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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005580 ID=TCONS_00005580|Name=TCONS_00005580|organism=Clytia hemisphaerica|type=transcript|length=1107bp
GACGCCCATGTGTGATCGCCCAATTGTTTAAGTACGTCTCGCAGACCACG
CGTTCAGTCCGGGGTAAGTCtcaaaaagtaatgttaaaatCCTCGGACAC
GCACCAAGAAAATCCCTGGAGTCCGGGGAATCAGCAGGGTCGTTCGAACA
TAATTCAACTTTACCAGAATCTTTTAGTTTCGTGACTGTTCGATTTGATT
GCGGTAATCTAACACCTATCGTTTGATAATGTTAGATTAGATTGGtaccc
gtgaaaaagggtaatttgCATCATTTGAGGGAAACTTTACATTGCCTCCA
ANNNNNNNNNNNNNNNNNNNNNNNNGATTGACATCACCTGgatatttatt
acaaattatctattgacagtttcttcttctctattcCTATTTCAGCTTTA
TGGTTTTGCCTTCCAGCCTTCGTTCAGTCACCATGACAAATACCATATTA
ACCATTAATTAAAGTAGTTTTACACGTTGGATGTACCATCAACTGCttta
aagccagattgacattatatgtttttacaaggtctgaatcgctgcttCAA
ATACGCTgagtttgcacaaagatagcagctgttcaaccaatcatcaaact
tcattttaacataacattttaatgacaagagagttttgacttcaaaatgt
tgaacaagaattggaatgaattgtctgcgtttttaatggttctgtgcaat
gtttgtgcaatgggacaccaaaacagcaaccattttaaccgaacctccac
agaatcatcttttttgtactgcCCAAGAAACATGGATCTGTgaatcatct
tttttgtactgtCCAAGAAACATGGATCTGTTTGTATGTTGTTGAAAAGG
ATGTGACGATGGAGAGAAAAAGCTGACCAGAAAGCAGTATGTCCCATGTT
ATCTCAAGTAATCCcattttagagcagttgacagtacacAAACTTGACAT
TAACACTCCTTTTGTTGGAGAAATTCCTGAAGGATATTTCATGTTATGTT
CCTGTTGTTTGGTTTATTTAGAATCATTTTGGTTTTGGAATGCTTCTGTA
TCCACTGTattctttacaaaacaatattacattacGATATAGACAACAAC
TTAGCTG Run BLAST on NCBI transcript from alignment at sc0000054:394728..395834+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005580 ID=TCONS_00005580|Name=TCONS_00005580|organism=Clytia hemisphaerica|type=transcript|length=1107bp|location=Sequence derived from alignment at sc0000054:394728..395834+ (Clytia hemisphaerica)
GACGCCCATGTGTGATCGCCCAATTGTTTAAGTACGTCTCGCAGACCACG
CGTTCAGTCCGGGGTAAGTCtcaaaaagtaatgttaaaatCCTCGGACAC
GCACCAAGAAAATCCCTGGAGTCCGGGGAATCAGCAGGGTCGTTCGAACA
TAATTCAACTTTACCAGAATCTTTTAGTTTCGTGACTGTTCGATTTGATT
GCGGTAATCTAACACCTATCGTTTGATAATGTTAGATTAGATTGGtaccc
gtgaaaaagggtaatttgCATCATTTGAGGGAAACTTTACATTGCCTCCA
ANNNNNNNNNNNNNNNNNNNNNNNNGATTGACATCACCTGgatatttatt
acaaattatctattgacagtttcttcttctctattcCTATTTCAGCTTTA
TGGTTTTGCCTTCCAGCCTTCGTTCAGTCACCATGACAAATACCATATTA
ACCATTAATTAAAGTAGTTTTACACGTTGGATGTACCATCAACTGCttta
aagccagattgacattatatgtttttacaaggtctgaatcgctgcttCAA
ATACGCTgagtttgcacaaagatagcagctgttcaaccaatcatcaaact
tcattttaacataacattttaatgacaagagagttttgacttcaaaatgt
tgaacaagaattggaatgaattgtctgcgtttttaatggttctgtgcaat
gtttgtgcaatgggacaccaaaacagcaaccattttaaccgaacctccac
agaatcatcttttttgtactgcCCAAGAAACATGGATCTGTgaatcatct
tttttgtactgtCCAAGAAACATGGATCTGTTTGTATGTTGTTGAAAAGG
ATGTGACGATGGAGAGAAAAAGCTGACCAGAAAGCAGTATGTCCCATGTT
ATCTCAAGTAATCCcattttagagcagttgacagtacacAAACTTGACAT
TAACACTCCTTTTGTTGGAGAAATTCCTGAAGGATATTTCATGTTATGTT
CCTGTTGTTTGGTTTATTTAGAATCATTTTGGTTTTGGAATGCTTCTGTA
TCCACTGTattctttacaaaacaatattacattacGATATAGACAACAAC
TTAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005580-exon-sc0000054-1491911889:394728..395834 | TCONS_00005580-exon-sc0000054-1491911889:394728..395834 | Clytia hemisphaerica | exon |
| TCONS_00005580-exon-sc0000054-1510915933:394728..395834 | TCONS_00005580-exon-sc0000054-1510915933:394728..395834 | Clytia hemisphaerica | exon |
| TCONS_00005580-exon-sc0000054-1575043694:394728..395834 | TCONS_00005580-exon-sc0000054-1575043694:394728..395834 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:394728..395834 + |
Blast
The following BLAST results are available for this feature:
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