTAGGAACGACCAAGAACATCTACGGAC
CCATATCCGACTCGCTAAGAAAATATTATTACTTATGATTGCGTTATTTG
GTGCTACCCTCCCAATAGTTGTTTATGCAATCGTTGTGTTGTTTCTTGAT
CATTTTACACGCCCTTATCAACCGTACTTGCACGTTGCTGGGattttctt
tctccttttcaaCTCTTGTGTTGACCCTTGCATTTACATTTGGAAAGATC
GTGAATTCAAACGTGCctgtaaaagatttcttcgTAGGAACACAGCCTTT
GCTTGGCTTTTCAACGGTGTTACGGTCAATCCCATAGCAGTAATTTCTTG
ATAAATAAACCTTCCCCAAATGTTTTTACATGGTTCAAACTACATCCTTC
CCTACAATATTCACGTGGAAAGCCTACTACTGTAATGACTTTCAGATTT Run BLAST on NCBI transcript from alignment at sc0000054:415177..417925+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005583 ID=TCONS_00005583|Name=TCONS_00005583|organism=Clytia hemisphaerica|type=transcript|length=2749bp|location=Sequence derived from alignment at sc0000054:415177..417925+ (Clytia hemisphaerica)
GGATGGCTTAGTTAAGATCTGTCGAAAAATGGATAAAACGATAGATATTT
GCAAATCATACGTTATTAATCTTTCTTAAGACTAAAAAAATGTCATGCGA
CGCAATCTTTAGCACGTCAAACCGTGGTTTTTATCTGGCAGCTACCATCC
TATTTGGTTTGTCAGGAATTATTACAACCTTGGGAAACACTTTCTCCTTG
ATGGTTCTTTGGCAGCCGTCACAACgatcaaaatcaaacaaaattctAAC
ATCGTTAGTAATTAGTGATTGTTTGGTTGGTTTGTTATCAAATCCCATGG
CCATATTGATGATGTGGACTGGTCTGGAAATTACACCTTCAATTTGTAGA
TTAAACACTATAGCACTTTTCTTTGTTACCTGGTTTGGTTCTTCATCAGG
CTTTACAATACTTTTTATTACCTACGATCGCTATATAAGCATCACAAAAC
CATTCAAATACCATGACATTATCACTGATCTCAAAATCAATCTAATTCTT
GTGACGATTTGGGTTGGTAACTCAATAACGGCACTTTTAAATGCAATCAA
CAAAATACTTTTCCTGCATTTTCTCAACATTGGTTTTGTCATCGCATCTA
CTATCTTAATCACTGGATATTATCAAATCTGGAAAGCCGTCAAACAACGG
CAAACAAACATCCTATCGGTTAGTAGGAATGACCAAGAACATCTACGGAC
CCATATCCGACTTGCTAAGAAAATCTTATTTCTTATGATCGCGTATTTTG
GTGCTGCCCTCCCAGTAGTTGTTTATGCAATCGTTGTGTTGTATGATCAT
TTTACACGCCCTTATCAACCGTACTTGTACGTCGTTGggattttctttgt
tcttttcaaCTCTTGTGTTGACCCTTGCATTTAGGATTCCCTCTTCAATT
GAGAACTTCCCTTCACTCACTAAGCATTCACTTCCCCCGTCAAGGGTTCC
AATCCTCAATTAAGGATTCCCCTCCCCACTAAGGGCGATCCCTATCATCG
TCGTTTTCAATTGAAGTAGTAAATTTAGACCATGACCTTTTTAAGTAAAT
ACGTGCTATGTGCGTAGTAATTAGTATCTGTTCGGAGATAACCTTCCGGG
CGGACGTCTTTGTTACTTTGAGATATCGAttcattttgctttaaactgcT
TTTTTATTACCATCTCCCTTCactttcatcttctttttcttttgaagtaG
TAATTGGAAGGAGATATCGAACCATTCTTACTTTAACCTTCTTCTTTATT
GCAATTTCCCTTTTAATatcatcttctttttctattAAAATCATAATCGG
AAGtcaattcaataaaatttagtCTTATTTCAGAATAGCTGTTTCTTAAA
TTGTTGTGGCGAGATGGAAATTTTACAAGCCCTTATTTCatttggttggt
tgttaaccagtttaaaacagttttgttactttttctaaagaacgcttcat
ttctattacttcaaatgaccaattatcaaaGTATCTTATATAAACTCCAT
CTAATCTGAAATTGTTaccattttttcttttccaatgCAAAATTTGATAG
TAAAAAAGTCAAAGAGAATAGGTGAGGGGAATAGAGGATTTCTTCATCTG
TTATAGCATCTGCTACCGCGTGTTTCTTTCGAAAAAACTTTGATTTATGG
TTAGTGTAGTTCAGATCTGTCAAAAAATGGATAAAACGATAGATATTTGC
AAATCATACGTTATTAATCATTCTTAATGGACTAAAAAAATGTCATGCGC
CGCAATCTTAAGCACGTCAAACTATGGTTTTAATGTGGCAGCTACCATCC
TATTTGGTTTGTCAGCAATTATTACAACCTTGGGAAACACTTTCTCCTTG
ATGGTTCTTTGGCAGCCGTCACAGCgatcaaaatcaaacaaaattctAAC
ATCGTTAGTAATTAGTGATTGTTTGGTTGGTTTGTTATCAAATCCCATGG
CCATATCGATGATGTGGACTGATCTGGAAATTACACCTTCAATTTGTAGA
TTAAACACTATAGCACTTTTCTTTGTTACCTGGTTTAGTTCTTCATCAGG
CTTTACAATACTTTTTATTACCTACGATCGCTTTACAAGCATCACAAAAC
CGTTCAAATACCATGACATTATCACCCATCTTAAAATCAATCTAATTCTT
GTGGCGATTTGGATTAGTAACTCAGTAACGGCACTTTTAAATGGATTCAA
CAAGAAATTTTTCCTATATTTTATTATCATTAGTTTAGTCATCGGATATA
CTATCTTAATTGCGGGATATTATCAGATCTGGAAAGCCGTCAACCAACGG
CAAACCAACATCCTATCGCTTAGTAGGAACGACCAAGAACATCTACGGAC
CCATATCCGACTCGCTAAGAAAATATTATTACTTATGATTGCGTTATTTG
GTGCTACCCTCCCAATAGTTGTTTATGCAATCGTTGTGTTGTTTCTTGAT
CATTTTACACGCCCTTATCAACCGTACTTGCACGTTGCTGGGattttctt
tctccttttcaaCTCTTGTGTTGACCCTTGCATTTACATTTGGAAAGATC
GTGAATTCAAACGTGCctgtaaaagatttcttcgTAGGAACACAGCCTTT
GCTTGGCTTTTCAACGGTGTTACGGTCAATCCCATAGCAGTAATTTCTTG
ATAAATAAACCTTCCCCAAATGTTTTTACATGGTTCAAACTACATCCTTC
CCTACAATATTCACGTGGAAAGCCTACTACTGTAATGACTTTCAGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005583-exon-sc0000054-1491911889:415177..415835 | TCONS_00005583-exon-sc0000054-1491911889:415177..415835 | Clytia hemisphaerica | exon |
| TCONS_00005583-exon-sc0000054-1510915933:415177..415835 | TCONS_00005583-exon-sc0000054-1510915933:415177..415835 | Clytia hemisphaerica | exon |
| TCONS_00005583-exon-sc0000054-1575043694:415177..415835 | TCONS_00005583-exon-sc0000054-1575043694:415177..415835 | Clytia hemisphaerica | exon |
| TCONS_00005583-exon-sc0000054-1491911889:417486..417925 | TCONS_00005583-exon-sc0000054-1491911889:417486..417925 | Clytia hemisphaerica | exon |
| TCONS_00005583-exon-sc0000054-1510915933:417486..417925 | TCONS_00005583-exon-sc0000054-1510915933:417486..417925 | Clytia hemisphaerica | exon |
| TCONS_00005583-exon-sc0000054-1575043694:417486..417925 | TCONS_00005583-exon-sc0000054-1575043694:417486..417925 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:415177..417925 + |
Blast
The following BLAST results are available for this feature:
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