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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005557 ID=TCONS_00005557|Name=TCONS_00005557|organism=Clytia hemisphaerica|type=transcript|length=1315bp
agaaaacaaaaaataaaagtgacaaagaaaaaagagatcGGATAAACGAT
AAAATGGAGAAGAATGGAAACAATCACAGCGAAACAAGAAGAAATCCATC
AGGGAATGGTGCCACAAACAGAGAATATGTCTTATTTGCTGGTAACCCAG
GAAGTGGCAAAAGCACAATCTTGAACTGCTTGATGACATCAAGAAGTCCA
GACCCTCTTCATGAAAGCCAGAGATTCAAGTCCGGTGTAGCTATTGCATC
AGGGATGACGTACCAACTGGACAAGAAAGAAGTTTGTGGATACTCCAGGT
CTGGATGACGTCAATAAACGAAAACAAGCTGCTGAAGCCATCACCAAGGC
TTTAAGAGAGAATGGAAAATATCAAGTCATTTTTGTGGTCACTTTGGAAG
CTGGTCGAGTGAAGCCGGCAGATGTGGCAACCATTCAATTGATCCTTGAA
AGCGCAAAAGAGATAACTCATTATGGTGTCATCTTCAACAAGCTGAGCAA
GCCAGTAATGAAAAAGCTGACGGCCAAAGATGGCAAGATGGCGTTGATCA
CTCAAGTGTCTGTTCAACCTGAAAAGGGAAAACCGAAGCCGCTAccattt
cctttgtttttgaagaaagatGGTGAACTTGAAGATGAGGATGATGCAGT
TGCTGAATTCCCTGAACTGGATACTTTCTTCGGTGGGTTGCCTTACATTG
ACATCAAGAAAGAGAACGTCCATGACATCCCAACTGAAAGTTTTGAAGCC
ATGAAAAGCAAGCTTGAAGATGAGCTTGACCATATGAAGAAAGATCGAGA
GTCCATGAAACGACAAATGGACGAAGATCGAAAAAACTTCAGACGAACAC
TTGAAGAAATGAATAGAAAAGAGCAAATGGAGAGAGAGAGATTCGAAAAG
GAGCGGGAAAGATCGGAAAAGAATCATGACAGTCAAATGGATATGATGAA
AACAcaaattaaagaaacaaaagaacaaGCAGCCAAGAGTGAGGTAGCAG
CACAGAAAAGCCACGAAGCTCAGGTGAAGAAAGATCAACTTGATCATGCG
TTGGCAATGAAGCAATTGGACCTGGCACATCAAAGAGAAATGAAACAAAT
CGATAACAACAAAAGAAGAGGATTCTTCAGCTTTCTATTTGGCTGATAAT
TCTTTCACATTCCTGTGGACTAACAAGAAAAACTATTTTACAGTTTATAT
TTACTTCACACGAATACCATTTTCTTACAATAAAATGTCAAAAGTATACT
CACCATTGATTTCTAAAGCCCTAAgggctacaatcatggtcgaaatagaa
tgagaattccggtta Run BLAST on NCBI protein sequence of TCONS_00005557-protein >TCONS_00005557-protein ID=TCONS_00005557-protein|Name=TCONS_00005557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MKKLTAKDGKMALITQVSVQPEKGKPKPLPFPLFLKKDGELEDEDDAVAE
FPELDTFFGGLPYIDIKKENVHDIPTESFEAMKSKLEDELDHMKKDRESM
KRQMDEDRKNFRRTLEEMNRKEQMERERFEKERERSEKNHDSQMDMMKTQ
IKETKEQAAKSEVAAQKSHEAQVKKDQLDHALAMKQLDLAHQREMKQIDN
NKRRGFFSFLFG Run BLAST on NCBI transcript from alignment at sc0000054:167779..169591+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005557 ID=TCONS_00005557|Name=TCONS_00005557|organism=Clytia hemisphaerica|type=transcript|length=1813bp|location=Sequence derived from alignment at sc0000054:167779..169591+ (Clytia hemisphaerica)
agaaaacaaaaaataaaagtgacaaagaaaaaagagatcGGATAAACGAT
AAAATGGAGAAGAATGGAAACAATCACAGCGAAACAAGAAGAAATCCATC
AGGTATATAAATCAATTGTTTATTCATTTTCCTTTATAAACTAGAAAATA
AGCCCTAAGACTAAGAATATGAATTCGTTCTTCGTACATCATACTCCCGA
GCTTATTAAATATTTGTAGcggccgtagcatgaaggtaagCTACGGTGGG
CAatgttgtgggttcaatcctcAACCGGTCATATCAAGACCTTAAAATGC
TACTTGGTGCCTCTCTTCTTGATACtcagaaattaaagaaaaggGTCAAG
GGTGAGAGGAGAAATCTAGGGAAAGGAGATGTGACAACAAGAGACAAGGG
AGCCTACGGGTCACCCTCCACTGCAAAACTTACTTACTAGTAGCTAACAG
CTGCAATTCAGTATAAATTCTGTTTTTATAATGAACACGTTTGAAAGAAC
AAAATTCAGTGCTTCGGACTATTTCCCCAAAACCTTCTTCAACACAAAGG
TAATAAATCTGGAGACATGCAAACACTCTTAAGCAATGCCTTTTCTTTAG
GGAATGGTGCCACAAACAGAGAATATGTCTTATTTGCTGGTAACCCAGGA
AGTGGCAAAAGCACAATCTTGAACTGCTTGATGACATCAAGAAGTCCAGA
CCCTCTTCATGAAAGCCAGAGATTCAAGTCCGGTGTAGCTATTGCATCAG
GGATGACGTACCAACTGGACAAGAAAGAAGTTTGTGGATACTCCAGGTCT
GGATGACGTCAATAAACGAAAACAAGCTGCTGAAGCCATCACCAAGGCTT
TAAGAGAGAATGGAAAATATCAAGTCATTTTTGTGGTCACTTTGGAAGCT
GGTCGAGTGAAGCCGGCAGATGTGGCAACCATTCAATTGATCCTTGAAAG
CGCAAAAGAGATAACTCATTATGGTGTCATCTTCAACAAGCTGAGCAAGC
CAGTAATGAAAAAGCTGACGGCCAAAGATGGCAAGATGGCGTTGATCACT
CAAGTGTCTGTTCAACCTGAAAAGGGAAAACCGAAGCCGCTAccatttcc
tttgtttttgaagaaagatGGTGAACTTGAAGATGAGGATGATGCAGTTG
CTGAATTCCCTGAACTGGATACTTTCTTCGGTGGGTTGCCTTACATTGAC
ATCAAGAAAGAGAACGTCCATGACATCCCAACTGAAAGTTTTGAAGCCAT
GAAAAGCAAGCTTGAAGATGAGCTTGACCATATGAAGAAAGATCGAGAGT
CCATGAAACGACAAATGGACGAAGATCGAAAAAACTTCAGACGAACACTT
GAAGAAATGAATAGAAAAGAGCAAATGGAGAGAGAGAGATTCGAAAAGGA
GCGGGAAAGATCGGAAAAGAATCATGACAGTCAAATGGATATGATGAAAA
CAcaaattaaagaaacaaaagaacaaGCAGCCAAGAGTGAGGTAGCAGCA
CAGAAAAGCCACGAAGCTCAGGTGAAGAAAGATCAACTTGATCATGCGTT
GGCAATGAAGCAATTGGACCTGGCACATCAAAGAGAAATGAAACAAATCG
ATAACAACAAAAGAAGAGGATTCTTCAGCTTTCTATTTGGCTGATAATTC
TTTCACATTCCTGTGGACTAACAAGAAAAACTATTTTACAGTTTATATTT
ACTTCACACGAATACCATTTTCTTACAATAAAATGTCAAAAGTATACTCA
CCATTGATTTCTAAAGCCCTAAgggctacaatcatggtcgaaatagaatg
agaattccggtta Coding sequence (CDS) from alignment at sc0000054:167779..169591+ >TCONS_00005557 ID=TCONS_00005557|Name=TCONS_00005557|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000054:167779..169591+ (Clytia hemisphaerica)
ATGAAAAAGCTGACGGCCAAAGATGGCAAGATGGCGTTGATCACTCAAGT
GTCTGTTCAACCTGAAAAGGGAAAACCGAAGCCGCTAccatttcctttgt
ttttgaagaaagatGGTGAACTTGAAGATGAGGATGATGCAGTTGCTGAA
TTCCCTGAACTGGATACTTTCTTCGGTGGGTTGCCTTACATTGACATCAA
GAAAGAGAACGTCCATGACATCCCAACTGAAAGTTTTGAAGCCATGAAAA
GCAAGCTTGAAGATGAGCTTGACCATATGAAGAAAGATCGAGAGTCCATG
AAACGACAAATGGACGAAGATCGAAAAAACTTCAGACGAACACTTGAAGA
AATGAATAGAAAAGAGCAAATGGAGAGAGAGAGATTCGAAAAGGAGCGGG
AAAGATCGGAAAAGAATCATGACAGTCAAATGGATATGATGAAAACAcaa
attaaagaaacaaaagaacaaGCAGCCAAGAGTGAGGTAGCAGCACAGAA
AAGCCACGAAGCTCAGGTGAAGAAAGATCAACTTGATCATGCGTTGGCAA
TGAAGCAATTGGACCTGGCACATCAAAGAGAAATGAAACAAATCGATAAC
AACAAAAGAAGAGGATTCTTCAGCTTTCTATTTGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005557-exon-sc0000054-1491911889:167779..167880 | TCONS_00005557-exon-sc0000054-1491911889:167779..167880 | Clytia hemisphaerica | exon |
| TCONS_00005557-exon-sc0000054-1510915933:167779..167880 | TCONS_00005557-exon-sc0000054-1510915933:167779..167880 | Clytia hemisphaerica | exon |
| TCONS_00005557-exon-sc0000054-1575043694:167779..167880 | TCONS_00005557-exon-sc0000054-1575043694:167779..167880 | Clytia hemisphaerica | exon |
| TCONS_00005557-exon-sc0000054-1491911889:168379..169591 | TCONS_00005557-exon-sc0000054-1491911889:168379..169591 | Clytia hemisphaerica | exon |
| TCONS_00005557-exon-sc0000054-1510915933:168379..169591 | TCONS_00005557-exon-sc0000054-1510915933:168379..169591 | Clytia hemisphaerica | exon |
| TCONS_00005557-exon-sc0000054-1575043694:168379..169591 | TCONS_00005557-exon-sc0000054-1575043694:168379..169591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:167779..169591 + |
Blast
The following BLAST results are available for this feature:
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