TCONS_00005571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005571
Unique NameTCONS_00005571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005571 ID=TCONS_00005571|Name=TCONS_00005571|organism=Clytia hemisphaerica|type=transcript|length=595bp
gtcCAATCTGCAAGATTTACTAAATTGCATCTGTTACGTACAAAAATATC
TACTTTCCAAAAGAatgtctttttattgaaaaaacaaGTTGAATCTATGG
CTTTCACAAAACATTTACTTCAATCTTTaccatcaaaaatggtttccaaa
taaaggaaaaactttaattgctattttctcaaaatgagcaaaatggactt
aggccccttttgaaatAAGGTAGCAAAATAATCATAAGACAGGAAGGTTC
TTTTAAGCAAACAATATTGTATAAGTATAAGTATAGTTGTTGGTATATTG
ATCATTTCAAACTGCAATTTGTCCTGAGCTGCTATAAAAATAAACTCTGT
GTCTCGACAAGTTAGTGATAAAGCAAATACAAAAGAGTTGTAAAGACATC
AACAGTTTTTTTtacatcaaattattttcattgcAAAATTTTTAATGTGA
GTACAAAAATGCGTTTACCTTTCAAACAGGATTTGGTCACTGGTGTTCAC
CCTATTGATTATGAAAAAGAATTGGAGGACAGGAGGACTGAAATTAAGAG
GGATCGACACAATGATTTATTGCTCTTCCCTGACGATGACATTTC
Run BLAST on NCBI

transcript from alignment at sc0000054:330768..331362+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005571 ID=TCONS_00005571|Name=TCONS_00005571|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0000054:330768..331362+ (Clytia hemisphaerica)
gtcCAATCTGCAAGATTTACTAAATTGCATCTGTTACGTACAAAAATATC
TACTTTCCAAAAGAatgtctttttattgaaaaaacaaGTTGAATCTATGG
CTTTCACAAAACATTTACTTCAATCTTTaccatcaaaaatggtttccaaa
taaaggaaaaactttaattgctattttctcaaaatgagcaaaatggactt
aggccccttttgaaatAAGGTAGCAAAATAATCATAAGACAGGAAGGTTC
TTTTAAGCAAACAATATTGTATAAGTATAAGTATAGTTGTTGGTATATTG
ATCATTTCAAACTGCAATTTGTCCTGAGCTGCTATAAAAATAAACTCTGT
GTCTCGACAAGTTAGTGATAAAGCAAATACAAAAGAGTTGTAAAGACATC
AACAGTTTTTTTtacatcaaattattttcattgcAAAATTTTTAATGTGA
GTACAAAAATGCGTTTACCTTTCAAACAGGATTTGGTCACTGGTGTTCAC
CCTATTGATTATGAAAAAGAATTGGAGGACAGGAGGACTGAAATTAAGAG
GGATCGACACAATGATTTATTGCTCTTCCCTGACGATGACATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003169XLOC_003169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005571-exon-sc0000054-1491911889:330768..331362TCONS_00005571-exon-sc0000054-1491911889:330768..331362Clytia hemisphaericaexon
TCONS_00005571-exon-sc0000054-1510915933:330768..331362TCONS_00005571-exon-sc0000054-1510915933:330768..331362Clytia hemisphaericaexon
TCONS_00005571-exon-sc0000054-1575043694:330768..331362TCONS_00005571-exon-sc0000054-1575043694:330768..331362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:330768..331362 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101817	0.423261	1.07609	0.865467	0	0	0	0	0	0.199827	0	0	0	0	0	0	0	0	0	0	0	0	0.229194	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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