TCONS_00005555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005555
Unique NameTCONS_00005555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005555 ID=TCONS_00005555|Name=TCONS_00005555|organism=Clytia hemisphaerica|type=transcript|length=2198bp
GAAAATCTTTCTTCTTTGATATGGTTTGTTGGGATGGTGAAATGTTGCAT
GTGATTGAGTTGAGAGTTGTCCAGGAAATTGATGATGAACTTACTGAACA
AgtacaaaaagaagaaagtaacACAGATACAAACGAGAAGTCATCGAGTC
AACACACACCAACACGAAGTCGAAGTACCCGGGGCAATACTTTCTTAACA
GCCATGGGTTTACAAACTAGATCATCGTCACTGACTCAACACCATCACAA
AAACATGGAACATCTGATGGCAGTCAGAGCGAAATGTGTTGAAGAGCTGG
TCAATACAGAGAAAGATTATGTACAAATGCTACGCAATATCATAGAGGGA
TATTTAGAGAAAGTGCGTCAAGAGAAGAGCCTTTTCACTGCAGCTGATGC
AGAGACCATCTTCGGCAACATCGAAGAACTTTATCACTTCCATAAAGAAT
TCTTGAAAGAacttcaacaagccatcaaatTCGATCGAATGGAGGAATCC
ATTGTCGGGCATCTTTTCATAAAACACAAAAACAGATTCGAGATCTACTC
AAAATACTGCAACAATCAGCCTCGTTCCAGTGCTAGAATCTCACGGTTga
tcaaagaaaagaaatacgAATTATTTTTCGAAacGTGCCGTTTACGTCAA
AACATGATACGGCTTTCGTTGGACGGATTTCTTCTTTCACCCGTCCAAAG
AATTTGTAAATATCCACTACAATTAAAAGAATTATTGAAACATACACATT
CTGAACACGAAGATTATAATACGCTCAACGAAGCGAAAACATGCATGCAA
AACGTTGCTGCTGTCATAAACGAGCGAAAAAGACGCTTAGAAAATGTAAA
TAAACTTGCACGGTGGCAATTGACTGTCTCTAATTGGAAAGATGAAGACG
TGGTGATGAAAAGTAGTGATTTATTGTTTAAAGGACCTTTACTGAAGATT
AATAACGGTCGAGAATGCGAACGTTTTGTGTATTTATTTGACCATCAGTT
GTTATATTTCGTCAAAGAGGAAAACAGACGACAGCCATTATGTTACCGAG
GACGCGTTGACTTGGATACGGCGATAATAGAGAACTTGGGAGATAACCAT
GTTTTTATACGAGGTGATACTGTGTCAAATGTGTGGCGGATATGGAACAC
GAGTAAAACGAAATGGTGTTATTTCCGCGCGGACACAGCGGAGAAGAAAG
AGAATTGGTTGAAAGCgcttgaaaacgaaagagaACATGTTAAAGAAGAA
CAAAAGCAAGGTTTTACAGTACTACCAGAAGTTCGAAGTGCGGCCATGGA
AAGCGCTTACACAAAACATATAGCAGGTGTGAAACGTGGTCGGATGAGAC
GTAAATCCATTTGTACAAATCATCCGGAGCTGGAAACAACGTACGCTTCC
GGACCGTTAGCTGGCCCCATTAACCGGACTTTTTCTTCGACTCTCGCTAC
ATCCTCCTCCTCATCATCCACGAGGTCTTCCAATAACTCAAAATCATCCC
TTTCAACGTCACCTTCAAGTCCAACgaacaataataataacaataatatg
aCGTCATCGTACTCAATACAAAGCGAAGACGGGCCAACCGTTCGGAAAAG
GGTCCATAAACCGAAACGTAAAAACTCTTTTCGATGGTCATTAAATAGta
ctatatttgaaaaatacttttgattttttcatatacattttcttcatctt
ttatATGAAAATGACCTCTCTCGTGACCTTTTGTCTCATTTTTCTTTGAA
GTCGTTTTTatgtattcaatttcatttgtttcgttttttgtcattttttg
ataataatttttttgcgaatattttctttttacacCTTCGTCACTTTTGT
CTGCATCCACCTACGTATAACTGGGAAGATATTCTCGAATATTTTACAAG
GGACCGAGTTCAAACTTAGGTTTAGTTTTTACTCACGATTATCAAACTTT
GAGGTTTCTTTGAacttaaaatatatttcttacactcttttttatgaTTA
TTTTATAGTTTCCATGTTTTCTGTCCAATTTTTATGTGACcaattttgta
taaaattttACCTAAATTTAATGATTGCCCCTGTTTATACTATTTTATGC
CAAACTGAATATAgagataaatttattttttatatgaatAAAAGACAGAA
ATTCTTTAGTATAAAATGATTACAAAGTTTCCTTATCCATTTTCctag
Run BLAST on NCBI

transcript from alignment at sc0000054:152081..156821+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005555 ID=TCONS_00005555|Name=TCONS_00005555|organism=Clytia hemisphaerica|type=transcript|length=4741bp|location=Sequence derived from alignment at sc0000054:152081..156821+ (Clytia hemisphaerica)
GAAAATCTTTCTTCTTTGATATGGTTTGTTGGGATGGTGAAATGTTGCAT
GTGATTGAGGTACTACAGTTGAAGTCTTCTATTCGAGCCGTTTTCCTTTT
AGAAACAGAGAAAGGGATTTTATCTCAACCGTCTTTCCAAGTAAATGCTT
GACTATCATTATTTCGTTGTGTCATTCAGAATTTTGATTTGGTAGGAAAA
GTGTCAAACACGTATAACTAATTGTCATGTACCATTTGAAATGCCATAGA
TGAAAGTGTATAATTTTAGCATTGACGTGTTTTTTACTTAATgggaaaca
atttttgaaactcCATCCATCGGCAATACTATCTCCTTTTAtagaatgtt
ttaattttcaagcttAACAGAATTTCCCATGCGTCTACGAAGGATATCAG
TTTTTACGTCACAGCACTTTGATGGAAATTGTTTATAAAGATGCGTATTT
TATCCTTTCTCATTTCCAGTTGAGAGTTGTCCAGGAAATTGATGATGAAC
TTACTGAACAAgtacaaaaagaagaaagtaacACAGATACAAACGAGAAG
TCATCGAGTCAACACACACCAACACGAAGTCGAAGTACCCGGGGCAATAC
TTTCTTAACAGCCATGGGTTTACAAACTAGATCATCGTCACTGACTCAAC
ACCATCACAAAAACATGGAACATCTGATGGCAGTCAGAGCGAAATGTGTT
GAAGAGCTGGTCAATACAGAGAAAGATTATGTACAAATGCTACGCAATAT
CATAGAGGTACGTTTTGTAAATGACTTCTAGTTACCTAAAATTCAGACAC
TTGCTAATAATGTGGCTATGGCTATATATTAAAGTTATCTAATTTGCACG
ATTGAGTACATCTGACATCTCTATATCAATCGCTCTTTTTTACATTGCAG
GGATATTTAGAGAAAGTGCGTCAAGAGAAGAGCCTTTTCACTGCAGCTGA
TGCAGAGACCATCTTCGGCAACATCGAAGAACTTTATCACTTCCATAAAG
AATTCTTGAAAGAacttcaacaagccatcaaatTCGATCGAATGGAGGAA
TCCATTGTCGGGCATCTTTTCATAAAACACGTAAGTTGACTTTTGATTAA
TTAGTTCGTCCTCTCAATCTACTGAGCTCTGAACTGGGTgtatttcaatt
tctttcaacTTTAATGGTAAGCAGGGTgtcactttttcatttttttgacg
aAGTGGTACATTAAGGAAAACTCTAATCCACCCGTGACCCCGTTATTATT
TCTGGTGCTTGAGTTTAGTAGTCAAGTTCTGCTCCGTCAATCTTTTGACT
ACGAATTTGTTATGGGAGATTCTTGTGAGAAACATTATATAACAAGGAGA
CCTCCAAAACATATGTCCTTGGATTATAGCTTCTCAATTTCACAGATTAT
AAGTTTTCGCACGACTTTAGNTATGTCCTTGGAttatagcttctcaaatt
cacagATTATAAGTTTTCGCACGGCTTTAAATAGAACTGACCCAGTGATG
TGACTTTTATTTATTGTTTTGGTTATAGAAAAACAGATTCGAGATCTACT
CAAAATACTGCAACAATCAGCCTCGTTCCAGTGCTAGAATCTCACGGTTg
atcaaagaaaagaaatacgAATTATTTTTCGAAGTAAGTAATAGACCCTC
TAGGTGTTATTATCGGATTCTGTTTGAATATTTGGGGAATTTCTTGAATC
TCAAACATTTAGAAACCCGTCAATCTCAACTAATGTCCCTGAGGCGCCAT
AGGATTGATGAAGATTTGATAGGATCACTTCATTGAGActcctttcttgt
tttttctgcGGATTTATAAGATTTAAAACCTTCGATTCTCATGTGCTCGA
GTTATGTGCCTTAGGCAGATTCATCCATTAAAGAATTTATACCGCTATTT
TCTTGTTAATCGACCATTTAGCGGTGGAATtctgatcgaaaaaaaaatct
gacaaaACTCTTCACAAATATGGTTGATAAGATGATCGATAGATGGTCAC
ATTTTTCTCACTGTTCGACAAATTCTTTTTCATAATCCAAATATAAGACC
GTTGacttaaaattcttttttaccTTGCAACTATTTTAAGaagatttatc
tttttaaagctacttttaaAACCTGCGAAATTTTTATTCAGGTCAAACAG
CATTTTTGATATTGTTTCATCTGCAGTAGAGGATTTACACTTGGGTGTTT
ATGAGAAATTCGTGATCGACGCATAcgattaaaagtttttttcattcgTT
TTCGAGGCCTCTAACTGCTTATTTCCCGGATATTTTCTATTATTTCGAAC
CGTTTTAACACCTAACGGTCCCGGATGACGAATGCTCCcgtttgaaaaaa
ctcaaacgTCCTCATTTAAACCACTTATAAAGGTGTCTCAAAGTACCACA
AAACTTCCTTTAATGATGAAATAGCGCGTCATATTTATAAAtacttttta
tttcttttctttttatagacGTGCCGTTTACGTCAAAACATGATACGGCT
TTCGTTGGACGGATTTCTTCTTTCACCCGTCCAAAGAATTTGTAAATATC
CACTACAATTAAAAGTAAGTATCCGGATGCTTtgtctatctatatatttc
atactaAAAGGTCCTGGGAGCCATTATCCGTACATTATTACAAAACAATT
GATGTAAGGTATTCGCTTACGCTACTCAAGTCATTTGTAGAGATTGTTGT
CTCAAAATCCTTGTTTACCTTCTACCAATTTTACCCATGATTCATAGCGG
TCTAAAAAGATAGGGTTTTGAATATTAGAAGGTTGGTTGCTGACGAGTAT
TTTGTAAAAGGAAACTGTACCTGTATGCTGGATATCATTTTATTTACTTA
TTCCTTTTCCAGGAATTATTGAAACATACACATTCTGAACACGAAGATTA
TAATACGCTCAACGAAGCGAAAACATGCATGCAAAACGTTGCTGCTGTCA
TAAACGAGCGAAAAAGACGCTTAGAAAATGTAAATAAACTTGCACGGTGG
CAATTGACTGTCTCTAATTGGAAAGATGAAGACGTGGTGATGAAAAGTAG
TGATTTATTGTTTAAAGGACCTTTACTGAAGATTAATAACGGTCGAGAAT
GCGAACGTTTTGTGTATTTATTTGACCATCAGTTGTTATATTTCGTCAAA
GAGGAAAACAGACGACAGCCATTATGTTACCGAGGACGCGTTGACTTGGA
TACGGCGATAATAGAGAACTTGGGAGATAACCATGTTTTTATACGAGGTG
ATACTGTGTCAAATGTGTGGCGGATATGGAACACGAGTAAAACGAAATGG
TGTTATTTCCGCGCGGACACAGCGGAGAAGAAAGAGAATTGGTTGAAAGC
gcttgaaaacgaaagagaACATGTTAAAGAAGAACAAAAGCAAGGTAcct
atcaagtaccatttttaaattttttaaatacctTAATGCTTAATGTTCTT
GTCATTTGAAAGACTACACCTAATTTCATAGGGGGTAGTCTCAAGCCAGC
CCCTCATTTTCCCCTGTATATAATTCATAAGTGCAGTCAAGGCGACCATC
GAGCACTTCGtatattttgatcattttaagTAGAGCATGATTTGGAATAC
TCATTATTTATATTCTCATTTCCCGTTCAGGTTTTACAGTACTACCAGAA
GTTCGAAGTGCGGCCATGGAAAGCGCTTACACAAAACATATAGCAGGTAA
GATTCCCTTTTTAATGGATCAAGGCATCATCAACTTTATAAAGGTCCTAT
CTGAATGTGGATTCTCTTATTGAGGGCGTAAGGgtaaatcgttcaaataa
tctCGCACcctttttaaattaaataaatcaGAACATGAAAATTCAATTTA
TCTTTCCTCCATTTTTCAGGTGTGAAACGTGGTCGGATGAGACGTAAATC
CATTTGTACAAATCATCCGGAGCTGGAAACAACGTACGCTTCCGGACCGT
TAGCTGGCCCCATTAACCGGACTTTTTCTTCGACTCTCGCTACATCCTCC
TCCTCATCATCCACGAGGTCTTCCAATAACTCAAAATCATCCCTTTCAAC
GTCACCTTCAAGTCCAACgaacaataataataacaataatatgaCGTCAT
CGTACTCAATACAAAGCGAAGACGGGCCAACCGTTCGGAAAAGGGTCCAT
AAACCGAAACGTAAAAACTCTTTTCGATGGTCATTAAATAGtactatatt
tgaaaaatacttttgattttttcatatacattttcttcatcttttatATG
AAAATGACCTCTCTCGTGACCTTTTGTCTCATTTTTCTTTGAAGTCGTTT
TTatgtattcaatttcatttgtttcgttttttgtcattttttgataataa
tttttttgcgaatattttctttttacacCTTCGTCACTTTTGTCTGCATC
CACCTACGTATAACTGGGAAGATATTCTCGAATATTTTACAAGGGACCGA
GTTCAAACTTAGGTTTAGTTTTTACTCACGATTATCAAACTTTGAGGTTT
CTTTGAacttaaaatatatttcttacactcttttttatgaTTATTTTATA
GTTTCCATGTTTTCTGTCCAATTTTTATGTGACcaattttgtataaaatt
ttACCTAAATTTAATGATTGCCCCTGTTTATACTATTTTATGCCAAACTG
AATATAgagataaatttattttttatatgaatAAAAGACAGAAATTCTTT
AGTATAAAATGATTACAAAGTTTCCTTATCCATTTTCctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003165XLOC_003165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005555-exon-sc0000054-1491911889:152081..152139TCONS_00005555-exon-sc0000054-1491911889:152081..152139Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:152081..152139TCONS_00005555-exon-sc0000054-1510915933:152081..152139Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:152081..152139TCONS_00005555-exon-sc0000054-1575043694:152081..152139Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1491911889:152550..152837TCONS_00005555-exon-sc0000054-1491911889:152550..152837Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:152550..152837TCONS_00005555-exon-sc0000054-1510915933:152550..152837Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:152550..152837TCONS_00005555-exon-sc0000054-1575043694:152550..152837Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1491911889:152981..153160TCONS_00005555-exon-sc0000054-1491911889:152981..153160Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:152981..153160TCONS_00005555-exon-sc0000054-1510915933:152981..153160Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:152981..153160TCONS_00005555-exon-sc0000054-1575043694:152981..153160Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1491911889:153609..153713TCONS_00005555-exon-sc0000054-1491911889:153609..153713Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:153609..153713TCONS_00005555-exon-sc0000054-1510915933:153609..153713Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:153609..153713TCONS_00005555-exon-sc0000054-1575043694:153609..153713Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1491911889:154549..154644TCONS_00005555-exon-sc0000054-1491911889:154549..154644Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:154549..154644TCONS_00005555-exon-sc0000054-1510915933:154549..154644Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:154549..154644TCONS_00005555-exon-sc0000054-1575043694:154549..154644Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1491911889:154943..155474TCONS_00005555-exon-sc0000054-1491911889:154943..155474Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:154943..155474TCONS_00005555-exon-sc0000054-1510915933:154943..155474Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:154943..155474TCONS_00005555-exon-sc0000054-1575043694:154943..155474Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1491911889:155711..155776TCONS_00005555-exon-sc0000054-1491911889:155711..155776Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:155711..155776TCONS_00005555-exon-sc0000054-1510915933:155711..155776Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:155711..155776TCONS_00005555-exon-sc0000054-1575043694:155711..155776Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1491911889:155950..156821TCONS_00005555-exon-sc0000054-1491911889:155950..156821Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1510915933:155950..156821TCONS_00005555-exon-sc0000054-1510915933:155950..156821Clytia hemisphaericaexon
TCONS_00005555-exon-sc0000054-1575043694:155950..156821TCONS_00005555-exon-sc0000054-1575043694:155950..156821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:152081..156821 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.70887e-05	6.80423e-05	0	0.375346	3.42466	2.40499	4.93553	4.97057	2.50276	8.87636	10.4977	13.1769	9.36437	6.36817	5.46581	0.749917	4.09761	5.6879	5.9933	8.38304	2.36958	1.93244	3.06007e-08	8.72751e-08	4.5013	4.4506	25.6436	30.6523	4.64996	0.166564
Blast
[Close]
BLAST of TCONS_00005555 vs. Swiss-Prot (Human)
Match: ARHG4 (Rho guanine nucleotide exchange factor 4 OS=Homo sapiens GN=ARHGEF4 PE=1 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 1.553e-91
Identity = 153/392 (39.03%), Postives = 239/392 (60.97%), Query Frame = 3 
Query:  273 VRAKCVEELVNTEKDYVQMLRNIIEGYLEKVRQEKSLFTAADAETIFGNIEELYHFHKEFLKELQQAIKFDRMEESIVGHLFIKHKNRFEIYSKYCNNQPRSSARISRLIKEKKYELFFETCRLRQNMIRLSLDGFLLSPVQRICKYPLQLKELLKHTHSEHEDYNTLNEAKTCMQNVAAVINERKRRLENVNKLARWQLTVSNWKDEDVVMKSSDLLFKGPLLKIN--NGRECERFVYLFDHQLLYFVKEENRRQPLCYRGRVDLDTAIIENLGDNHVFIRGDTVSNVWRIWNTSKTKWCYFRADTAEKKENWLKALENEREHVKEEQKQGFTVLPEVRSAAMESAYTKHIAGVKRG--------RMRRKSICTNHPELETTYASGPLAGP 1418
            +R   + E+++TE+DY++ LR+I EGY+ + R+   +F+     TIFGNIE++Y   K F+K L+Q    +R   S +G  F++H+  F+IYS+YCNN P +   +SRL K  KY  FFE CRL Q MI +SLDGFLL+PVQ+ICKYPLQL ELLK+TH +H D+  +  A   M+NVA +INERKRRLEN++K+A+WQ ++ +W+ ED++++SS+L++ G L ++     +  +R  +LFDHQL+Y  K+  RR  L Y+GR+D+D   + +L D        ++ N +R+   +            E+K+ WLKA   ERE V+ +Q+ GF++    R  AM +A  + + G  +         R +  ++ +N P+ +    + P   P
Sbjct:  284 MRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAMLNASKQQVTGKPKAVGRPCYLTRQKHPALPSNRPQQQVLVLAEPRRKP 675
The following BLAST results are available for this feature:
BLAST of TCONS_00005555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARHG41.553e-9139.03Rho guanine nucleotide exchange factor 4 OS=Homo s... [more]
back to top