TCONS_00005579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005579
Unique NameTCONS_00005579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005579 ID=TCONS_00005579|Name=TCONS_00005579|organism=Clytia hemisphaerica|type=transcript|length=1471bp
AAAAGTTCCGTATTTTCTTTCACTGCTGGTATAAAAATTGCGTAATAATC
ACTTTAACAACGTTAAGatgaaaattgaaaaaatatgttgAACAACACGA
GCTTGGAGATGTCTGTAGGCGTGAATGGAGTTTCGTGCCCGCCTTTCGGT
TTACTGCTGGTGGGAACGCCCTTAGCAACTAATATTTATTTATCTATTGC
AAGTGTAGCAACCTTTCTTTCCTTGTGTGCTATCGTGCTGAATCTTCTGG
TTTTAATAGCGCTTTTATCATTACAACAATACCGTACAAACTTTTTACTC
ATCCTTTTAAACGTGGTTGACTTGTTCAGTGGATTGATTTTGCTCCCTTC
CTATGCTTACTACATGTGGGAACTACATCAAGGAAGGTtggaatgtattt
ttggtaGAACATTAATGGTGATAGGGTATTGTTTGACAATCATTAGTTGC
TCCACTATCGCTTTCATCACAGCACAACTTTACAGTGCTATTTTCAATCC
GTTTGGCCATCACCGCTGGTCTCGAAAGTCAAACTGTCTACCTATCGTAT
TCATGTGTTGGTTTGGCCTTGCTGTTTTGGTGTTTCTGTTTGCATTTATA
CTGACAGTGTATTGGAAAATGTTTAAGTTGTGCGTTGGAGGGATTTTCTT
TACCATCTACGTGATTTTAGTGATTGCGCACAAAAAAGTATATGCAGGCA
CTCAACGCATCGCCAAGTTTACGCATCACCAACAAAACGATCAAAAACTC
GTCCTCCAACGACGTACATTTAAAATGATAACGACGGTTTTGATAGCATT
CGGTTTATGTTACCTGCCGTATATCATTTTCGCTCTTTACATCGCTATCA
AAGGGATCAATCCTGAAATAAGAAGTTTCTATGGACCATGGGTGGAAGTG
ATGGCTATGAGTAGTTCAGTTTTCAATCCCGTCATCTATTGTTTTCGTTT
GAAATCCATACGAAGAAAAGTCATCATTCTGTTATGTTGTAAAAAGACAT
TGCGTCAAACATCTCGTAAATTCTCCGTCATCAAACAACAGACTGGCATA
CCACTGACCTCAATCAGTTTAAGTGTGCTGACGAGTAGCATTACGTCATT
GTCCAGCATTAAGTTCAACCATCAGAGTAAATACCATGACAAAAACAGCA
ACAATCACAAAATCATTTGCAAAACACTCAGTCAACCCAAAAATGTACTC
AATCccaaaaacaaagacatttcaACATTGGACGGGATTCATAGACATCA
AGCTTCCGTATTGAAGCAAGCCCGCTATTTATATATTCCGTGATTTGCTT
TTATTAGTCACATGGGATTAGTTTTTGGGAAAAAACAAATACAGTTaacg
ttctctaattcgatcttcaaggggaattggattttcatcggataagggag
cttatcgaataagggaacgtcgtttatgagagtttcttgttgacagggac
tttaaatttcatcgaataagg
Run BLAST on NCBI

transcript from alignment at sc0000054:358183..359871+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005579 ID=TCONS_00005579|Name=TCONS_00005579|organism=Clytia hemisphaerica|type=transcript|length=1689bp|location=Sequence derived from alignment at sc0000054:358183..359871+ (Clytia hemisphaerica)
AAAAGTTCCGTATTTTCTTTCACTGCTGGTATAAAAATTGCGTAATAATC
ACTTTAACAACGTTAAGGTATGCCCTTGTTATTTCCGGTTTGAGAGCTAA
GTAGAAACGAAATTTTAAACCATAAATGCTACAATGTAAACGTTGTATTT
GACAATAGATTTTCATATATTTGAATTCTGCAGGATTTAGACATCGAGCT
TGAATCAACATGATTAATTCTACTGGCTGTATTTGTCATTAAACTTTCAT
CGTATGCAATTTAACATTTGTTTTTTCTCCGAcagatgaaaattgaaaaa
atatgttgAACAACACGAGCTTGGAGATGTCTGTAGGCGTGAATGGAGTT
TCGTGCCCGCCTTTCGGTTTACTGCTGGTGGGAACGCCCTTAGCAACTAA
TATTTATTTATCTATTGCAAGTGTAGCAACCTTTCTTTCCTTGTGTGCTA
TCGTGCTGAATCTTCTGGTTTTAATAGCGCTTTTATCATTACAACAATAC
CGTACAAACTTTTTACTCATCCTTTTAAACGTGGTTGACTTGTTCAGTGG
ATTGATTTTGCTCCCTTCCTATGCTTACTACATGTGGGAACTACATCAAG
GAAGGTtggaatgtatttttggtaGAACATTAATGGTGATAGGGTATTGT
TTGACAATCATTAGTTGCTCCACTATCGCTTTCATCACAGCACAACTTTA
CAGTGCTATTTTCAATCCGTTTGGCCATCACCGCTGGTCTCGAAAGTCAA
ACTGTCTACCTATCGTATTCATGTGTTGGTTTGGCCTTGCTGTTTTGGTG
TTTCTGTTTGCATTTATACTGACAGTGTATTGGAAAATGTTTAAGTTGTG
CGTTGGAGGGATTTTCTTTACCATCTACGTGATTTTAGTGATTGCGCACA
AAAAAGTATATGCAGGCACTCAACGCATCGCCAAGTTTACGCATCACCAA
CAAAACGATCAAAAACTCGTCCTCCAACGACGTACATTTAAAATGATAAC
GACGGTTTTGATAGCATTCGGTTTATGTTACCTGCCGTATATCATTTTCG
CTCTTTACATCGCTATCAAAGGGATCAATCCTGAAATAAGAAGTTTCTAT
GGACCATGGGTGGAAGTGATGGCTATGAGTAGTTCAGTTTTCAATCCCGT
CATCTATTGTTTTCGTTTGAAATCCATACGAAGAAAAGTCATCATTCTGT
TATGTTGTAAAAAGACATTGCGTCAAACATCTCGTAAATTCTCCGTCATC
AAACAACAGACTGGCATACCACTGACCTCAATCAGTTTAAGTGTGCTGAC
GAGTAGCATTACGTCATTGTCCAGCATTAAGTTCAACCATCAGAGTAAAT
ACCATGACAAAAACAGCAACAATCACAAAATCATTTGCAAAACACTCAGT
CAACCCAAAAATGTACTCAATCccaaaaacaaagacatttcaACATTGGA
CGGGATTCATAGACATCAAGCTTCCGTATTGAAGCAAGCCCGCTATTTAT
ATATTCCGTGATTTGCTTTTATTAGTCACATGGGATTAGTTTTTGGGAAA
AAACAAATACAGTTaacgttctctaattcgatcttcaaggggaattggat
tttcatcggataagggagcttatcgaataagggaacgtcgtttatgagag
tttcttgttgacagggactttaaatttcatcgaataagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003169XLOC_003169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005579-exon-sc0000054-1491911889:358183..358249TCONS_00005579-exon-sc0000054-1491911889:358183..358249Clytia hemisphaericaexon
TCONS_00005579-exon-sc0000054-1510915933:358183..358249TCONS_00005579-exon-sc0000054-1510915933:358183..358249Clytia hemisphaericaexon
TCONS_00005579-exon-sc0000054-1575043694:358183..358249TCONS_00005579-exon-sc0000054-1575043694:358183..358249Clytia hemisphaericaexon
TCONS_00005579-exon-sc0000054-1491911889:358468..359871TCONS_00005579-exon-sc0000054-1491911889:358468..359871Clytia hemisphaericaexon
TCONS_00005579-exon-sc0000054-1510915933:358468..359871TCONS_00005579-exon-sc0000054-1510915933:358468..359871Clytia hemisphaericaexon
TCONS_00005579-exon-sc0000054-1575043694:358468..359871TCONS_00005579-exon-sc0000054-1575043694:358468..359871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:358183..359871 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.164484	0	0	0	0	0	0	0	0	0.35499	0	0	0	0	0	0.972893	1.5399	0	0	0	0.231382	0.017291	1.95184	0	0	3.91528e-07	1.68157	1.12728	1.99455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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