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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005574 ID=TCONS_00005574|Name=TCONS_00005574|organism=Clytia hemisphaerica|type=transcript|length=3564bpRun BLAST on NCBI transcript from alignment at sc0000054:338878..348559+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005574 ID=TCONS_00005574|Name=TCONS_00005574|organism=Clytia hemisphaerica|type=transcript|length=9682bp|location=Sequence derived from alignment at sc0000054:338878..348559+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00005574 vs. Swiss-Prot (Human)
Match: DOC11 (Dedicator of cytokinesis protein 11 OS=Homo sapiens GN=DOCK11 PE=1 SV=2) HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0 Identity = 465/1223 (38.02%), Postives = 684/1223 (55.93%), Query Frame = 1
Query: 4 VFSVETAHQEIFLVLRINKVLQGGITACAEPYIKGSDNVKAAQKVSKQVQLAGKRLGKLRMPFGWCAKNVFKNEVGDLDLESGFGSIYKQESSRLTDDELLRMLQDLKNEYKINRTVIPGSFQSKLSPITSNFPNCYSPSLIPLKPFSRSEDVEASVEVQSFCPMKTEIAVPFNEYVNNFYIYPISLNYSSQKAL-KARNISCTIQFKDLDDLSAKPLKCLYQRNGVCTFTHQIVCPVLHHNTTPAFFEEIKILLPPQLEKKHHVLFTFHHVSVEQPKESKEKKKD-VMTPVGYSWMAVLDQHVIRGDENSLPVALYLPESYMYSDTVNEGLNGNMGGKTNGPDIKWADGKGQKIFKVNAKLISTIYSQDSHINNLFSHWALCGDGRPSADVEMSRLLKLMHAVDVELVIKFLPVVLNMLFHVLIQ-TNNEDVAVNVVSLLIRITSMMHTANKNHFLKSYVEYTFQME---SIKNKTVHEELAKNLIFYLRLGADPTMIANILQHSWFFFDVMVKSMAHSHMGRAKKNAFESRKGRFNNDYTKTLENLFKVFIDQLVNRAKEKATVVKEANVNLGKFIRDCLTHMDRGFVFEIVNYLKDQYNPPDTQMF-ELKFELLRCISEHEHFVPLNFPFDI------RKKGDVHESTLNDYYCKRHFLVGVLLREFSNALYQPKAIRKYALRVLRNLLAKHEFDERYIGNEKQSRIAGLYIPYLTMMLEHSLRFHKNLDRPKIDDSLLSIHRIAP-----------TTPSHDGNMSPIL------------MKRXXXXXXXXXXXXXXIMSLTGSGK----------VPPILPFEDDEAREFLLCFSFLLKNLHSSIVVDWWREILTTPIKRPHVNAATFYYRQCEKHFAKFLAIIDFFDLLEQCVKRLKYNGSANLEKTNVTAESTKQFFENKYASLTRPSPRLSVGNSHRR-------QLXXXXXXXXXXXDYELEKKSLLEANLANEVAVTVLDMIELFITHFKFHLEQDDGDNVLMKKLFNVLMTFLRIGQSEEVMKYVFASLRSFMHKFSSVLFHGSANVCGVLCYEILRLCNSKIESVRTQACCFMYLLMRSNYEFSG-KGCARVHHQVIVAVSKLIA----AGMNRHSMLQSLIILKNYSVDDKGMKSTEFPAEVRDLIKKVHTVLLATAQMKEHEDDHEVLVDLQYSLAKSYSSTPELRQTWLQSMALIHEKHGDYSEVCV 3498
+FSV H EIFLV RI KVLQG IT CAEPYIK SD VK AQKV + + RLG+ RMPF W A+ +FK+ G LDL+ F +YKQ+SS+L+ +++L++L + K K +IPG + + + NC + S +PLKPF ++ +VEV+ F P T+ PF Y N+ Y+YP+ L Y SQK KARNI+ ++F+D D+ A LKC+Y + FT V HHN P F++EIKI LP L +KHH+LFTF+HVS E + KK+D V TPVG++W+ +L I E LPV+ LP Y+ LN + DIKW DG + + K+ + L STIY+QD H++ F H L G E+ + LK +HA++++++I+FLPV+L LF VL T+ +DV +N +L+ I S H + +L+S+++Y+F+ E + + + +HE LA +I L+ AD I +L++SWFFF+++ KSMA + K R RF Y L +L I + R E + N +L F++ CLT MDRGF+F ++N ++P D ++ E KFE L+ I HEH++PLN P R + E +L+D YCK HFLVG+LLRE S AL IR A+ V++NLL KH FD RY +Q++IA LY+P++ ++LE N+ R D+L S + T+P++ G++S +KR + + + +G+ V + E R L+C+ +++K + ++ +W ++ +P + +I+ LLE C+ +Y G N+ + + A +K F ++ S T P+ R G R + S + + ++ ++ ++LLE N A EV++TVLD I F FK L +DG N LMKK+F++ + FL+ GQSE +K+VFASLR+F+ KF S F G N+C CYE+L+ C SKI S R +A +YLLMR+N+E++ K R H Q+I+AVS+LIA +G +R +SL I+ N++ D+ MK+T FPAEV+DL K++ TVL+ATAQMKEHE D E+L+DLQYSLAKSY+STPELR+TWL SMA IH K+GD+SE +
Sbjct: 465 IFSVTNPHPEIFLVARIEKVLQGNITHCAEPYIKNSDPVKTAQKVHRTAKQVCSRLGQYRMPFAWAARPIFKDTQGSLDLDGRFSPLYKQDSSKLSSEDILKLLSEYKKPEKTKLQIIPGQLNITVECVPVDLSNCITSSYVPLKPFEKNCQ-NITVEVEEFVPEMTKYCYPFTIYKNHLYVYPLQLKYDSQKTFAKARNIAVCVEFRDSDESDASALKCIYGKPAGSVFTTNAYAVVSHHNQNPEFYDEIKIELPIHLHQKHHLLFTFYHVSCEINTKGTTKKQDTVETPVGFAWVPLLKDGRIITFEQQLPVSANLPPGYL-------NLNDAESRRQCNVDIKWVDG-AKPLLKIKSHLESTIYTQDLHVHKFFHHCQLIQSGSKEVPGELIKYLKCLHAMEIQVMIQFLPVILMQLFRVLTNMTHEDDVPINCTMVLLHIVSKCHEEGLDSYLRSFIKYSFRPEKPSAPQAQLIHETLATTMIAILKQSADFLSINKLLKYSWFFFEIIAKSMATYLLEENKIKL--PRGQRFPETYHHVLHSLLLAIIPHVTIRYAEIPDESRNVNYSLASFLKRCLTLMDRGFIFNLINDYISGFSPKDPKVLAEYKFEFLQTICNHEHYIPLNLPMAFAKPKLQRVQDSNLEYSLSDEYCKHHFLVGLLLRETSIALQDNYEIRYTAISVIKNLLIKHAFDTRYQHKNQQAKIAQLYLPFVGLLLE-------NIQRLAGRDTLYSCAAMPNSASRDEFPCGFTSPANRGSLSTDKDTAYGSFQNGHGIKREDSRGSLIPEGATGFPDQGNTGENTRQSSTRSSVSQYNRLDQYEIRSLLMCYLYIVKMISEDTLLTYWNKV--SPQE-----------------------LINILILLEVCLFHFRYMGKRNIARVH-DAWLSKHFGIDR-KSQTMPALRNRSGVMQARLQHLSSLESSFTLNHSSTTTEADIFHQALLEGNTATEVSLTVLDTISFFTQCFKTQLLNNDGHNPLMKKVFDIHLAFLKNGQSEVSLKHVFASLRAFISKFPSAFFKGRVNMCAAFCYEVLKCCTSKISSTRNEASALLYLLMRNNFEYTKRKTFLRTHLQIIIAVSQLIADVALSGGSRFQ--ESLFIINNFANSDRPMKATAFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLIDLQYSLAKSYASTPELRKTWLDSMAKIHVKNGDFSEAAM 1640 The following BLAST results are available for this feature:
BLAST of TCONS_00005574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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