TCONS_00005542 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005542
Unique NameTCONS_00005542
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005542 ID=TCONS_00005542|Name=TCONS_00005542|organism=Clytia hemisphaerica|type=transcript|length=744bp
AGCAAAATAACTATCAAACAGAGAAATGTAAAGTTTAGccgaatgatttt
tttaaaagaaacgtCGAGGAAGTCGTTGTGAACTCGACATTTCTGACAGG
GAGAGTTGAAGAGCAAGCAAGCACTTTACGCGTAAACAATGTAGTAAGAT
TTCAACAGCTTCAGATACTCTCTTATCCTTATGTAAAAATTAGTCAAATT
CCACATTATGGGTTTTTTGAAGTAAGGGGAATTtaatattttggaatttt
ataAACTGGggctttttcataaaaattgaccaaaaaaagctttaaaattt
aAAGCATAAACCAAAGCAAAGGTTGAATTTTAAGTTTAACTCACTGAATA
TATgaagaaagaattaaaaaatgttgacAAATCTTATGTTTATATAACTT
AGTGCGCATTTGACTTGCATTAACAACTCCCAGTCATAAATGGCGGAGTT
CCCTCCCTCAATatcattttctgaaaagaaCCTATTTGAAGGGAGAAAGG
TAGTCATAATCTTCTACTCTAGTAACTAAAAAAGCAAGAATTCCTATGCT
ATCATAAACGTTTCACAAAATTACATTGAAATTTGCTTCTTAACAACCGT
TTTTCTATTTGCACAATTTTTGAAGTACAATCAGATTCCGTATTACacga
tttttttataaggacgtctaaaatttttgaagcctttagatgctatctta
actttttgagttttgagcctaaaaCTATTCtcagcatgttctta
Run BLAST on NCBI

transcript from alignment at sc0000053:836197..836940

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005542 ID=TCONS_00005542|Name=TCONS_00005542|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at sc0000053:836197..836940 (Clytia hemisphaerica)
taagaacatgctgaGAATAGttttaggctcaaaactcaaaaagttaagat
agcatctaaaggcttcaaaaattttagacgtccttataaaaaaatcgtGT
AATACGGAATCTGATTGTACTTCAAAAATTGTGCAAATAGAAAAACGGTT
GTTAAGAAGCAAATTTCAATGTAATTTTGTGAAACGTTTATGATAGCATA
GGAATTCTTGCTTTTTTAGTTACTAGAGTAGAAGATTATGACTACCTTTC
TCCCTTCAAATAGGttcttttcagaaaatgatATTGAGGGAGGGAACTCC
GCCATTTATGACTGGGAGTTGTTAATGCAAGTCAAATGCGCACTAAGTTA
TATAAACATAAGATTTgtcaacattttttaattctttcttcATATATTCA
GTGAGTTAAACTTAAAATTCAACCTTTGCTTTGGTTTATGCTTtaaattt
taaagctttttttggtcaatttttatgaaaaagccCCAGTTtataaaatt
ccaaaatattaAATTCCCCTTACTTCAAAAAACCCATAATGTGGAATTTG
ACTAATTTTTACATAAGGATAAGAGAGTATCTGAAGCTGTTGAAATCTTA
CTACATTGTTTACGCGTAAAGTGCTTGCTTGCTCTTCAACTCTCCCTGTC
AGAAATGTCGAGTTCACAACGACTTCCTCGacgtttcttttaaaaaaatc
attcggCTAAACTTTACATTTCTCTGTTTGATAGTTATTTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003160XLOC_003160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005542-exon-sc0000053-1491911889:836197..836940TCONS_00005542-exon-sc0000053-1491911889:836197..836940Clytia hemisphaericaexon
TCONS_00005542-exon-sc0000053-1510915933:836197..836940TCONS_00005542-exon-sc0000053-1510915933:836197..836940Clytia hemisphaericaexon
TCONS_00005542-exon-sc0000053-1575043694:836197..836940TCONS_00005542-exon-sc0000053-1575043694:836197..836940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:836197..836940 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0663135	0.129332	0.225251	0.220373	1.87798	1.55467	2.64295	2.4743	1.28527	1.45357	1.00777	0.750796	1.05847	1.00763	0.188275	0.525325	0.796501	0.816388	0.986899	0.516359	1.60289	1.12584	1.21654	0.691258	1.70875	2.73232	0.636503	0.970419	0.883234	0.599917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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