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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005576 ID=TCONS_00005576|Name=TCONS_00005576|organism=Clytia hemisphaerica|type=transcript|length=2914bpRun BLAST on NCBI transcript from alignment at sc0000054:341854..348559+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005576 ID=TCONS_00005576|Name=TCONS_00005576|organism=Clytia hemisphaerica|type=transcript|length=6706bp|location=Sequence derived from alignment at sc0000054:341854..348559+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005576 vs. Swiss-Prot (Human)
Match: DOCK9 (Dedicator of cytokinesis protein 9 OS=Homo sapiens GN=DOCK9 PE=1 SV=2) HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0 Identity = 365/1011 (36.10%), Postives = 543/1011 (53.71%), Query Frame = 2
Query: 2 LKCLYQRNGVCTFTHQIVCPVLHHNTTPAFFEEIKILLPPQLEKKHHVLFTFHHVSVEQPKESKEKKKDVM-TPVGYSWMAVLDQHVIRGDENSLPVALYLPESYMYSDTVNEGLNGNMGGKTNGPDIKWADGKGQKIFKVNAKLISTIYSQDSHINNLFSHWALCGDGRPSADVEMSRLLKLMHAVDVELVIKFLPVVLNMLFHVLIQTNNEDVAVNVVSLLIRITSMMHTANKNHFLKSYVEYTFQME---SIKNKTVHEELAKNLIFYLRLGADPTMIANILQHSWFFFDVMVKSMAHSHMGRAKKNAFESRKGRFNNDYTKTLENLFKVFIDQLVNRAKEKATVVKEANVNLGKFIRDCLTHMDRGFVFEIVNYLKDQYNPPDTQ-MFELKFELLRCISEHEHFVPLNFPFD-----IRKKGDVH-ESTLNDYYCKRHFLVGVLLREFSNALYQPKAIRKYALRVLRNLLAKHEFDERYIGNEKQSRIAGLYIPYLTMMLEHSLRFHKNLDRP-------KIDDSLLSIHRIAP-TTPSH----------------DGNMSPILMKRXXXXXXXXXXXXXXIMSLTGSGKVPP------------------------ILPFEDDEAREFLLCFSFLLKNLHSSIVVDWWREILTTPIKRPHVNAATFYYRQCEKHFAKFLAIIDFFDLLEQCVKRLKYNGSANLEKTNVTAESTKQFFENKYASLTRPSPRLSVGNSHRRQLXXXXXXXXXXXDYELEKKSLLEANLANEVAVTVLDMIELFITHFKFHLEQDDGDNVLMKKLFNVLMTFLRIGQSEEVMKYVFASLRSFMHKFSSVLFHGSANVCGVLCYEILRLCNSKIESVRTQACCFMYLLMRSNYEFSGKGC-ARVHHQVIVAVSKLIA--AGMNRHSMLQSLIILKNYSVDDKGMKSTEFPAEVRDLIKKVHTVLLATAQMKEHEDDHEVLVDLQYSLAKSYSSTPELRQTWLQSMALIHEKHGDYSEVCV 2848
LKC+Y R G FT VLHH+ P F++EIKI LP QL +KHH+L TF HVS + + KK+DV+ T VGYSW+ +L + E +PV+ LP Y+ G G+ GP+IKW DG G+ + K++ L+ST+Y+QD H++N F + G + E+ + LK +HA++ ++I FLP +LN LF VL + E+VAVNV ++I + + H L+SYV+Y ++ E + + KTVHEEL K++ L+ AD +L++SWFFFDV++KSMA + +K R RF Y +E + + + + + ++ K AN +L FI+ C T MDRGFVF+ +N + P D + +FE KFE LR + HEH++PLN P I++ D+ + +L D +C+ HFLVG+LLRE AL + + +R A+ VL+NLL KH FD+RY Q+RIA LY+P +++E+ R + P + D L++ + P TP G SP + S + S++S +P + E + L+CF ++LK++ + +W + T+ ++DFF + E C+ + +Y G + +T + +Q SL L+ +S+ D ++ +SLLEAN+A EV +T LD + LF FK L D G N LMKK+F+V + FL+ QSE +K VF +LRS ++KF S + G A++C LCYEIL+ CNSK+ S+RT+A +Y LMR+N++++GK R H QVI++VS+LIA G+ QSL I+ N + D+ +K T F ++V+DL K++ TVL+ATAQMKEHE+D E+LVDLQYSLAKSY+STPELR+TWL SMA IH K+GD SE +
Sbjct: 681 LKCIYGRPGGPVFTRSAFAAVLHHHQNPEFYDEIKIELPTQLHEKHHLLLTFFHVSCDNSSKGSTKKRDVVETQVGYSWLPLLKDGRVVTSEQHIPVSANLPSGYL-------GYQELGMGRHYGPEIKWVDG-GKPLLKISTHLVSTVYTQDQHLHNFFQYCQKTESGAQALGNELVKYLKSLHAMEGHVMIAFLPTILNQLFRVLTRATQEEVAVNVTRVIIHVVAQCHEEGLESHLRSYVKYAYKAEPYVASEYKTVHEELTKSMTTILKPSADFLTSNKLLKYSWFFFDVLIKSMAQHLIENSKVKLL--RNQRFPASYHHAVETVVNMLMPHITQKFRDNPEASKNANHSLAVFIKRCFTFMDRGFVFKQINNYISCFAPGDPKTLFEYKFEFLRVVCNHEHYIPLNLPMPFGKGRIQRYQDLQLDYSLTDEFCRNHFLVGLLLREVGTALQEFREVRLIAISVLKNLLIKHSFDDRYASRSHQARIATLYLPLFGLLIENVQRINVRDVSPFPVNAGMTVKDESLALPAVNPLVTPQKGSTLDNSLHKDLLGAISGIASPYTTSTPNINSVRNADSRGSLISTDSGNSLPERNSEKSNSLDKHQQSSTLGNSVVRCDKLDQSEIKSLLMCFLYILKSMSDDALFTYWNKASTS-------------------------ELMDFFTISEVCLHQFQYMGKRYIARTGMMHARLQQL-----GSLDN---SLTFNHSYGHS------------DADVLHQSLLEANIATEVCLTALDTLSLFTLAFKNQLLADHGHNPLMKKVFDVYLCFLQKHQSETALKNVFTALRSLIYKFPSTFYEGRADMCAALCYEILKCCNSKLSSIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRLIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAM 1636 The following BLAST results are available for this feature:
BLAST of TCONS_00005576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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