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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005539 ID=TCONS_00005539|Name=TCONS_00005539|organism=Clytia hemisphaerica|type=transcript|length=1070bp
gagttattcaaaaaacaagttttgctgacgtcagtatttttaggtttttg
cCTAATAACTTTTTTGGGCagttttgggtgaaaaaatttattttattaac
aGTGATTTCTGAATTCTAAATCCAAATatgcttctttaaaggtataaata
GTAGGCCTGGTTCGTGACAAAAAAGATCAAAAACATGCAAAATTGAAACA
AAGCACCAAATTTGGACCAGATATGCCTAATACCCTATGGATTGATATTA
GAAGGGCGGCCCAGAAAGATTTTAAGGGTCCCTCTTATTTTTGGACCCAT
TTATTGAAAACCTAGGCTAGGCCAATTTTTTATGGAAGTTTTAAActaat
cttcttcttctttatgcgaccgcagtcgagtaCGCCTTCACAACATCCTT
TCACCTCTTCCTATAATTCATCATTGATGGCAGATCTTCTAGCCGGACAT
TTGTTTCTCTGACAATgcaattaatgaaatttaaaggaCACCTTCCTCTG
TTTGGACATTTCAACCTCAGAAAAAGTACGTCGGAAACGATTTCTTCTTT
TGCTCTGTGGCAATGACCTGTAGCCTTGCTTTTCCTTGATTGACGACGAT
TGAGATGGGCGGTAGATTTTCATAGATTTCAGCTTTGGTTTTATGCTGGC
GCCATGAGATATTTTTCACTCTCATGAGAAGGCCGGTGTAGCAACCATCA
AGACAATCCTGTAGTTCATTCTTCATGGTCCAAGTTTCCGAACCGTAAAG
TAGGATGCTTTCTACACAGGCTTTGAAAAaggatatttttgttttgttag
aaaTTGTTGATTGCCACACATTATGCAGACGGTTACATGCAGACCATGCT
TGTGCTTTTCGAGTGTTGAAGTCTTTTCTGCAGTCTACGACGTAGGAGCT
TAGGTATTTGAAGTCTGAGACTTCGTTTAGTGTATTTAAACTCATGTTTT
AAactcattttaggccaaaaccaTTTATAGAATCTGAAActctcaaaaaa
ctataaaGAAGATTTCTAAGCAAGTATGGTTGATTTCTGTACTGAAAAGG
AGTTATTTGATAAAGAGGTG Run BLAST on NCBI protein sequence of TCONS_00005539-protein >TCONS_00005539-protein ID=TCONS_00005539-protein|Name=TCONS_00005539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MSLNTLNEVSDFKYLSSYVVDCRKDFNTRKAQAWSACNRLHNVWQSTISN
KTKISFFKACVESILLYGSETWTMKNELQDCLDGCYTGLLMRVKNISWRQ
HKTKAEIYENLPPISIVVNQGKARLQVIATEQKKKSFPTYFF Run BLAST on NCBI transcript from alignment at sc0000053:720234..721303 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005539 ID=TCONS_00005539|Name=TCONS_00005539|organism=Clytia hemisphaerica|type=transcript|length=1070bp|location=Sequence derived from alignment at sc0000053:720234..721303 (Clytia hemisphaerica)
CACCTCTTTATCAAATAACTCCTTTTCAGTACAGAAATCAACCATACTTG
CTTAGAAATCTTCtttatagttttttgagagTTTCAGATTCTATAAAtgg
ttttggcctaaaatgagtTTAAAACATGAGTTTAAATACACTAAACGAAG
TCTCAGACTTCAAATACCTAAGCTCCTACGTCGTAGACTGCAGAAAAGAC
TTCAACACTCGAAAAGCACAAGCATGGTCTGCATGTAACCGTCTGCATAA
TGTGTGGCAATCAACAAtttctaacaaaacaaaaatatcctTTTTCAAAG
CCTGTGTAGAAAGCATCCTACTTTACGGTTCGGAAACTTGGACCATGAAG
AATGAACTACAGGATTGTCTTGATGGTTGCTACACCGGCCTTCTCATGAG
AGTGAAAAATATCTCATGGCGCCAGCATAAAACCAAAGCTGAAATCTATG
AAAATCTACCGCCCATCTCAATCGTCGTCAATCAAGGAAAAGCAAGGCTA
CAGGTCATTGCCACAGAGCAAAAGAAGAAATCGTTTCCGACGTACTTTTT
CTGAGGTTGAAATGTCCAAACAGAGGAAGGTGtcctttaaatttcattaa
ttgcATTGTCAGAGAAACAAATGTCCGGCTAGAAGATCTGCCATCAATGA
TGAATTATAGGAAGAGGTGAAAGGATGTTGTGAAGGCGtactcgactgcg
gtcgcataaagaagaagaagattagTTTAAAACTTCCATAAAAAATTGGC
CTAGCCTAGGTTTTCAATAAATGGGTCCAAAAATAAGAGGGACCCTTAAA
ATCTTTCTGGGCCGCCCTTCTAATATCAATCCATAGGGTATTAGGCATAT
CTGGTCCAAATTTGGTGCTTTGTTTCAATTTTGCATGTTTTTGATCTTTT
TTGTCACGAACCAGGCCTACtatttatacctttaaagaagcatATTTGGA
TTTAGAATTCAGAAATCACtgttaataaaataaattttttcacccaaaac
tGCCCAAAAAAGTTATTAGgcaaaaacctaaaaatactgacgtcagcaaa
acttgttttttgaataactc Coding sequence (CDS) from alignment at sc0000053:720234..721303 >TCONS_00005539 ID=TCONS_00005539|Name=TCONS_00005539|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000053:720234..721303 (Clytia hemisphaerica)
ATGAGTTTAAATACACTAAACGAAGTCTCAGACTTCAAATACCTAAGCTC
CTACGTCGTAGACTGCAGAAAAGACTTCAACACTCGAAAAGCACAAGCAT
GGTCTGCATGTAACCGTCTGCATAATGTGTGGCAATCAACAAtttctaac
aaaacaaaaatatcctTTTTCAAAGCCTGTGTAGAAAGCATCCTACTTTA
CGGTTCGGAAACTTGGACCATGAAGAATGAACTACAGGATTGTCTTGATG
GTTGCTACACCGGCCTTCTCATGAGAGTGAAAAATATCTCATGGCGCCAG
CATAAAACCAAAGCTGAAATCTATGAAAATCTACCGCCCATCTCAATCGT
CGTCAATCAAGGAAAAGCAAGGCTACAGGTCATTGCCACAGAGCAAAAGA
AGAAATCGTTTCCGACGTACTTTTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005539-exon-sc0000053-1491911889:720234..721303 | TCONS_00005539-exon-sc0000053-1491911889:720234..721303 | Clytia hemisphaerica | exon |
| TCONS_00005539-exon-sc0000053-1510915933:720234..721303 | TCONS_00005539-exon-sc0000053-1510915933:720234..721303 | Clytia hemisphaerica | exon |
| TCONS_00005539-exon-sc0000053-1575043694:720234..721303 | TCONS_00005539-exon-sc0000053-1575043694:720234..721303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:720234..721303 . |
Blast
The following BLAST results are available for this feature:
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