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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005551 ID=TCONS_00005551|Name=TCONS_00005551|organism=Clytia hemisphaerica|type=transcript|length=4752bpRun BLAST on NCBI protein sequence of TCONS_00005551-protein >TCONS_00005551-protein ID=TCONS_00005551-protein|Name=TCONS_00005551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1061bp MIMMNKKSKKVKKTKDCSTTSKSPTDSPSNSSFAPFTTIRKSFKRLKRKKRun BLAST on NCBI transcript from alignment at sc0000054:136419..157826+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005551 ID=TCONS_00005551|Name=TCONS_00005551|organism=Clytia hemisphaerica|type=transcript|length=21408bp|location=Sequence derived from alignment at sc0000054:136419..157826+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:136419..157826+ >TCONS_00005551 ID=TCONS_00005551|Name=TCONS_00005551|organism=Clytia hemisphaerica|type=CDS|length=28674bp|location=Sequence derived from alignment at sc0000054:136419..157826+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005551 vs. Swiss-Prot (Human)
Match: ARHG4 (Rho guanine nucleotide exchange factor 4 OS=Homo sapiens GN=ARHGEF4 PE=1 SV=3) HSP 1 Score: 358.607 bits (919), Expect = 5.506e-107 Identity = 193/519 (37.19%), Postives = 294/519 (56.65%), Query Frame = 1
Query: 1678 LAIAEALWDHTGLNEDDLAFSSGDVISVLYMEDEASWWWGVRKDGKEGWFPASYVRLRVVQEIDDELTEQVQKEESNTDTNEKSSSQHTPTRSRSTRGNTFLTAMGLQTRSSSLTQHHHKNMEHLMAVRAKCVEELVNTEKDYVQMLRNIIEGYLEKVRQEKSLFTAADAETIFGNIEELYHFHKEFLKELQQAIKFDRMEESIVGHLFIKHKNRFEIYSKYCNNQPRSSARISRLIKEKKYELFFETCRLRQNMIRLSLDGFLLSPVQRICKYPLQLKELLKHTHSEHEDYNTLNEAKTCMQNVAAVINERKRRLENVNKLARWQLTVSNWKDEDVVMKSSDLLFKGPLLKIN--NGRECERFVYLFDHQLLYFVKEENRRQPLCYRGRVDLDTAIIENLGDNHVFIRGDTVSNVWRIWNTSKTKWCYFRADTAEKKENWLKALENEREHVKEEQKQGFTVLPEVRSAAMESAYTKHIAGVKRG--------RMRRKSICTNHPELETTYASGPLAGP 3204
+ AEALWDH +++ +L F +GDVI V+ + WWWG DG EGWFPAS+VRLRV Q+ E ++ D GN+ G + +SS +R + E+++TE+DY++ LR+I EGY+ + R+ +F+ TIFGNIE++Y K F+K L+Q +R S +G F++H+ F+IYS+YCNN P + +SRL K KY FFE CRL Q MI +SLDGFLL+PVQ+ICKYPLQL ELLK+TH +H D+ + A M+NVA +INERKRRLEN++K+A+WQ ++ +W+ ED++++SS+L++ G L ++ + +R +LFDHQL+Y K+ RR L Y+GR+D+D + +L D ++ N +R+ + E+K+ WLKA ERE V+ +Q+ GF++ R AM +A + + G + R + ++ +N P+ + + P P
Sbjct: 196 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNR-EWWWGRVADG-EGWFPASFVRLRVNQD-----------EPADDDA--------------PLAGNSGAEDGGAEAQSSK------------DQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAMLNASKQQVTGKPKAVGRPCYLTRQKHPALPSNRPQQQVLVLAEPRRKP 675 The following BLAST results are available for this feature:
BLAST of TCONS_00005551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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