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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005536 ID=TCONS_00005536|Name=TCONS_00005536|organism=Clytia hemisphaerica|type=transcript|length=2415bp
GTTCAACTGTGTGTTAGTTTATACTTAACTGAAAAGGATTTGTCTGAGAG
CTGGATTTGGCTAGCTTTACATTCTTGTTAGATTTAGTcatttatttgac
ttttttactGTCACGagaaaatctgatttttcaCTGTTGACCTAACGTGG
ATTTTTGAAGTACTGGTGGAATAGCTTTCCTGGGAAATTGGCATGACTgt
tattgtttgaagttgttcTTCAATACGAACTGAAATTCTGGTCTCACTGG
CTAAACCATCTTTGAAAGAACCTGAAGTACCATTATTCTGCGCTCAATCA
AATAAGAATTCTTACAAAGATGTCTCATTTGCTATTGGGAATATTATTGA
CTTTGTTTTTCGTGCCCTTCGTTGAGTCATGTCCACAAGGATGTCATTGC
TCCGCTATGTCAGCTAAATGTGCAAATCTACCTACACATGTGGCAATGGA
AAGAACTTTATCAGAGATGCCAGAAAATATCACAAGGCTGGATCTCTCTA
AAAACGGCTTAACCAGCTTCAAGGCtagacttttatcaaatttgacCAGA
CTAAAAGTACTTTATCTAAACGAGAACAAATTGACACAATTACCACAAAA
TTTATCAGTGCACGTACCAACATTACGTAAACTTTACATGAGTGATAATT
ACCTGTTGAAAAGTTTATCCCGCCAGTCACTTGAAACGGCtttcaatttg
gaaaaaatttatttgcgTGATAGTGGTATCTTACGATTGAAAGCTGACGA
TTTTTACAATAATACGGCTTTATTACATTTGAACATACAGCATAACCGAA
TACGTAGAATTGACGTTAACGCTTTTACGGGGTTACGGCGTTTGCGGTTT
TTACACCTGGATAATAATATTATACGAGAATTACCGAAACACGTATTCAA
CCAGTTAATCAATTTGAATAAAATGAGCGTTTCTTCGAATAGTATATCGA
GTATACCAAATCACCTGTTTGCTCAAAACCGACAGTTAAAAATCATCGCT
TTAAACACGAATCTAATCAACCATCTTGGGTCAGCCTCGTTTCAAGACAT
TGGCAATTTGACTAATATCTACTTACAAAACAATCTGATCCGGAATTTCT
CCTCGGACACTTTTCAAGGTACTCATATTTCGGATAGTATCAATTTGAAT
GAAAACCCATTACATTGCGATTGTTATTTAACATCCTTGAAACTGAAATG
GTTACGTGTAGATGGCAAAATTAAAGGTCATTGCTCTAATCCACCCGAAC
TGACAGGCCGCCCAATAGCATGGATCACTCGTAAAGAACTTAATTGCACT
GAATGTGATTTTAACGGATGTCAAAATAACGCAACTTGCGTTATCGAAGC
GGACCAATACAACTGTGTCTGCACTGCAGGCTTTGAGGGCGGACTCTGTG
AAACGCCCATATCCGTCAGATTGAAAAAAGAGTCGGATTTAGGATGGATT
GTGACGACAGTCGTCTGTATTTTCGTCGTTGTTCTTGGCGTCATTTTTGC
AGTTTGGTATTACCGTAAACGTAAAGGGAGAGAATTATGCACGCAAAAAC
AGTGTTGCTGTTGCTTTTTTGCTGTGGGCGGTATTGGCGTTATTGGCGTT
TTTGTTATTGTTCAATTTGTTTCGTTAATGTATGAAGAGGACTCGCACGT
GTGAAAGTGGAGGAAAAACCACGGATGGTCCGCGCATTGGTTACGAGTTT
GAGTCATATCGAGTTCCAATCTGATTACTGACCCTTACGAATGGGATATT
CGTGCCTCATAAAGTTATTTCGTAAAATATGGTTGTAGTTACTCTTACTA
GGGGAccaaccacagatatctgtaaagcccgaagggctagatttgcggct
tttatcaaaaagtgaagctcatctttggaaggatttctgTCAGGCAGCTA
TATGAAATACGGCCCACCTTCGGCATTATGCTGAAGGTTATTCTTTGTAT
CTAGCCGCAACTATTTAAttagaaaaaagagaattttttaatATGGAACT
AGACATTATGAACTTAGGACATTGTagtaaaaatctataaaaagcaCATT
CTATTGCTCTCTATTTAATTCTGAACCCCCAGGACAGTTTTGTTAGCTTC
GGCTAAcaatttcctaccagagtcacgtgactaaaatatgcaatttcacc
ggtttgagagatgtgaaatagcgtttgccgcctacgtattttgatctcgc
gctccgaaaacaattaaaatgctagatcctatccatcggcacgaaattta
aaaagtcaaatttttgcttcacttttttttgctggagaaagcttaaagtt
gcaaatctagcccttcgggcttagatatctatGGGACCAACCCTCTGTGA
GATGTAACCATGTTTAATCAGAACTGCGGGTCCGCTCCAGCCATCACAAA
ATACAGAAACTTGCA Run BLAST on NCBI protein sequence of TCONS_00005536-protein >TCONS_00005536-protein ID=TCONS_00005536-protein|Name=TCONS_00005536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp
MSHLLLGILLTLFFVPFVESCPQGCHCSAMSAKCANLPTHVAMERTLSEM
PENITRLDLSKNGLTSFKARLLSNLTRLKVLYLNENKLTQLPQNLSVHVP
TLRKLYMSDNYLLKSLSRQSLETAFNLEKIYLRDSGILRLKADDFYNNTA
LLHLNIQHNRIRRIDVNAFTGLRRLRFLHLDNNIIRELPKHVFNQLINLN
KMSVSSNSISSIPNHLFAQNRQLKIIALNTNLINHLGSASFQDIGNLTNI
YLQNNLIRNFSSDTFQGTHISDSINLNENPLHCDCYLTSLKLKWLRVDGK
IKGHCSNPPELTGRPIAWITRKELNCTECDFNGCQNNATCVIEADQYNCV
CTAGFEGGLCETPISVRLKKESDLGWIVTTVVCIFVVVLGVIFAVWYYRK
RKGRELCTQKQCCCCFFAVGGIGVIGVFVIVQFVSLMYEEDSHV Run BLAST on NCBI transcript from alignment at sc0000053:614749..617163 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005536 ID=TCONS_00005536|Name=TCONS_00005536|organism=Clytia hemisphaerica|type=transcript|length=2415bp|location=Sequence derived from alignment at sc0000053:614749..617163 (Clytia hemisphaerica)
TGCAAGTTTCTGTATTTTGTGATGGCTGGAGCGGACCCGCAGTTCTGATT
AAACATGGTTACATCTCACAGAGGGTTGGTCCCatagatatctaagcccg
aagggctagatttgcaactttaagctttctccagcaaaaaaaagtgaagc
aaaaatttgactttttaaatttcgtgccgatggataggatctagcatttt
aattgttttcggagcgcgagatcaaaatacgtaggcggcaaacgctattt
cacatctctcaaaccggtgaaattgcatattttagtcacgtgactctggt
aggaaattgTTAGCCGAAGCTAACAAAACTGTCCTGGGGGTTCAGAATTA
AATAGAGAGCAATAGAATGtgctttttatagatttttactACAATGTCCT
AAGTTCATAATGTCTAGTTCCATattaaaaaattctcttttttctaaTTA
AATAGTTGCGGCTAGATACAAAGAATAACCTTCAGCATAATGCCGAAGGT
GGGCCGTATTTCATATAGCTGCCTGAcagaaatccttccaaagatgagct
tcactttttgataaaagccgcaaatctagcccttcgggctttacagatat
ctgtggttggTCCCCTAGTAAGAGTAACTACAACCATATTTTACGAAATA
ACTTTATGAGGCACGAATATCCCATTCGTAAGGGTCAGTAATCAGATTGG
AACTCGATATGACTCAAACTCGTAACCAATGCGCGGACCATCCGTGGTTT
TTCCTCCACTTTCACACGTGCGAGTCCTCTTCATACATTAACGAAACAAA
TTGAACAATAACAAAAACGCCAATAACGCCAATACCGCCCACAGCAAAAA
AGCAACAGCAACACTGTTTTTGCGTGCATAATTCTCTCCCTTTACGTTTA
CGGTAATACCAAACTGCAAAAATGACGCCAAGAACAACGACGAAAATACA
GACGACTGTCGTCACAATCCATCCTAAATCCGACTCTTTTTTCAATCTGA
CGGATATGGGCGTTTCACAGAGTCCGCCCTCAAAGCCTGCAGTGCAGACA
CAGTTGTATTGGTCCGCTTCGATAACGCAAGTTGCGTTATTTTGACATCC
GTTAAAATCACATTCAGTGCAATTAAGTTCTTTACGAGTGATCCATGCTA
TTGGGCGGCCTGTCAGTTCGGGTGGATTAGAGCAATGACCTTTAATTTTG
CCATCTACACGTAACCATTTCAGTTTCAAGGATGTTAAATAACAATCGCA
ATGTAATGGGTTTTCATTCAAATTGATACTATCCGAAATATGAGTACCTT
GAAAAGTGTCCGAGGAGAAATTCCGGATCAGATTGTTTTGTAAGTAGATA
TTAGTCAAATTGCCAATGTCTTGAAACGAGGCTGACCCAAGATGGTTGAT
TAGATTCGTGTTTAAAGCGATGATTTTTAACTGTCGGTTTTGAGCAAACA
GGTGATTTGGTATACTCGATATACTATTCGAAGAAACGCTCATTTTATTC
AAATTGATTAACTGGTTGAATACGTGTTTCGGTAATTCTCGTATAATATT
ATTATCCAGGTGTAAAAACCGCAAACGCCGTAACCCCGTAAAAGCGTTAA
CGTCAATTCTACGTATTCGGTTATGCTGTATGTTCAAATGTAATAAAGCC
GTATTATTGTAAAAATCGTCAGCTTTCAATCGTAAGATACCACTATCAcg
caaataaattttttccaaattgaaaGCCGTTTCAAGTGACTGGCGGGATA
AACTTTTCAACAGGTAATTATCACTCATGTAAAGTTTACGTAATGTTGGT
ACGTGCACTGATAAATTTTGTGGTAATTGTGTCAATTTGTTCTCGTTTAG
ATAAAGTACTTTTAGTCTGgtcaaatttgataaaagtctaGCCTTGAAGC
TGGTTAAGCCGTTTTTAGAGAGATCCAGCCTTGTGATATTTTCTGGCATC
TCTGATAAAGTTCTTTCCATTGCCACATGTGTAGGTAGATTTGCACATTT
AGCTGACATAGCGGAGCAATGACATCCTTGTGGACATGACTCAACGAAGG
GCACGAAAAACAAAGTCAATAATATTCCCAATAGCAAATGAGACATCTTT
GTAAGAATTCTTATTTGATTGAGCGCAGAATAATGGTACTTCAGGTTCTT
TCAAAGATGGTTTAGCCAGTGAGACCAGAATTTCAGTTCGTATTGAAgaa
caacttcaaacaataacAGTCATGCCAATTTCCCAGGAAAGCTATTCCAC
CAGTACTTCAAAAATCCACGTTAGGTCAACAGtgaaaaatcagattttct
CGTGACagtaaaaaagtcaaataaatgACTAAATCTAACAAGAATGTAAA
GCTAGCCAAATCCAGCTCTCAGACAAATCCTTTTCAGTTAAGTATAAACT
AACACACAGTTGAAC Coding sequence (CDS) from alignment at sc0000053:614749..617163 >TCONS_00005536 ID=TCONS_00005536|Name=TCONS_00005536|organism=Clytia hemisphaerica|type=CDS|length=1335bp|location=Sequence derived from alignment at sc0000053:614749..617163 (Clytia hemisphaerica)
TCACACGTGCGAGTCCTCTTCATACATTAACGAAACAAATTGAACAATAA
CAAAAACGCCAATAACGCCAATACCGCCCACAGCAAAAAAGCAACAGCAA
CACTGTTTTTGCGTGCATAATTCTCTCCCTTTACGTTTACGGTAATACCA
AACTGCAAAAATGACGCCAAGAACAACGACGAAAATACAGACGACTGTCG
TCACAATCCATCCTAAATCCGACTCTTTTTTCAATCTGACGGATATGGGC
GTTTCACAGAGTCCGCCCTCAAAGCCTGCAGTGCAGACACAGTTGTATTG
GTCCGCTTCGATAACGCAAGTTGCGTTATTTTGACATCCGTTAAAATCAC
ATTCAGTGCAATTAAGTTCTTTACGAGTGATCCATGCTATTGGGCGGCCT
GTCAGTTCGGGTGGATTAGAGCAATGACCTTTAATTTTGCCATCTACACG
TAACCATTTCAGTTTCAAGGATGTTAAATAACAATCGCAATGTAATGGGT
TTTCATTCAAATTGATACTATCCGAAATATGAGTACCTTGAAAAGTGTCC
GAGGAGAAATTCCGGATCAGATTGTTTTGTAAGTAGATATTAGTCAAATT
GCCAATGTCTTGAAACGAGGCTGACCCAAGATGGTTGATTAGATTCGTGT
TTAAAGCGATGATTTTTAACTGTCGGTTTTGAGCAAACAGGTGATTTGGT
ATACTCGATATACTATTCGAAGAAACGCTCATTTTATTCAAATTGATTAA
CTGGTTGAATACGTGTTTCGGTAATTCTCGTATAATATTATTATCCAGGT
GTAAAAACCGCAAACGCCGTAACCCCGTAAAAGCGTTAACGTCAATTCTA
CGTATTCGGTTATGCTGTATGTTCAAATGTAATAAAGCCGTATTATTGTA
AAAATCGTCAGCTTTCAATCGTAAGATACCACTATCAcgcaaataaattt
tttccaaattgaaaGCCGTTTCAAGTGACTGGCGGGATAAACTTTTCAAC
AGGTAATTATCACTCATGTAAAGTTTACGTAATGTTGGTACGTGCACTGA
TAAATTTTGTGGTAATTGTGTCAATTTGTTCTCGTTTAGATAAAGTACTT
TTAGTCTGgtcaaatttgataaaagtctaGCCTTGAAGCTGGTTAAGCCG
TTTTTAGAGAGATCCAGCCTTGTGATATTTTCTGGCATCTCTGATAAAGT
TCTTTCCATTGCCACATGTGTAGGTAGATTTGCACATTTAGCTGACATAG
CGGAGCAATGACATCCTTGTGGACATGACTCAACGAAGGGCACGAAAAAC
AAAGTCAATAATATTCCCAATAGCAAATGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005536-exon-sc0000053-1491911889:614749..617163 | TCONS_00005536-exon-sc0000053-1491911889:614749..617163 | Clytia hemisphaerica | exon |
| TCONS_00005536-exon-sc0000053-1510915933:614749..617163 | TCONS_00005536-exon-sc0000053-1510915933:614749..617163 | Clytia hemisphaerica | exon |
| TCONS_00005536-exon-sc0000053-1575043694:614749..617163 | TCONS_00005536-exon-sc0000053-1575043694:614749..617163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000053 | supercontig | sc0000053:614749..617163 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00005536 vs. Swiss-Prot (Human)
Match: CHADL (Chondroadherin-like protein OS=Homo sapiens GN=CHADL PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.825e-21 Identity = 78/284 (27.46%), Postives = 133/284 (46.83%), Query Frame = 2
Query: 476 NITRLDLSKNGLTSFKARLLSNLTRLKVLYLNENKLTQLPQNLSVHVPTLRKLYMSDNYLLKSLSRQSLETAFNLEKIYLRDSGILRLKADDFYNNTALLHLNIQHNRIRRIDVNAFTGLRRLRFLHLDNNIIRELPKHVFNQLINLNKMXXXXXXXXXXPNHLFAQ-NRQLKIIALNTNLINHLGSASFQDIG-NLTNIYLQNNLIRNFSSDTFQGTHISDSINLNENPLHCDCYLTSLKLKWLR-VDGKIKGHCSNPPELTGRPI-----------AWITRK 1285
++ L L G+ +A L+ L RL LYL++N+L L P L LY+ N L+ + +L +L ++L+D+ + RL D AL + + NRI + + A R L LHLD N +RE+P L L ++ +S N + ++ + F R L+ + LN++ + + +F +G L +++LQ N +R + + I+L+ NP HCDC L L +WL ++ ++ C+ PP G+ + W RK
Sbjct: 450 HLVSLHLQHCGIAELEAGALAGLGRLIYLYLSDNQLAGLSAAALEGAPRLGYLYLERNRFLQ-VPGAALRALPSLFSLHLQDNAVDRLAPGDLGRTRALRWVYLSGNRITEVSLGALGPARELEKLHLDRNQLREVPTGALEGLPALLELQLSGNPLRALRDGAFQPVGRSLQHLFLNSSGLEQICPGAFSGLGPGLQSLHLQKNQLRALPA--LPSLSQLELIDLSSNPFHCDCQLLPLH-RWLTGLNLRVGATCATPPNARGQRVKAAAAVFEDCPGWAARK 729
The following BLAST results are available for this feature:
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