TCONS_00005525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005525
Unique NameTCONS_00005525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005525 ID=TCONS_00005525|Name=TCONS_00005525|organism=Clytia hemisphaerica|type=transcript|length=209bp
CCTTACCTATAGTTTGGAGCGCCAACACTTTCCACGTACCACGATAAATA
TGTTTGTGGAACATTAACAAACTGAACACTTCTTGAGTAACCATACCAAC
TATATTCTTGATTGCTTTGTCCAACTGTTTGAAAAGTTAATGGATCAACT
GCGATACCAGATTGATTACTGAAGAATGGCGAATTGATTGTGATGTATCT
GTCGCCTAA
Run BLAST on NCBI

transcript from alignment at sc0000053:450242..450450

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005525 ID=TCONS_00005525|Name=TCONS_00005525|organism=Clytia hemisphaerica|type=transcript|length=209bp|location=Sequence derived from alignment at sc0000053:450242..450450 (Clytia hemisphaerica)
TTAGGCGACAGATACATCACAATCAATTCGCCATTCTTCAGTAATCAATC
TGGTATCGCAGTTGATCCATTAACTTTTCAAACAGTTGGACAAAGCAATC
AAGAATATAGTTGGTATGGTTACTCAAGAAGTGTTCAGTTTGTTAATGTT
CCACAAACATATTTATCGTGGTACGTGGAAAGTGTTGGCGCTCCAAACTA
TAGGTAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003143XLOC_003143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005525-exon-sc0000053-1491911889:450242..450450TCONS_00005525-exon-sc0000053-1491911889:450242..450450Clytia hemisphaericaexon
TCONS_00005525-exon-sc0000053-1510915933:450242..450450TCONS_00005525-exon-sc0000053-1510915933:450242..450450Clytia hemisphaericaexon
TCONS_00005525-exon-sc0000053-1575043694:450242..450450TCONS_00005525-exon-sc0000053-1575043694:450242..450450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000053supercontigsc0000053:450242..450450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.92517	1.42625	1.65601	0	0	1.5586	1.88038	10.5623	29.5798	18.3197	38.5266	4.87036	41.8269	32.3257	100.491	105.168	18.6653	40.5133	104.169	120.394	14.1411	6.20778	8.38485	3.04922	7.85156	5.60586	0	0	19.4803	24.8091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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